Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006142

Physical Location & Seq

Genomic Coordinates Reverse (-)

68581404 .. 68586251

Gene Structure 4848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG475000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

ATGATGCGCCAGCGTTTGAAGAAGCAAGCCAAGAAGACTAGTCTACTTTTCCTGGCTCGATCTTTGAGTTCCTCCTCATTTGGCTTTGCTCCCCAAAACTACTACTCCATCCCACCATCCAAGACTCACCTCTATTCATCCTTCTTTTGCACCCTTATACACCTCTACTTGGCCTGCGGCAGATTCTCCAATGCTTCCCACGCCTTCTTCTCTATGCGAAGTCATGGCCTCGTTCCTGTTCTGCCTCTTTGGAATCGGCTTCTTCACCATTTCAGTGCCTCTGGTTTGTCTTCTCAGGTATCCCTTCTCTACTCTGAGATGCTCTCCTGTGGGGTTGTGCCTAGTGTTTTCACCCGCAACATATTGATTCACTCTTTCTGCAAAGTCGGAAACTTGAGTCTGGCACTGCATTTCTTAAGAAATACTCAAATTGATACTGTTTCCTATAACACTCTCATTTGGGGCTTCTCCCAACAAGGAATGCCTTATCAAGCTTTTGGATTTTTGTCTCAAATGCTGCGGAGGGCTATATTCATAGATTCTTATACTTGCAATTTACTTGTTAACGGGTTTTGCCGAATTGGCCTAGTAGAGTATGCAGAATGGGTTATGGATAATTTGGCCAGTGGTGGAATTACTCAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGATATTGCAAAGCTGGACAAGTTAGCCGTGCACTCGAGTTAATTGAGAGAATGGAGAGGGATGGTCTTCTTCCTGATACTGTTACTTGTAATACTCTTGTTCACGTGGGGGATTTTGTAAATGCCAAGAGTACAATACATAACATTTTGAGATCTCAAGGAAACGAAGATGGCCCTCATAATGAGAGACGCCATGATCACAACTGGACTGGCAGTATGAATTTTAGACCAAATGTTATAACTCTCACCACTCTCATTAGCGCTTACAGTAAGCATCAAGGACTTGAAGAGGCTCTTTCTCTGTATGAGGAAATGGTTATGAATGGCATTTTCCCGGATGTTGTTACTTATAGCTCCATTATATATGGTCTTTGCAAGCATGGGAGGCTGTCAGAAGCCAAAGTGCTCTTAAGGGAGATGGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTTCACTACCCTCGTGGATTCTTTGTTTAAGGCAGGCTCTTCTAGGGAAGCTCTCATCCTTCAAGGCCAAATGGTGGTTCGCGGCCTAGTTTTTGATTTAGTAATTTGCACTGCTTTAATGGCTGGACTGTTTAAAGTTGGAAAAGTCGGCGAGGCTAAGGACCTGTTTCTAACAATTTCAAAGCTCAGCTTAGTTCCAAACTGTATCACCTATTCTGCTTTGATAAATGGGCATTGCAATTCAGGAGACATGGGCGGTGCAGAAGCAATACTTAGAGAAATGGAAGATAAACATGTTTTCCCCAATATTATCACTTATTCTTCTCTCATAAAGGGTTATATGAAGAAAGGAATGATTGGTGATGCTATTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTATTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTCAAGGCAGGTAAACAAGAATTTGCCCTTGATCTCTACAATGAAATGAAAATTAGAGGATTGGAGGACAACAGTTTCATATTTGATGCTTTTGTGAACAACATGAAAAAGTGCAGAAGGATGGAACAAGCTGAGGGATTAATTATGGATATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACATCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTTAACTTGTTCCAAGAAATGGCGGAGAAAAATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTCAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGGCTCCCGACTGTGTCACGTACAATACCCTGATTATTGCATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTGAACTTTGGAATGAGATGAAGGGTCAAGGGTTCATTTTAAATTCATTCACTTGTAACATTCTGATAGGAGGGCTTTGTGAAGAAGATAAGATTGAAAAAGCAATGGATGTCTTAAATGAAATGGTGGCTGTGGGTTCTCTCCCTACCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCTGATCCAATTTTGCAAATGCATCAGAAGCTTGTAAATATGGGGCTTGACCTCAATCATGATGTTTATAATAATCTCATCACTATCTTATGTAGGCTGGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGACTGGAAGAGGATTTTTAGCTGATACTATTACTTACAATGCCCTTATACGTGGATATGGTATGAGCAGCCATCTAAAAAGGGCTTTTGCTACACACTCAAAGATGCTGGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGTTTGATGACAAGGGCAGATGAATTATTTAGTGAAATGAAGAATAGAGGCTTTCTTCCTAATGCTTCCACATATGATATATTGGTTTCCGGCTATGGTAAGATTGGAAATAAGAAGGAAGCCATAAGGCGTTATTGTGAAATGGTAAGCAAAAGTTTTGTTCCCAATACTAGCACCTACAATGTGCTTATTAGTGATTTTGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGGCAAGGGGTGCCTGTCCTAATTCTTCAACATACAGCATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTGCGAAAGTCATACCGAGCTGAGGCAAAGAGATTATTAGCCGAGATGAATGAGAAAGGGTATGTTCCAGGTGGAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGGCTGATGCTCAGAGGCTATTAAAGGAACTGTACATCAGCAAGAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1011

Amino Acids

112.69

Weight (kDa)

8.86

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 128	3.6e-07	PPR repeat family
PPR_2	PF13041	145 - 193	2.7e-12	PPR repeat family
PPR_3	PF13812	203 - 259	5.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	211 - 243	1.9e-09	PPR repeat
PPR_2	PF13041	215 - 259	6e-13	PPR repeat family
PPR	PF01535	219 - 247	7.5e-08	PPR repeat
PPR_3	PF13812	298 - 345	6.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	301 - 350	6.1e-16	PPR repeat family
PPR	PF01535	304 - 334	4.3e-06	PPR repeat
PPR_1	PF12854	332 - 365	1.2e-13	PPR repeat
PPR_2	PF13041	336 - 385	1.4e-14	PPR repeat family
PPR	PF01535	339 - 369	6.4e-08	PPR repeat
PPR_2	PF13041	407 - 455	7.9e-10	PPR repeat family
PPR_long	PF17177	428 - 529	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	439 - 470	3.1e-09	PPR repeat
PPR_2	PF13041	441 - 488	8.5e-13	PPR repeat family
PPR_3	PF13812	441 - 488	8.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	473 - 505	6.6e-08	PPR repeat
PPR_2	PF13041	476 - 525	4.2e-14	PPR repeat family
PPR	PF01535	479 - 509	2.1e-06	PPR repeat
PPR_2	PF13041	511 - 548	4.2e-07	PPR repeat family
PPR_3	PF13812	571 - 626	4.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	582 - 629	3.2e-10	PPR repeat family
PPR_long	PF17177	600 - 748	3.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	617 - 664	1.6e-10	PPR repeat family
PPR_1	PF12854	647 - 679	7.7e-13	PPR repeat
PPR_2	PF13041	650 - 698	9.5e-17	PPR repeat family
PPR	PF01535	653 - 683	4.6e-09	PPR repeat
PPR_1	PF12854	682 - 714	5.8e-06	PPR repeat
PPR_2	PF13041	686 - 731	1.9e-10	PPR repeat family
PPR_2	PF13041	759 - 802	2.4e-09	PPR repeat family
TPR_24	PF23276	762 - 886	8.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	779 - 837	1.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	791 - 837	4.4e-11	PPR repeat family
PPR_long	PF17177	804 - 938	2.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	825 - 873	7.3e-13	PPR repeat family
