RLG00000026023

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006142
Physical Location & Seq
Forward (+)
64699 .. 69831
5133 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026023

Sequence Viewer

Length: 3060 bp
ATGATGCGCCAGCGTTTGAAGAAGCAAGCCAAGTTCCTGGCTCGATCTTTGAGTTCCTCCTCGTCCCACTCATTTGGCAAGCCATTCTTTGCTCCCCAAAACTACTACTCCATCCCACCATCCAAGACTCACCTCTATTCATCCTTCTTTTGCACCCTTATACACCTCTACTTGGCCTGCGGCAGATTCTCCCATGCTTCCCACGCCTTCTTCTCTATGCGAAGTCATGGCCTCGTTCCTGTTCTGCCTCTTTGGAATCGGCTTCTTCACCATTTCAGTGCCTCTGGTTTGTCTTCTCAGGTATCCCTTCTCTACTCTGAGATGCTCTCCTGTGGGGTTGTGCCTAGTGTTTTCACCCGCAACATATTGATTCACTCTTTCTGCAAAGTCGGAAACTTGAGTCTGGCACTGCATTTCTTAAGAAATAATACTCAAATTGATACTGTTTCCTATAACACTCTCATTTGGGCCTTCTCCCAACAAGGAATGCCCCATCAAGCTTTTGGATTTTTGTCTCAAATGCTGCGCAGGGCTATATTCATAGATTCTTATACTTGCAATTTACTAGTTCACGGGTTTTGCCGAATTGGCCTAGTAGAGTATGCAGAATGGGTTATGCATAATTTGGTCAGTGCTGGAATTACTCAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGATATTGCAAAGCTGGACAAGTTAGCCGTGCACTCGAGTTAATTGAGAGAATGGAGAGGGCTGGTCTTCTTCCTGATACTGTTACTTATAATACTCTTGTTCATGGGTTTTGTCACGTGGGGGATTTTGCAAATGCCAAGAGTACAATACATAACATTTTGAGATCTCAAGGAAACGAAGATGGCCCTCATAATGAGAGAGAAAGAGGCCATGATCAGAACTGGACTGGCTGTATGAATTTTAGACCAAATGTTATAACTCTCACCACTCTCATTAGCGCTTACAGTAAGCATCAAGGACATGAAGAGGCTCTTTCTCTGTATGAGGAAATGGTTATGAATGGCATTTTCCCGGATGTTGTTACATATAGCTCCATTATATATGGTCTTTGCAAGCGTGGGAGGCTGTCAGAAGCCAAAGTGCTCTTAAGGGAGATGGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTTCACTACCCTCGTGGATTCTTTGTTTAAGGCAGGCTCTTCTAGGGAAGCTCTCATCCTTCAAGGCCAAATGGTGGTTCGCGGCCTAGTTTTTGATTTAGTAATTTGCACTGCTTTAATGGCTGGACTGTTTAAAGTTGGAAAAGTCGGCGAGGCTAAGGACCTGTTTCAAACAATTTCAAAGCTCAGCTTAGTTCCAAACTGTATCACCTATTCTGCTTTGATAAATGGGCATTGCAATTCAGGAGACATGGGCGGTGCAGAAGCAATACTTGGAGAAATGGAAGATAAACATGTTTTCCCCAATATTATCACTTATTCTTCTCTCATAAAGGGTTATGTGAAGAAAGGAATGATTGGTGATGCTATTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTATTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTTAAGGCAGGTAAACAAGAATTTGCCCTTGATCTCTACAATGAAATGAAAATTAGAGGATTGGAGGACAACAGTTTCATATTTGATGCTTTTGTGAACAACATGAAAAAGTGCAGAAGGATGGAACAAGCTGAGGGATTAATTATGGATATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACATCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTTAACTTGTTCCAAGAAATGGCGGAGAAAAATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTCAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGGCTCCCGACTGTGTCACGTACAATACCCTGATTATTGCATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTGAACTTTGGACTGAGATGAAGGGTCAAGGGCTCATTTTAAATTCATTCACTTGTAACATTCTGATAAGAGGGCTTTGTGAAGAAGATAAGACTGAAAAAGCAATGGATGTCTTAAATGAAATGGCGGCTGTGGGTTCTCTCCCTACCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCGGATCCAATTTTGCAAATGCATCAGAAGCTTGTAAGTATGGGGCTTGACCTCAATCATGATGTTTATAATAATCTCATCACTATCTTATGTAGGCTGGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGACTGGAAGAGGATTTTTAGCTGATACTATTACTTACAATGCCCTTATACGTGGATATGGTATGAGCAGCCATCTAAAAAGGGCTTTTGCTACACACTCAAAGATGCTGGCTGACGGAGTTTCTCCAAATATTGAAACGTATAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGTTTGATGACAAAGGCAGATGAATTATTTAATGAAATGCAGAATAGAGGCTTTCTTCCTAATGCTTCCACATATGATATATTGGTCTCCGGCTATGGTAAGATTGGAAATAAGAAGGAAGCCATAAGGCGTTATTGTGAAATGGTAAGCAACAGTTTTGTTCCCAATACTAGCACCTACAATGTGCTTATTAGTGATTTTGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGGCAAGGGGTGCCTGTCCTAATTCTTCAACATACAGCATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTGCGAAAGTCATACCGAGCGGAGGCAAAGAGATTATTAGCCGAGATGAATGAGAAAGGGTATGTTCCAGGTGGAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGGCCAGGAAAGAAGGCTGATGCTCAGAGGCTATTAAAGGAACTGTACATCAGCAAGAACATATGA

Protein Analysis

1020

Amino Acids

113.55

Weight (kDa)

8.84

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 85 - 129 3.6e-07 PPR repeat family
PPR_2 PF13041 147 - 195 1.2e-12 PPR repeat family
PPR_3 PF13812 205 - 260 4.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 213 - 245 1.8e-09 PPR repeat
PPR_2 PF13041 217 - 265 2.1e-17 PPR repeat family
PPR PF01535 221 - 249 1.4e-07 PPR repeat
PPR_1 PF12854 248 - 272 2.8e-07 PPR repeat
PPR_3 PF13812 306 - 353 9.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 309 - 358 8.2e-16 PPR repeat family
PPR PF01535 312 - 342 7.1e-06 PPR repeat
PPR_1 PF12854 340 - 373 2.1e-13 PPR repeat
PPR_2 PF13041 344 - 393 2.1e-14 PPR repeat family
PPR PF01535 347 - 377 2.5e-07 PPR repeat
PPR_2 PF13041 415 - 463 1.6e-10 PPR repeat family
PPR_long PF17177 433 - 537 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 439 - 498 6.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 447 - 478 1.9e-08 PPR repeat
PPR_2 PF13041 452 - 498 6.7e-12 PPR repeat family
PPR_1 PF12854 481 - 513 4.4e-08 PPR repeat
PPR_2 PF13041 484 - 533 7.3e-14 PPR repeat family
PPR PF01535 487 - 517 8.9e-07 PPR repeat
PPR_2 PF13041 519 - 556 4.2e-07 PPR repeat family
PPR_3 PF13812 579 - 634 4.7e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 590 - 637 3.2e-10 PPR repeat family
