Rh1CG446400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006142
Physical Location & Seq
Reverse (-)
69743488 .. 69746547
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG446400.1

Sequence Viewer

Length: 2844 bp
ATGAATATGATGCGCCAGCGTTTGAAGAAGCAAGCCAAGACTAGTCTACTTTTCCTGGCTCGATCTTTGAGTTCCTCCTCGTCCCACTCATTTGGCTTTGCTCCCCAAAACTACTACTCCATCCCACCATCCAAGACTCACCTCTATTCATCCTTCTTTTGCACCCTTATACACCTCTACTTGGCCTGCGGCAGATTCTCCGATGCTTCCCACGCCTTCTTCTCTATGCGAAGTCATGGCCTCGTTCCTGTTCTGCCTCTTTGGAATCGGCTTCTTCACCATTTCAGTGCCTCTGGTTTGGCTTCTCAGGTATCCCTTCTCTACTCTGAGATGCTCTCCTGTGGGGTTGTGCCTAGTGTTTTCACCCGCAACATATTGATTCACTCTTTCTGCAAAGTCGGAAACTTGAGTTTGGCACTGCATTTCTTAAGAAATACTCAAATTGATACTGTTTCCTATAACACTCTCATTTGGGGCTTCTCCCAACAAGGAATGCCTTATCAAGCTTTTGGATTTTTGTCTCAAATGCTACGGAGGGCTATATTCATAGATTCTTATACTTGCAATTTACTAGTGAACGGGTTTTGCCGAATTGGCCTAGTAGAGTATGCAGAATGGGTTATGGATAATTTGGTCAGTGGAAACGAAGATGGCCCTCATAATGAGAGAGGCCATGATCAGAACTGGACTGGCAGTATGAATTTTAGACCAAATGTTATAACTCTCACCACTCTCATTAGCGCTTACAGTAAGCATCAAGGACTTGAAGAGGCTCTTTCTCTGTATGAGGAAATGGTTGTGAATGGCATTTTCCCGGATGTTGTTACTTATAGCTCCATTATATATGGTCTTTGCAAGCATGGGAGGCTGTCAGAAGCCAAAGTGCTCTTAAGGGAGATGGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTTCACTACCCTCGTGGATTCTTTGTTTAAGGCAGGCTCTTCTAGGGAAGCTCTCATCCTTCAAGGCCAAATGGTGGTTCGCGGCCTAGTTTTTGATTTAGTAATTTGCACTGCTTTAATGGCTGGACTGTTTAAAGTTGGAAAAGTCGGTGAGGCTAAGGACCTGTTTCGAACAATTTCAAAGCTGAGCTTAGTTCCAAACTGTATCACCTATTCTGCTTTGATAAATGGGCATTGCAATTCAGGAGACATGGGCGGTGCAGAAGCAATACTTAGAGAAATGGAAGATAAACATGTTTTCCCCAATATTATCACTTATTCTTCTCTCATAAAGGGTTATATGAAGAAAGGAATGATTGGTGATGCTATTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTATTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTTAAGGCAGGTAAACAGGAATTTGCCCTTGATCTCTACAATGAAATGAAAATTAGAGGATTGGAGGACAACAGTTTCATATTTGATGCTTTTGTGAACAACATGAAAAAGTGCAGAAGGATGGAACAAGCTGAGGGATTAATTATGGATATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACATCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTTAACTTGTTCCAAGAAATGGCGGAGAAAAATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTCAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGGCTCCCGACTGTGTCACGTACAATACCCTGATTATTGCATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTGAACTTTGGAATGAGATGAAGGGTCAAGGGTTCATTTTAAATTCATTCACTTGTAACATTCTGATAGGAGGGCTTTGTGAAGAAGATAAGATTGAAAAAGCAATGGATGTCTTAAATGAAATGGTGGCTGTGGGTTCTCTCCCTACCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCTGATCCAATTTTGCAAATGCATCAGAAGCTTGTAAGTATGGGGCTTGACCTCAATCATGATGTTTATAATAATCTCATCACTATCTTATGTAGGCTGGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGACTGGAAGAGGATTTTTAGCTGATACTATTACTTACAATGCCCTTATACGTGGATATGGTATGAGCAGCCATCTAAAAAGGGCTTTTGCTACACACTCAAAGATGCTGGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGTTTGATGACAAAGGCAGATGAATTATTTAGTGAAATGAAGAATAGAGGCTTTCTTCCTAATGCTTCCACATATGATATATTGGTTTCCGGCTATGGTAAGATTGGATATAAGAAGGAAGCCATAAGGCGTTATTGTGAAATGGTAAGCAAAAGTTTTGTTCCCAATACTAGCACCTACAATGTGCTTATTAGTGATTTTGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGGCAAGGGGTGCCTGTCCTAATTCTTCAACTTACAGCATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTGCGAAAGTCATACCGAGCTGAGGCAAAGAGATTATTAGCCGAGATGAATGAGAAAGGATATGTTCCAGGTGGAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGCCTGATGCTCAGAGGCTATTAAAGGAACTGTACATCAGCAAGAACATATGA