PPR_3	PF13812	849 - 905	6.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	863 - 909	1.1e-09	PPR repeat family
PPR_1	PF12854	892 - 924	5e-06	PPR repeat
PPR_2	PF13041	895 - 944	4e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770
fragaria_vesca	FvH4_7g02371
malus_domestica	MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1
prunus_persica	Prupe.2G007100_v2.0.a1
pyrus_communis	pycom03g09690 pycom11g13400
rosa_chinensis	RchiOBHm_Chr1g0384651
rosa_laevigata	RLG00000008173 RLG00000026023
rosa_multiflora	Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024
rosa_roxburghii	Rroxscaffold_4G00276490
rosa_rugosa	Rorug01G0450400
rosa_samantha	Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700
rosa_wichuraiana	Rw1G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	911, 2280
Acc36I	ACCTGC	1 cut(s)	1568
AccB1I	GGYRCC	1 cut(s)	2780
AccB7I	CCANNNNNTGG	2 cut(s)	1198, 1825
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	1 cut(s)	1206
AciI	CCGC	7 cut(s)	177, 355, 520, 1206, 1380, 1829, 1888
AclWI	GGATC	1 cut(s)	2210
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	3 cut(s)	892, 1589, 2056
AcvI	CACGTG	1 cut(s)	778
AcyI	GRCGYC	1 cut(s)	862
AfaI	GTAC	5 cut(s)	805, 1964, 2489, 2941, 3017
AfeI	AGCGCT	1 cut(s)	934
AfiI	CCNNNNNNNGG	5 cut(s)	169, 1198, 1825, 2749, 2884
AflII	CTTAAG	2 cut(s)	415, 1081
AflIII	ACRYGT	1 cut(s)	1417
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	4 cut(s)	51, 2318, 2929, 2974
AjuI	GAANNNNNNNTTGG	2 cut(s)	1185, 1217
Alw21I	GWGCWC	2 cut(s)	706, 1080
Alw26I	GTCTC	4 cut(s)	513, 853, 1126, 1365
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	1 cut(s)	2210
AlwNI	CAGNNNCTG	1 cut(s)	2519
Ama87I	CYCGRG	1 cut(s)	707
Aor51HI	AGCGCT	1 cut(s)	934
AoxI	GGCC	8 cut(s)	171, 226, 583, 621, 844, 1189, 1207, 2325
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	3 cut(s)	517, 2415, 2842
ApoI	RAATTY	3 cut(s)	892, 1589, 2056
AseI	ATTAAT	1 cut(s)	1709
AspLEI	GCGC	2 cut(s)	9, 935
AspS9I	GGNCC	3 cut(s)	845, 1285, 2506
AsuC2I	CCSGG	1 cut(s)	1007
AsuHPI	GGTGA	7 cut(s)	119, 257, 343, 910, 1324, 1496, 2009
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	2 cut(s)	1285, 2506
BaeGI	GKGCMC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	2780
BauI	CACGAG	1 cut(s)	1136
BbrPI	CACGTG	1 cut(s)	778
BbsI	GAAGAC	3 cut(s)	41, 282, 731
Bbv12I	GWGCWC	2 cut(s)	706, 1080
BbvCI	CCTCAGC	3 cut(s)	1701, 2460, 2883
BbvI	GCAGC	3 cut(s)	504, 2427, 2854
BceAI	ACGGC	1 cut(s)	684
BciT130I	CCWGG	4 cut(s)	53, 2320, 2931, 2976
BciVI	GTATCC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	1007
BcoDI	GTCTC	4 cut(s)	513, 853, 1126, 1365
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	8 cut(s)	39, 342, 587, 1167, 1211, 2691, 2748, 2970