PPR_long PF17177 608 - 746 6.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 625 - 672 1.6e-10 PPR repeat family
PPR_1 PF12854 655 - 687 4.1e-12 PPR repeat
PPR_2 PF13041 658 - 706 2.6e-16 PPR repeat family
PPR PF01535 661 - 691 4.5e-08 PPR repeat
PPR_long PF17177 677 - 791 4.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 690 - 721 6.4e-06 PPR repeat
PPR_2 PF13041 694 - 739 8.8e-10 PPR repeat family
PPR_long PF17177 737 - 879 4.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 767 - 810 2.4e-09 PPR repeat family
TPR_24 PF23276 770 - 895 4.3e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 787 - 845 1.4e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 799 - 845 7.8e-11 PPR repeat family
PPR_long PF17177 812 - 946 5.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 833 - 881 2e-13 PPR repeat family
PPR_3 PF13812 857 - 913 5.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 875 - 917 1e-07 PPR repeat family
PPR_1 PF12854 901 - 932 6.4e-06 PPR repeat
PPR_2 PF13041 903 - 952 4.1e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 768, 935, 2304
Acc16I TGCGCA 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 1592
AccB1I GGYRCC 1 cut(s) 2804
AccB7I CCANNNNNTGG 2 cut(s) 1222, 1849
AccBSI CCGCTC 2 cut(s) 2237, 2906
AccII CGCG 1 cut(s) 1230
AciI CCGC 9 cut(s) 180, 358, 1230, 1404, 1853, 1912, 2165, 2237, 2906
AclWI GGATC 2 cut(s) 2234, 2247
AcsI RAATTY 3 cut(s) 916, 1613, 2080
AcvI CACGTG 1 cut(s) 796
AfaI GTAC 4 cut(s) 823, 1988, 2965, 3041
AfeI AGCGCT 1 cut(s) 958
AfiI CCNNNNNNNGG 6 cut(s) 172, 1222, 1849, 2773, 2908, 2994
AflII CTTAAG 2 cut(s) 418, 1105
AflIII ACRYGT 1 cut(s) 1441
AgsI TTSAA 8 cut(s) 19, 1211, 1319, 1329, 2042, 2223, 2507, 2823
AhlI ACTAGT 1 cut(s) 565
AjnI CCWGG 4 cut(s) 36, 2342, 2953, 2998
AjuI GAANNNNNNNTTGG 4 cut(s) 1209, 1241, 1404, 1436
Alw21I GWGCWC 2 cut(s) 712, 1104
Alw26I GTCTC 4 cut(s) 519, 1150, 1389, 2635
Alw44I GTGCAC 1 cut(s) 708
AlwI GGATC 2 cut(s) 2234, 2247
AlwNI CAGNNNCTG 1 cut(s) 2543
Ama87I CYCGRG 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 958
ApaLI GTGCAC 1 cut(s) 708
ApeKI GCWGC 3 cut(s) 523, 2439, 2866
ApoI RAATTY 3 cut(s) 916, 1613, 2080
AseI ATTAAT 1 cut(s) 1733
AspLEI GCGC 3 cut(s) 9, 528, 959
AspS9I GGNCC 4 cut(s) 468, 863, 1309, 2530
AsuC2I CCSGG 1 cut(s) 1031
AsuHPI GGTGA 7 cut(s) 122, 260, 346, 934, 1348, 1520, 2033