Protein Analysis

947

Amino Acids

105.71

Weight (kDa)

8.86

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 88 - 132 3.6e-07 PPR repeat family
PPR_2 PF13041 149 - 197 2.5e-12 PPR repeat family
PPR_3 PF13812 234 - 281 9.3e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 237 - 286 6e-16 PPR repeat family
PPR PF01535 240 - 270 5e-06 PPR repeat
PPR_long PF17177 249 - 350 8.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 268 - 301 1.1e-13 PPR repeat
PPR_2 PF13041 272 - 321 1.3e-14 PPR repeat family
PPR PF01535 275 - 305 5.9e-08 PPR repeat
PPR_2 PF13041 343 - 391 1.6e-10 PPR repeat family
PPR_long PF17177 362 - 465 4.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 367 - 424 2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 375 - 406 2.9e-09 PPR repeat
PPR_2 PF13041 380 - 424 6.7e-12 PPR repeat family
PPR PF01535 380 - 408 1e-05 PPR repeat
PPR_1 PF12854 409 - 441 6.1e-08 PPR repeat
PPR_2 PF13041 412 - 461 3.9e-14 PPR repeat family
PPR PF01535 415 - 445 2e-06 PPR repeat
PPR_2 PF13041 447 - 484 3.9e-07 PPR repeat family
PPR_3 PF13812 507 - 562 4.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 518 - 565 3e-10 PPR repeat family
PPR_long PF17177 536 - 684 3.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 553 - 600 1.5e-10 PPR repeat family
PPR_1 PF12854 583 - 615 7.2e-13 PPR repeat
PPR_2 PF13041 586 - 634 8.9e-17 PPR repeat family
PPR PF01535 589 - 619 4.3e-09 PPR repeat
PPR_1 PF12854 618 - 650 5.4e-06 PPR repeat
PPR_2 PF13041 622 - 667 1.7e-10 PPR repeat family
PPR_long PF17177 665 - 805 4.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 695 - 738 2.2e-09 PPR repeat family
PPR_3 PF13812 715 - 773 1.2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 727 - 773 4.1e-11 PPR repeat family
PPR_2 PF13041 761 - 809 1.9e-13 PPR repeat family
PPR_2 PF13041 799 - 845 2.6e-09 PPR repeat family
PPR_1 PF12854 828 - 860 4.7e-06 PPR repeat
PPR_2 PF13041 831 - 880 3.7e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 719, 2088
Acc36I ACCTGC 1 cut(s) 1376
AccB1I GGYRCC 1 cut(s) 2588
AccB7I CCANNNNNTGG 2 cut(s) 1006, 1633
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 1014
AciI CCGC 6 cut(s) 189, 367, 1014, 1188, 1637, 1696
AclWI GGATC 1 cut(s) 2018
AcsI RAATTY 3 cut(s) 700, 1397, 1864
AfaI GTAC 4 cut(s) 1772, 2297, 2749, 2825
AfeI AGCGCT 1 cut(s) 742
AfiI CCNNNNNNNGG 5 cut(s) 181, 1006, 1633, 2557, 2692
AflII CTTAAG 2 cut(s) 427, 889
AflIII ACRYGT 1 cut(s) 1225
AgsI TTSAA 9 cut(s) 25, 767, 995, 1113, 1826, 1919, 2007, 2291, 2607
AhlI ACTAGT 2 cut(s) 41, 571
AjnI CCWGG 4 cut(s) 54, 2126, 2737, 2782
AjuI GAANNNNNNNTTGG 2 cut(s) 993, 1025
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 3 cut(s) 525, 934, 1173
AlwI GGATC 1 cut(s) 2018
AlwNI CAGNNNCTG 1 cut(s) 2327
Aor51HI AGCGCT 1 cut(s) 742
AoxI GGCC 8 cut(s) 183, 238, 595, 652, 670, 997, 1015, 2133
ApeKI GCWGC 2 cut(s) 2223, 2650