BfmI	CTRYAG	2 cut(s)	1987, 2331
BfoI	RGCGCY	1 cut(s)	936
BfrI	CTTAAG	2 cut(s)	415, 1081
BfuAI	ACCTGC	1 cut(s)	1568
BfuI	GTATCC	1 cut(s)	310
BglI	GCCNNNNNGGC	1 cut(s)	582
BglII	AGATCT	1 cut(s)	824
BisI	GCNGC	6 cut(s)	178, 518, 1207, 1889, 2416, 2843
BlpI	GCTNAGC	1 cut(s)	1310
BlsI	GCNGC	6 cut(s)	179, 519, 1208, 1890, 2417, 2844
Bme1390I	CCNGG	5 cut(s)	53, 1007, 2320, 2931, 2976
Bme18I	GGWCC	2 cut(s)	1285, 2506
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	3 cut(s)	845, 1285, 2506
BmiI	GGNNCC	3 cut(s)	1947, 2507, 2782
BmrFI	CCNGG	5 cut(s)	53, 1007, 2320, 2931, 2976
BmsI	GCATC	9 cut(s)	309, 955, 1477, 1645, 2179, 2242, 2442, 2757, 2980
BpiI	GAAGAC	3 cut(s)	41, 282, 731
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu10I	CCTNAGC	5 cut(s)	1281, 1701, 2460, 2724, 2883
Bpu1102I	GCTNAGC	1 cut(s)	1310
BpuEI	CTTGAG	2 cut(s)	415, 813
BpuMI	CCSGG	1 cut(s)	1007
BsaAI	YACGTR	3 cut(s)	778, 1962, 2399
BsaHI	GRCGYC	1 cut(s)	862
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 2846, 2876
Bsc4I	CCNNNNNNNGG	5 cut(s)	169, 1198, 1825, 2749, 2884
Bse1I	ACTGG	5 cut(s)	624, 881, 886, 1927, 2356
Bse3DI	GCAATG	2 cut(s)	1357, 2124
BseBI	CCWGG	4 cut(s)	53, 2320, 2931, 2976
BseLI	CCNNNNNNNGG	5 cut(s)	169, 1198, 1825, 2749, 2884
BseMI	GCAATG	2 cut(s)	1357, 2124
BseNI	ACTGG	5 cut(s)	624, 881, 886, 1927, 2356
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	3 cut(s)	504, 2427, 2854
BseYI	CCCAGC	1 cut(s)	2308
BsgI	GTGCAG	2 cut(s)	1404, 1702
Bsh1236I	CGCG	1 cut(s)	1206
BshFI	GGCC	8 cut(s)	173, 228, 585, 623, 846, 1191, 1209, 2327
BshNI	GGYRCC	1 cut(s)	2780
BsiHKAI	GWGCWC	2 cut(s)	706, 1080
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	1007, 2610
BslI	CCNNNNNNNGG	5 cut(s)	169, 1198, 1825, 2749, 2884
BsmAI	GTCTC	4 cut(s)	513, 853, 1126, 1365
BsmBI	CGTCTC	1 cut(s)	853
BsmI	GAATGC	2 cut(s)	486, 1982
BsnI	GGCC	8 cut(s)	173, 228, 585, 623, 846, 1191, 1209, 2327
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	706, 1080
Bsp1407I	TGTACA	1 cut(s)	3015
Bsp143I	GATC	5 cut(s)	59, 824, 868, 1600, 2215
Bsp1720I	GCTNAGC	1 cut(s)	1310
BspACI	CCGC	7 cut(s)	177, 355, 520, 1206, 1380, 1829, 1888
BspANI	GGCC	8 cut(s)	173, 228, 585, 623, 846, 1191, 1209, 2327
BspFNI	CGCG	1 cut(s)	1206
BspHI	TCATGA	1 cut(s)	2269
BspLI	GGNNCC	3 cut(s)	1947, 2507, 2782
BspMAI	CTGCAG	1 cut(s)	1991
BspMI	ACCTGC	1 cut(s)	1568
BspPI	GGATC	1 cut(s)	2210
BspQI	GCTCTTC	2 cut(s)	1168, 2203
BspT107I	GGYRCC	1 cut(s)	2780
BspTI	CTTAAG	2 cut(s)	415, 1081
BsrDI	GCAATG	2 cut(s)	1357, 2124
BsrGI	TGTACA	1 cut(s)	3015
BsrI	ACTGG	5 cut(s)	624, 881, 886, 1927, 2356
BssMI	GATC	5 cut(s)	59, 824, 868, 1600, 2215
BssNI	GRCGYC	1 cut(s)	862
BssSI	CACGAG	1 cut(s)	1136