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 2 cut(s) 1309, 2530
BaeGI GKGCMC 1 cut(s) 712
BamHI GGATCC 1 cut(s) 2239
BanI GGYRCC 1 cut(s) 2804
BanII GRGCYC 1 cut(s) 2073
BauI CACGAG 1 cut(s) 1160
BbrPI CACGTG 1 cut(s) 796
BbsI GAAGAC 2 cut(s) 285, 737
Bbv12I GWGCWC 2 cut(s) 712, 1104
BbvCI CCTCAGC 1 cut(s) 1725
BbvI GCAGC 3 cut(s) 510, 2451, 2878
BceAI ACGGC 1 cut(s) 690
BciT130I CCWGG 4 cut(s) 38, 2344, 2955, 3000
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 1 cut(s) 1031
BcoDI GTCTC 4 cut(s) 519, 1150, 1389, 2635
BcuI ACTAGT 1 cut(s) 565
BfaI CTAG 8 cut(s) 345, 566, 593, 1191, 1235, 2715, 2772, 2994
BfmI CTRYAG 2 cut(s) 2011, 2355
BfoI RGCGCY 1 cut(s) 960
BfrI CTTAAG 2 cut(s) 418, 1105
BfuAI ACCTGC 1 cut(s) 1592
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 588
BglII AGATCT 1 cut(s) 842
BisI GCNGC 7 cut(s) 181, 524, 1231, 1913, 2166, 2440, 2867
BlpI GCTNAGC 1 cut(s) 1334
BlsI GCNGC 7 cut(s) 182, 525, 1232, 1914, 2167, 2441, 2868
Bme1390I CCNGG 5 cut(s) 38, 1031, 2344, 2955, 3000
Bme18I GGWCC 2 cut(s) 1309, 2530
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 4 cut(s) 468, 863, 1309, 2530
BmiI GGNNCC 4 cut(s) 1971, 2241, 2531, 2806
BmrFI CCNGG 5 cut(s) 38, 1031, 2344, 2955, 3000
BmsI GCATC 9 cut(s) 312, 979, 1501, 1669, 2203, 2266, 2466, 2781, 3004
BpiI GAAGAC 2 cut(s) 285, 737
BplI GAGNNNNNCTC 2 cut(s) 311, 343
Bpu10I CCTNAGC 3 cut(s) 1305, 1725, 2748
Bpu1102I GCTNAGC 1 cut(s) 1334
BpuEI CTTGAG 2 cut(s) 418, 831
BpuMI CCSGG 1 cut(s) 1031
BsaAI YACGTR 3 cut(s) 796, 1986, 2423
BsaI GGTCTC 1 cut(s) 2635
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 2870, 2900
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 1222, 1849, 2773, 2908, 2994
Bse1I ACTGG 4 cut(s) 905, 910, 1951, 2380
Bse3DI GCAATG 2 cut(s) 1381, 2148
BseBI CCWGG 4 cut(s) 38, 2344, 2955, 3000
BseGI GGATG 9 cut(s) 111, 119, 140, 655, 1039, 1203, 1719, 1801, 2152
BseLI CCNNNNNNNGG 6 cut(s) 172, 1222, 1849, 2773, 2908, 2994
BseMI GCAATG 2 cut(s) 1381, 2148
BseMII CTCAG 9 cut(s) 309, 311, 659, 1348, 1716, 1743, 2043, 2202, 3032
BseNI ACTGG 4 cut(s) 905, 910, 1951, 2380
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 712
BseXI GCAGC 3 cut(s) 510, 2451, 2878
BseYI CCCAGC 1 cut(s) 2332
BsgI GTGCAG 2 cut(s) 1428, 1726
Bsh1236I CGCG 1 cut(s) 1230
BshNI GGYRCC 1 cut(s) 2804
BsiHKAI GWGCWC 2 cut(s) 712, 1104
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 2 cut(s) 1031, 2634