ApoI RAATTY 3 cut(s) 700, 1397, 1864
AseI ATTAAT 1 cut(s) 1517
Asp700I GAANNNNTTC 1 cut(s) 1108
AspLEI GCGC 2 cut(s) 15, 743
AspS9I GGNCC 3 cut(s) 653, 1093, 2314
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 8 cut(s) 131, 269, 355, 718, 1094, 1132, 1304, 1817
AsuII TTCGAA 1 cut(s) 1102
AvaII GGWCC 2 cut(s) 1093, 2314
BanI GGYRCC 1 cut(s) 2588
BauI CACGAG 1 cut(s) 944
Bbv12I GWGCWC 1 cut(s) 888
BbvCI CCTCAGC 3 cut(s) 1509, 2268, 2691
BbvI GCAGC 2 cut(s) 2235, 2662
BciT130I CCWGG 4 cut(s) 56, 2128, 2739, 2784
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 3 cut(s) 525, 934, 1173
BcuI ACTAGT 2 cut(s) 41, 571
BfaI CTAG 9 cut(s) 42, 354, 572, 599, 975, 1019, 2499, 2556, 2778
BfmI CTRYAG 2 cut(s) 1795, 2139
BfoI RGCGCY 1 cut(s) 744
BfrI CTTAAG 2 cut(s) 427, 889
BfuAI ACCTGC 1 cut(s) 1376
BfuI GTATCC 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 594
BisI GCNGC 5 cut(s) 190, 1015, 1697, 2224, 2651
BlpI GCTNAGC 1 cut(s) 1118
BlsI GCNGC 5 cut(s) 191, 1016, 1698, 2225, 2652
Bme1390I CCNGG 5 cut(s) 56, 815, 2128, 2739, 2784
Bme18I GGWCC 2 cut(s) 1093, 2314
BmgT120I GGNCC 3 cut(s) 653, 1093, 2314
BmiI GGNNCC 3 cut(s) 1755, 2315, 2590
BmrFI CCNGG 5 cut(s) 56, 815, 2128, 2739, 2784
BplI GAGNNNNNCTC 2 cut(s) 320, 352
Bpu10I CCTNAGC 5 cut(s) 1089, 1509, 2268, 2532, 2691
Bpu1102I GCTNAGC 1 cut(s) 1118
Bpu14I TTCGAA 1 cut(s) 1102
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 2 cut(s) 1770, 2207
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 2654, 2684
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 1006, 1633, 2557, 2692
Bse1I ACTGG 4 cut(s) 689, 694, 1735, 2164
Bse3DI GCAATG 2 cut(s) 1165, 1932
BseBI CCWGG 4 cut(s) 56, 2128, 2739, 2784
BseGI GGATG 8 cut(s) 120, 128, 149, 823, 987, 1503, 1585, 1936
BseLI CCNNNNNNNGG 5 cut(s) 181, 1006, 1633, 2557, 2692
BseMI GCAATG 2 cut(s) 1165, 1932
BseMII CTCAG 9 cut(s) 318, 320, 1109, 1500, 1527, 1986, 2259, 2682, 2816
BseNI ACTGG 4 cut(s) 689, 694, 1735, 2164
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 2235, 2662
BseYI CCCAGC 1 cut(s) 2116
BsgI GTGCAG 2 cut(s) 1212, 1510
Bsh1236I CGCG 1 cut(s) 1014
BshFI GGCC 8 cut(s) 185, 240, 597, 654, 672, 999, 1017, 2135
BshNI GGYRCC 1 cut(s) 2588
BsiHKAI GWGCWC 1 cut(s) 888
BsiSI CCGG 2 cut(s) 815, 2418
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 5 cut(s) 181, 1006, 1633, 2557, 2692
BsmAI GTCTC 3 cut(s) 525, 934, 1173
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 2 cut(s) 498, 1790
BsnI GGCC 8 cut(s) 185, 240, 597, 654, 672, 999, 1017, 2135
Bsp119I TTCGAA 1 cut(s) 1102
Bsp1286I GDGCHC 1 cut(s) 888
Bsp1407I TGTACA 1 cut(s) 2823
Bsp143I GATC 4 cut(s) 62, 676, 1408, 2023
Bsp1720I GCTNAGC 1 cut(s) 1118
BspACI CCGC 6 cut(s) 189, 367, 1014, 1188, 1637, 1696
BspANI GGCC 8 cut(s) 185, 240, 597, 654, 672, 999, 1017, 2135
BspCNI CTCAG 9 cut(s) 319, 319, 1110, 1501, 1528, 1985, 2260, 2683, 2815