Bst2BI	CACGAG	1 cut(s)	1136
Bst2UI	CCWGG	4 cut(s)	53, 2320, 2931, 2976
Bst6I	CTCTTC	5 cut(s)	954, 1168, 2203, 2337, 2350
BstACI	GRCGYC	1 cut(s)	862
BstAFI	CTTAAG	2 cut(s)	415, 1081
BstAPI	GCANNNNNTGC	1 cut(s)	2780
BstAUI	TGTACA	1 cut(s)	3015
BstBAI	YACGTR	3 cut(s)	778, 1962, 2399
BstC8I	GCNNGC	7 cut(s)	11, 27, 175, 1049, 1159, 2457, 2772
BstFNI	CGCG	1 cut(s)	1206
BstH2I	RGCGCY	1 cut(s)	936
BstHHI	GCGC	2 cut(s)	9, 935
BstKTI	GATC	5 cut(s)	62, 827, 871, 1603, 2218
BstMAI	GTCTC	4 cut(s)	513, 853, 1126, 1365
BstMBI	GATC	5 cut(s)	59, 824, 868, 1600, 2215
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 582, 1057, 1244, 2239, 2780, 2839
BstNI	CCWGG	4 cut(s)	53, 2320, 2931, 2976
BstNSI	RCATGY	1 cut(s)	1421
BstSCI	CCNGG	5 cut(s)	51, 1005, 2318, 2929, 2974
BstSFI	CTRYAG	2 cut(s)	1987, 2331
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	1 cut(s)	1206
BstV1I	GCAGC	3 cut(s)	504, 2427, 2854
BstV2I	GAAGAC	3 cut(s)	41, 282, 731
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	8 cut(s)	173, 228, 585, 623, 846, 1191, 1209, 2327
BtsI	GCAGTG	2 cut(s)	404, 1233
BtsIMutI	CAGTG	5 cut(s)	280, 404, 631, 1233, 2001
BveI	ACCTGC	1 cut(s)	1568
Cac8I	GCNNGC	7 cut(s)	11, 27, 175, 1049, 1159, 2457, 2772
CaiI	CAGNNNCTG	1 cut(s)	2519
CciI	TCATGA	1 cut(s)	2269
CfoI	GCGC	2 cut(s)	9, 935
Cfr13I	GGNCC	3 cut(s)	845, 1285, 2506
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	5 cut(s)	804, 1963, 2488, 2940, 3016
CviAII	CATG	7 cut(s)	224, 866, 1052, 1375, 1418, 1672, 2270
CviQI	GTAC	5 cut(s)	804, 1963, 2488, 2940, 3016
DpnI	GATC	5 cut(s)	61, 826, 870, 1602, 2217
DpnII	GATC	5 cut(s)	59, 824, 868, 1600, 2215
DraI	TTTAAA	3 cut(s)	1258, 1783, 2055
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	5 cut(s)	954, 1168, 2203, 2337, 2350
EarI	CTCTTC	5 cut(s)	954, 1168, 2203, 2337, 2350
EciI	GGCGGA	1 cut(s)	1844
Eco47I	GGWCC	2 cut(s)	1285, 2506
Eco47III	AGCGCT	1 cut(s)	934
Eco72I	CACGTG	1 cut(s)	778
Eco88I	CYCGRG	1 cut(s)	707
EcoO109I	RGGNCCY	2 cut(s)	1285, 2506
EcoRII	CCWGG	4 cut(s)	51, 2318, 2929, 2974
EcoT22I	ATGCAT	1 cut(s)	2235
Esp3I	CGTCTC	1 cut(s)	853
FaeI	CATG	7 cut(s)	227, 869, 1055, 1378, 1421, 1675, 2273
FalI	AAGNNNNNCTT	6 cut(s)	951, 983, 1298, 1330, 1380, 1412
FatI	CATG	7 cut(s)	223, 865, 1051, 1374, 1417, 1671, 2269
FauI	CCCGC	1 cut(s)	362
FauNDI	CATATG	2 cut(s)	2593, 3032
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	6 cut(s)	178, 518, 1207, 1889, 2416, 2843
Fsp4HI	GCNGC	6 cut(s)	178, 518, 1207, 1889, 2416, 2843
FspBI	CTAG	8 cut(s)	39, 342, 587, 1167, 1211, 2691, 2748, 2970
GlaI	GCGC	2 cut(s)	8, 934
GluI	GCNGC	6 cut(s)	178, 518, 1207, 1889, 2416, 2843
GsaI	CCCAGC	1 cut(s)	2312
HaeII	RGCGCY	1 cut(s)	936
HaeIII	GGCC	8 cut(s)	173, 228, 585, 623, 846, 1191, 1209, 2327