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 6 cut(s) 172, 1222, 1849, 2773, 2908, 2994
BsmAI GTCTC 4 cut(s) 519, 1150, 1389, 2635
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 2 cut(s) 492, 2006
Bso31I GGTCTC 1 cut(s) 2635
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 3 cut(s) 712, 1104, 2073
Bsp1407I TGTACA 1 cut(s) 3039
Bsp143I GATC 5 cut(s) 44, 842, 892, 1624, 2239
Bsp1720I GCTNAGC 1 cut(s) 1334
BspACI CCGC 9 cut(s) 180, 358, 1230, 1404, 1853, 1912, 2165, 2237, 2906
BspCNI CTCAG 9 cut(s) 310, 310, 658, 1347, 1717, 1744, 2044, 2201, 3031
BspFNI CGCG 1 cut(s) 1230
BspHI TCATGA 1 cut(s) 2293
BspLI GGNNCC 4 cut(s) 1971, 2241, 2531, 2806
BspMAI CTGCAG 1 cut(s) 2015
BspMI ACCTGC 1 cut(s) 1592
BspPI GGATC 2 cut(s) 2234, 2247
BspQI GCTCTTC 2 cut(s) 1192, 2227
BspT107I GGYRCC 1 cut(s) 2804
BspTI CTTAAG 2 cut(s) 418, 1105
BspTNI GGTCTC 1 cut(s) 2635
BsrBI CCGCTC 2 cut(s) 2237, 2906
BsrDI GCAATG 2 cut(s) 1381, 2148
BsrGI TGTACA 1 cut(s) 3039
BsrI ACTGG 4 cut(s) 905, 910, 1951, 2380
BssMI GATC 5 cut(s) 44, 842, 892, 1624, 2239
BssSI CACGAG 1 cut(s) 1160
Bst2BI CACGAG 1 cut(s) 1160
Bst2UI CCWGG 4 cut(s) 38, 2344, 2955, 3000
Bst6I CTCTTC 5 cut(s) 978, 1192, 2227, 2361, 2374
BstAFI CTTAAG 2 cut(s) 418, 1105
BstAPI GCANNNNNTGC 1 cut(s) 2804
BstAUI TGTACA 1 cut(s) 3039
BstBAI YACGTR 3 cut(s) 796, 1986, 2423
BstC8I GCNNGC 8 cut(s) 11, 27, 80, 178, 1073, 1183, 2481, 2796
BstENI CCTNNNNNAGG 1 cut(s) 2992
BstF5I GGATG 9 cut(s) 111, 119, 140, 655, 1039, 1203, 1719, 1801, 2152
BstFNI CGCG 1 cut(s) 1230
BstH2I RGCGCY 1 cut(s) 960
BstHHI GCGC 3 cut(s) 9, 528, 959
BstKTI GATC 5 cut(s) 47, 845, 895, 1627, 2242
BstMAI GTCTC 4 cut(s) 519, 1150, 1389, 2635
BstMBI GATC 5 cut(s) 44, 842, 892, 1624, 2239
BstMWI GCNNNNNNNGC 7 cut(s) 203, 588, 1081, 1268, 2263, 2804, 2863
BstNI CCWGG 4 cut(s) 38, 2344, 2955, 3000
BstNSI RCATGY 1 cut(s) 1445
BstSCI CCNGG 5 cut(s) 36, 1029, 2342, 2953, 2998
BstSFI CTRYAG 2 cut(s) 2011, 2355
BstSLI GKGCMC 1 cut(s) 712
BstUI CGCG 1 cut(s) 1230
BstV1I GCAGC 3 cut(s) 510, 2451, 2878
BstV2I GAAGAC 2 cut(s) 285, 737
BstX2I RGATCY 2 cut(s) 842, 2239
BstXI CCANNNNNNTGG 2 cut(s) 37, 74
BstYI RGATCY 2 cut(s) 842, 2239
BsuI GTATCC 1 cut(s) 313
BtsCI GGATG 9 cut(s) 111, 119, 140, 655, 1039, 1203, 1719, 1801, 2152
BtsI GCAGTG 2 cut(s) 407, 1257
BtsIMutI CAGTG 5 cut(s) 283, 407, 637, 1257, 2025
BveI ACCTGC 1 cut(s) 1592
Cac8I GCNNGC 8 cut(s) 11, 27, 80, 178, 1073, 1183, 2481, 2796
CaiI CAGNNNCTG 1 cut(s) 2543
CciI TCATGA 1 cut(s) 2293
CfoI GCGC 3 cut(s) 9, 528, 959
Cfr13I GGNCC 4 cut(s) 468, 863, 1309, 2530
Csp6I GTAC 4 cut(s) 822, 1987, 2964, 3040
CviAII CATG 9 cut(s) 194, 227, 782, 890, 980, 1399, 1442, 1696, 2294
CviQI GTAC 4 cut(s) 822, 1987, 2964, 3040
DpnI GATC 5 cut(s) 46, 844, 894, 1626, 2241
DpnII GATC 5 cut(s) 44, 842, 892, 1624, 2239
DraI TTTAAA 3 cut(s) 1282, 1807, 2079
Eam1104I CTCTTC 5 cut(s) 978, 1192, 2227, 2361, 2374
EarI CTCTTC 5 cut(s) 978, 1192, 2227, 2361, 2374
EciI GGCGGA 1 cut(s) 1868
Eco24I GRGCYC 1 cut(s) 2073
Eco31I GGTCTC 1 cut(s) 2635
Eco47I GGWCC 2 cut(s) 1309, 2530
Eco47III AGCGCT 1 cut(s) 958
Eco72I CACGTG 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 713
EcoNI CCTNNNNNAGG 1 cut(s) 2992
EcoO109I RGGNCCY 2 cut(s) 1309, 2530
EcoRII CCWGG 4 cut(s) 36, 2342, 2953, 2998
EcoT22I ATGCAT 2 cut(s) 621, 2259
EcoT38I GRGCYC 1 cut(s) 2073
FaeI CATG 9 cut(s) 197, 230, 785, 893, 983, 1402, 1445, 1699, 2297
FalI AAGNNNNNCTT 8 cut(s) 71, 103, 975, 1007, 1322, 1354, 1404, 1436
FaqI GGGAC 1 cut(s) 49
FatI CATG 9 cut(s) 193, 226, 781, 889, 979, 1398, 1441, 1695, 2293
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 2 cut(s) 2617, 3056
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 7 cut(s) 181, 524, 1231, 1913, 2166, 2440, 2867
FokI GGATG 9 cut(s) 98, 106, 127, 662, 1046, 1190, 1726, 1808, 2159
FriOI GRGCYC 1 cut(s) 2073
Fsp4HI GCNGC 7 cut(s) 181, 524, 1231, 1913, 2166, 2440, 2867
FspBI CTAG 8 cut(s) 345, 566, 593, 1191, 1235, 2715, 2772, 2994
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 3 cut(s) 8, 527, 958
GluI GCNGC 7 cut(s) 181, 524, 1231, 1913, 2166, 2440, 2867
GsaI CCCAGC 1 cut(s) 2336
HaeII RGCGCY 1 cut(s) 960
HapII CCGG 2 cut(s) 1031, 2634
HhaI GCGC 3 cut(s) 9, 528, 959
Hin1II CATG 9 cut(s) 197, 230, 785, 893, 983, 1402, 1445, 1699, 2297
Hin6I GCGC 3 cut(s) 7, 526, 957
HinP1I GCGC 3 cut(s) 7, 526, 957
HincII GTYRAC 1 cut(s) 1777
HindII GTYRAC 1 cut(s) 1777
HindIII AAGCTT 2 cut(s) 498, 2264
HinfI GANTC 8 cut(s) 127, 186, 256, 370, 400, 545, 1166, 1820
HpaI GTTAAC 1 cut(s) 1777
HpaII CCGG 2 cut(s) 1031, 2634
HphI GGTGA 7 cut(s) 122, 260, 346, 934, 1348, 1520, 2033
Hpy166II GTNNAC 5 cut(s) 571, 710, 1607, 1690, 1777
Hpy188I TCNGA 9 cut(s) 319, 392, 897, 1090, 1753, 1791, 2103, 2262, 3021