HapII	CCGG	2 cut(s)	1007, 2610
HgaI	GACGC	1 cut(s)	870
HhaI	GCGC	2 cut(s)	9, 935
Hin1I	GRCGYC	1 cut(s)	862
Hin1II	CATG	7 cut(s)	227, 869, 1055, 1378, 1421, 1675, 2273
Hin6I	GCGC	2 cut(s)	7, 933
HinP1I	GCGC	2 cut(s)	7, 933
HincII	GTYRAC	2 cut(s)	565, 1753
HindII	GTYRAC	2 cut(s)	565, 1753
HindIII	AAGCTT	2 cut(s)	492, 2240
HinfI	GANTC	8 cut(s)	124, 183, 253, 367, 397, 539, 1142, 1796
HpaI	GTTAAC	2 cut(s)	565, 1753
HpaII	CCGG	2 cut(s)	1007, 2610
HphI	GGTGA	7 cut(s)	119, 257, 343, 910, 1324, 1496, 2009
Hpy166II	GTNNAC	7 cut(s)	44, 565, 704, 775, 1583, 1666, 1753
Hpy188I	TCNGA	8 cut(s)	316, 389, 1066, 1729, 1767, 2079, 2238, 2997
Hpy188III	TCNNGA	7 cut(s)	641, 746, 1368, 1742, 1870, 1949, 2270
Hpy8I	GTNNAC	7 cut(s)	44, 565, 704, 775, 1583, 1666, 1753
HpyCH4IV	ACGT	4 cut(s)	777, 1961, 2398, 2486
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 582, 1057, 1244, 2239, 2780, 2839
HpySE526I	ACGT	4 cut(s)	777, 1961, 2398, 2486
Hsp92I	GRCGYC	1 cut(s)	862
Hsp92II	CATG	7 cut(s)	227, 869, 1055, 1378, 1421, 1675, 2273
HspAI	GCGC	2 cut(s)	7, 933
Ksp22I	TGATCA	1 cut(s)	868
KspAI	GTTAAC	2 cut(s)	565, 1753
Kzo9I	GATC	5 cut(s)	59, 824, 868, 1600, 2215
LguI	GCTCTTC	2 cut(s)	1168, 2203
LmnI	GCTCC	4 cut(s)	94, 1031, 1951, 2752
Lsp1109I	GCAGC	3 cut(s)	504, 2427, 2854
LweI	GCATC	9 cut(s)	309, 955, 1477, 1645, 2179, 2242, 2442, 2757, 2980
MaeI	CTAG	8 cut(s)	39, 342, 587, 1167, 1211, 2691, 2748, 2970
MaeII	ACGT	4 cut(s)	777, 1961, 2398, 2486
MaeIII	GTNAC	6 cut(s)	754, 1015, 1957, 1997, 2069, 2167
MalI	GATC	5 cut(s)	61, 826, 870, 1602, 2217
MboI	GATC	5 cut(s)	59, 824, 868, 1600, 2215
MfeI	CAATTG	1 cut(s)	1800
MflI	RGATCY	1 cut(s)	824
MhlI	GDGCHC	2 cut(s)	706, 1080
MlsI	TGGCCA	1 cut(s)	623
MluNI	TGGCCA	1 cut(s)	623
MlyI	GAGTC	3 cut(s)	118, 406, 1805
MmeI	TCCRAC	2 cut(s)	367, 1243
Mox20I	TGGCCA	1 cut(s)	623
Mph1103I	ATGCAT	1 cut(s)	2235
MscI	TGGCCA	1 cut(s)	623
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	623
MspCI	CTTAAG	2 cut(s)	415, 1081
MspI	CCGG	2 cut(s)	1007, 2610
MspR9I	CCNGG	5 cut(s)	53, 1007, 2320, 2931, 2976
MunI	CAATTG	1 cut(s)	1800
Mva1269I	GAATGC	2 cut(s)	486, 1982
MvaI	CCWGG	4 cut(s)	53, 2320, 2931, 2976
MvnI	CGCG	1 cut(s)	1206
MwoI	GCNNNNNNNGC	7 cut(s)	200, 582, 1057, 1244, 2239, 2780, 2839
NciI	CCSGG	1 cut(s)	1007
NdeI	CATATG	2 cut(s)	2593, 3032
NdeII	GATC	5 cut(s)	59, 824, 868, 1600, 2215
NlaIII	CATG	7 cut(s)	227, 869, 1055, 1378, 1421, 1675, 2273
NlaIV	GGNNCC	3 cut(s)	1947, 2507, 2782
NmeAIII	GCCGAG	1 cut(s)	2929
NmuCI	GTSAC	2 cut(s)	1957, 1997
NsiI	ATGCAT	1 cut(s)	2235
NspI	RCATGY	1 cut(s)	1421
PaeR7I	CTCGAG	1 cut(s)	707
PagI	TCATGA	1 cut(s)	2269
PciI	ACATGT	1 cut(s)	1417
PciSI	GCTCTTC	2 cut(s)	1168, 2203
PctI	GAATGC	2 cut(s)	486, 1982
PfeI	GAWTC	5 cut(s)	183, 253, 367, 539, 1142
PflFI	GACNNNGTC	1 cut(s)	1955
PflMI	CCANNNNNTGG	2 cut(s)	1198, 1825
PfoI	TCCNGGA	1 cut(s)	1005
PkrI	GCNGC	6 cut(s)	179, 519, 1208, 1890, 2417, 2844
PleI	GAGTC	3 cut(s)	118, 405, 1804
PmaCI	CACGTG	1 cut(s)	778
PmlI	CACGTG	1 cut(s)	778
PpsI	GAGTC	3 cut(s)	118, 405, 1804
Ppu21I	YACGTR	3 cut(s)	778, 1962, 2399
PpuMI	RGGWCCY	2 cut(s)	1285, 2506
PscI	ACATGT	1 cut(s)	1417
PshBI	ATTAAT	1 cut(s)	1709
PsiI	TTATAA	2 cut(s)	911, 2280
Psp5II	RGGWCCY	2 cut(s)	1285, 2506
Psp6I	CCWGG	4 cut(s)	51, 2318, 2929, 2974
PspCI	CACGTG	1 cut(s)	778
PspFI	CCCAGC	1 cut(s)	2308
PspGI	CCWGG	4 cut(s)	51, 2318, 2929, 2974
PspN4I	GGNNCC	3 cut(s)	1947, 2507, 2782
PspPI	GGNCC	3 cut(s)	845, 1285, 2506
PspPPI	RGGWCCY	2 cut(s)	1285, 2506
PspXI	VCTCGAGB	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	1991
PstNI	CAGNNNCTG	1 cut(s)	2519
PsuI	RGATCY	1 cut(s)	824
PsyI	GACNNNGTC	1 cut(s)	1955
RsaI	GTAC	5 cut(s)	805, 1964, 2489, 2941, 3017
RsaNI	GTAC	5 cut(s)	804, 1963, 2488, 2940, 3016
RseI	CAYNNNNRTG	1 cut(s)	273
SapI	GCTCTTC	2 cut(s)	1168, 2203
SatI	GCNGC	6 cut(s)	178, 518, 1207, 1889, 2416, 2843
Sau3AI	GATC	5 cut(s)	59, 824, 868, 1600, 2215
Sau96I	GGNCC	3 cut(s)	845, 1285, 2506
SchI	GAGTC	3 cut(s)	118, 406, 1805
ScrFI	CCNGG	5 cut(s)	53, 1007, 2320, 2931, 2976
SduI	GDGCHC	2 cut(s)	706, 1080
SfaNI	GCATC	9 cut(s)	309, 955, 1477, 1645, 2179, 2242, 2442, 2757, 2980
SfcI	CTRYAG	2 cut(s)	1987, 2331
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	2 cut(s)	1285, 2506
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	5 cut(s)	394, 415, 707, 828, 1081
SmoI	CTYRAG	5 cut(s)	394, 415, 707, 828, 1081
SpeI	ACTAGT	1 cut(s)	38
SsiI	CCGC	7 cut(s)	177, 355, 520, 1206, 1380, 1829, 1888
SspI	AATATT	3 cut(s)	1432, 2479, 2494
SspMI	CTAG	8 cut(s)	39, 342, 587, 1167, 1211, 2691, 2748, 2970
StyD4I	CCNGG	5 cut(s)	51, 1005, 2318, 2929, 2974
TaiI	ACGT	4 cut(s)	780, 1964, 2401, 2489
TaqI	TCGA	2 cut(s)	58, 708
TatI	WGTACW	2 cut(s)	803, 3015
TauI	GCSGC	3 cut(s)	180, 1209, 1891
TfiI	GAWTC	5 cut(s)	183, 253, 367, 539, 1142
TscAI	CASTG	5 cut(s)	280, 411, 631, 1240, 2008
TseFI	GTSAC	2 cut(s)	1957, 1997
TseI	GCWGC	3 cut(s)	517, 2415, 2842
Tsp45I	GTSAC	2 cut(s)	1957, 1997
TspRI	CASTG	5 cut(s)	280, 411, 631, 1240, 2008
Tth111I	GACNNNGTC	1 cut(s)	1955
Van91I	CCANNNNNTGG	2 cut(s)	1198, 1825
Vha464I	CTTAAG	2 cut(s)	415, 1081
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	2 cut(s)	1285, 2506
VspI	ATTAAT	1 cut(s)	1709
XapI	RAATTY	3 cut(s)	892, 1589, 2056
XceI	RCATGY	1 cut(s)	1421
XhoI	CTCGAG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	8 cut(s)	39, 342, 587, 1167, 1211, 2691, 2748, 2970
Zsp2I	ATGCAT	1 cut(s)	2235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.