Hpy188III TCNNGA 7 cut(s) 647, 752, 1392, 1766, 1894, 1973, 2294
Hpy8I GTNNAC 5 cut(s) 571, 710, 1607, 1690, 1777
HpyCH4IV ACGT 4 cut(s) 795, 1985, 2422, 2510
HpyF10VI GCNNNNNNNGC 7 cut(s) 203, 588, 1081, 1268, 2263, 2804, 2863
HpySE526I ACGT 4 cut(s) 795, 1985, 2422, 2510
Hsp92II CATG 9 cut(s) 197, 230, 785, 893, 983, 1402, 1445, 1699, 2297
HspAI GCGC 3 cut(s) 7, 526, 957
Ksp22I TGATCA 1 cut(s) 892
KspAI GTTAAC 1 cut(s) 1777
Kzo9I GATC 5 cut(s) 44, 842, 892, 1624, 2239
LguI GCTCTTC 2 cut(s) 1192, 2227
LmnI GCTCC 4 cut(s) 97, 1055, 1975, 2776
Lsp1109I GCAGC 3 cut(s) 510, 2451, 2878
LweI GCATC 9 cut(s) 312, 979, 1501, 1669, 2203, 2266, 2466, 2781, 3004
MaeI CTAG 8 cut(s) 345, 566, 593, 1191, 1235, 2715, 2772, 2994
MaeII ACGT 4 cut(s) 795, 1985, 2422, 2510
MaeIII GTNAC 7 cut(s) 760, 791, 1039, 1981, 2021, 2093, 2191
MalI GATC 5 cut(s) 46, 844, 894, 1626, 2241
MbiI CCGCTC 2 cut(s) 2237, 2906
MboI GATC 5 cut(s) 44, 842, 892, 1624, 2239
MfeI CAATTG 1 cut(s) 1824
MflI RGATCY 2 cut(s) 842, 2239
MhlI GDGCHC 3 cut(s) 712, 1104, 2073
MlyI GAGTC 3 cut(s) 121, 409, 1829
MmeI TCCRAC 2 cut(s) 370, 1267
Mph1103I ATGCAT 2 cut(s) 621, 2259
MslI CAYNNNNRTG 1 cut(s) 276
MspCI CTTAAG 2 cut(s) 418, 1105
MspI CCGG 2 cut(s) 1031, 2634
MspR9I CCNGG 5 cut(s) 38, 1031, 2344, 2955, 3000
MunI CAATTG 1 cut(s) 1824
Mva1269I GAATGC 2 cut(s) 492, 2006
MvaI CCWGG 4 cut(s) 38, 2344, 2955, 3000
MvnI CGCG 1 cut(s) 1230
MwoI GCNNNNNNNGC 7 cut(s) 203, 588, 1081, 1268, 2263, 2804, 2863
NciI CCSGG 1 cut(s) 1031
NdeI CATATG 2 cut(s) 2617, 3056
NdeII GATC 5 cut(s) 44, 842, 892, 1624, 2239
NlaIII CATG 9 cut(s) 197, 230, 785, 893, 983, 1402, 1445, 1699, 2297
NlaIV GGNNCC 4 cut(s) 1971, 2241, 2531, 2806
NmeAIII GCCGAG 1 cut(s) 2953
NmuCI GTSAC 3 cut(s) 791, 1981, 2021
NsbI TGCGCA 1 cut(s) 527
NsiI ATGCAT 2 cut(s) 621, 2259
NspI RCATGY 1 cut(s) 1445
PaeR7I CTCGAG 1 cut(s) 713
PagI TCATGA 1 cut(s) 2293
PciI ACATGT 1 cut(s) 1441
PciSI GCTCTTC 2 cut(s) 1192, 2227
PctI GAATGC 2 cut(s) 492, 2006
PfeI GAWTC 5 cut(s) 186, 256, 370, 545, 1166
PflFI GACNNNGTC 1 cut(s) 1979
PflMI CCANNNNNTGG 2 cut(s) 1222, 1849
PfoI TCCNGGA 1 cut(s) 1029
PkrI GCNGC 7 cut(s) 182, 525, 1232, 1914, 2167, 2441, 2868
PleI GAGTC 3 cut(s) 121, 408, 1828
PmaCI CACGTG 1 cut(s) 796
PmlI CACGTG 1 cut(s) 796
PpsI GAGTC 3 cut(s) 121, 408, 1828
Ppu21I YACGTR 3 cut(s) 796, 1986, 2423
PpuMI RGGWCCY 2 cut(s) 1309, 2530
PscI ACATGT 1 cut(s) 1441
PshBI ATTAAT 1 cut(s) 1733
PsiI TTATAA 3 cut(s) 768, 935, 2304
Psp5II RGGWCCY 2 cut(s) 1309, 2530
Psp6I CCWGG 4 cut(s) 36, 2342, 2953, 2998
PspCI CACGTG 1 cut(s) 796
PspFI CCCAGC 1 cut(s) 2332
PspGI CCWGG 4 cut(s) 36, 2342, 2953, 2998
PspN4I GGNNCC 4 cut(s) 1971, 2241, 2531, 2806
PspPI GGNCC 4 cut(s) 468, 863, 1309, 2530
PspPPI RGGWCCY 2 cut(s) 1309, 2530
PspXI VCTCGAGB 1 cut(s) 713
PstI CTGCAG 1 cut(s) 2015
PstNI CAGNNNCTG 1 cut(s) 2543
PsuI RGATCY 2 cut(s) 842, 2239
PsyI GACNNNGTC 1 cut(s) 1979
RsaI GTAC 4 cut(s) 823, 1988, 2965, 3041
RsaNI GTAC 4 cut(s) 822, 1987, 2964, 3040
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 2 cut(s) 1192, 2227
SatI GCNGC 7 cut(s) 181, 524, 1231, 1913, 2166, 2440, 2867
Sau3AI GATC 5 cut(s) 44, 842, 892, 1624, 2239
Sau96I GGNCC 4 cut(s) 468, 863, 1309, 2530
SchI GAGTC 3 cut(s) 121, 409, 1829
ScrFI CCNGG 5 cut(s) 38, 1031, 2344, 2955, 3000
SduI GDGCHC 3 cut(s) 712, 1104, 2073
SfaNI GCATC 9 cut(s) 312, 979, 1501, 1669, 2203, 2266, 2466, 2781, 3004
SfcI CTRYAG 2 cut(s) 2011, 2355
Sfr274I CTCGAG 1 cut(s) 713
SinI GGWCC 2 cut(s) 1309, 2530
SlaI CTCGAG 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 5 cut(s) 397, 418, 713, 846, 1105
SmoI CTYRAG 5 cut(s) 397, 418, 713, 846, 1105
SpeI ACTAGT 1 cut(s) 565
SsiI CCGC 9 cut(s) 180, 358, 1230, 1404, 1853, 1912, 2165, 2237, 2906
SspI AATATT 3 cut(s) 1456, 2503, 2518
SspMI CTAG 8 cut(s) 345, 566, 593, 1191, 1235, 2715, 2772, 2994
StyD4I CCNGG 5 cut(s) 36, 1029, 2342, 2953, 2998
TaiI ACGT 4 cut(s) 798, 1988, 2425, 2513
TaqI TCGA 2 cut(s) 43, 714
TatI WGTACW 2 cut(s) 821, 3039
TauI GCSGC 4 cut(s) 183, 1233, 1915, 2168
TfiI GAWTC 5 cut(s) 186, 256, 370, 545, 1166
TscAI CASTG 5 cut(s) 283, 414, 637, 1264, 2032
TseFI GTSAC 3 cut(s) 791, 1981, 2021
TseI GCWGC 3 cut(s) 523, 2439, 2866
Tsp45I GTSAC 3 cut(s) 791, 1981, 2021
TspGWI ACGGA 1 cut(s) 2502
TspRI CASTG 5 cut(s) 283, 414, 637, 1264, 2032
Tth111I GACNNNGTC 1 cut(s) 1979
Van91I CCANNNNNTGG 2 cut(s) 1222, 1849
Vha464I CTTAAG 2 cut(s) 418, 1105
VneI GTGCAC 1 cut(s) 708
VpaK11BI GGWCC 2 cut(s) 1309, 2530
VspI ATTAAT 1 cut(s) 1733
XagI CCTNNNNNAGG 1 cut(s) 2992
XapI RAATTY 3 cut(s) 916, 1613, 2080
XceI RCATGY 1 cut(s) 1445
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 713
XspI CTAG 8 cut(s) 345, 566, 593, 1191, 1235, 2715, 2772, 2994
Zsp2I ATGCAT 2 cut(s) 621, 2259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.