BspFNI CGCG 1 cut(s) 1014
BspHI TCATGA 1 cut(s) 2077
BspLI GGNNCC 3 cut(s) 1755, 2315, 2590
BspMAI CTGCAG 1 cut(s) 1799
BspMI ACCTGC 1 cut(s) 1376
BspPI GGATC 1 cut(s) 2018
BspQI GCTCTTC 2 cut(s) 976, 2011
BspT104I TTCGAA 1 cut(s) 1102
BspT107I GGYRCC 1 cut(s) 2588
BspTI CTTAAG 2 cut(s) 427, 889
BsrDI GCAATG 2 cut(s) 1165, 1932
BsrGI TGTACA 1 cut(s) 2823
BsrI ACTGG 4 cut(s) 689, 694, 1735, 2164
BssMI GATC 4 cut(s) 62, 676, 1408, 2023
BssSI CACGAG 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 944
Bst2UI CCWGG 4 cut(s) 56, 2128, 2739, 2784
Bst4CI ACNGT 9 cut(s) 451, 749, 1062, 1136, 1451, 1556, 1763, 2143, 2823
Bst6I CTCTTC 5 cut(s) 762, 976, 2011, 2145, 2158
BstAFI CTTAAG 2 cut(s) 427, 889
BstAPI GCANNNNNTGC 1 cut(s) 2588
BstAUI TGTACA 1 cut(s) 2823
BstBAI YACGTR 2 cut(s) 1770, 2207
BstBI TTCGAA 1 cut(s) 1102
BstC8I GCNNGC 7 cut(s) 17, 33, 187, 857, 967, 2265, 2580
BstF5I GGATG 8 cut(s) 120, 128, 149, 823, 987, 1503, 1585, 1936
BstFNI CGCG 1 cut(s) 1014
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 2 cut(s) 15, 743
BstKTI GATC 4 cut(s) 65, 679, 1411, 2026
BstMAI GTCTC 3 cut(s) 525, 934, 1173
BstMBI GATC 4 cut(s) 62, 676, 1408, 2023
BstMWI GCNNNNNNNGC 7 cut(s) 212, 594, 865, 1052, 2047, 2588, 2647
BstNI CCWGG 4 cut(s) 56, 2128, 2739, 2784
BstNSI RCATGY 1 cut(s) 1229
BstSCI CCNGG 5 cut(s) 54, 813, 2126, 2737, 2782
BstSFI CTRYAG 2 cut(s) 1795, 2139
BstUI CGCG 1 cut(s) 1014
BstV1I GCAGC 2 cut(s) 2235, 2662
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 8 cut(s) 185, 240, 597, 654, 672, 999, 1017, 2135
BtsCI GGATG 8 cut(s) 120, 128, 149, 823, 987, 1503, 1585, 1936
BtsI GCAGTG 2 cut(s) 416, 1041
BtsIMutI CAGTG 5 cut(s) 292, 416, 643, 1041, 1809
BveI ACCTGC 1 cut(s) 1376
Cac8I GCNNGC 7 cut(s) 17, 33, 187, 857, 967, 2265, 2580
CaiI CAGNNNCTG 1 cut(s) 2327
CciI TCATGA 1 cut(s) 2077
CfoI GCGC 2 cut(s) 15, 743
Cfr13I GGNCC 3 cut(s) 653, 1093, 2314
Csp6I GTAC 4 cut(s) 1771, 2296, 2748, 2824
CviAII CATG 7 cut(s) 236, 674, 860, 1183, 1226, 1480, 2078
CviQI GTAC 4 cut(s) 1771, 2296, 2748, 2824
DpnI GATC 4 cut(s) 64, 678, 1410, 2025
DpnII GATC 4 cut(s) 62, 676, 1408, 2023
DraI TTTAAA 3 cut(s) 1066, 1591, 1863
Eam1104I CTCTTC 5 cut(s) 762, 976, 2011, 2145, 2158
EarI CTCTTC 5 cut(s) 762, 976, 2011, 2145, 2158
EciI GGCGGA 1 cut(s) 1652
Eco47I GGWCC 2 cut(s) 1093, 2314
Eco47III AGCGCT 1 cut(s) 742
EcoO109I RGGNCCY 2 cut(s) 1093, 2314
EcoRII CCWGG 4 cut(s) 54, 2126, 2737, 2782
EcoT22I ATGCAT 1 cut(s) 2043
FaeI CATG 7 cut(s) 239, 677, 863, 1186, 1229, 1483, 2081
FalI AAGNNNNNCTT 6 cut(s) 759, 791, 1106, 1138, 1188, 1220
FaqI GGGAC 1 cut(s) 67
FatI CATG 7 cut(s) 235, 673, 859, 1182, 1225, 1479, 2077
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 2 cut(s) 2401, 2840
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 190, 1015, 1697, 2224, 2651
FokI GGATG 8 cut(s) 107, 115, 136, 830, 974, 1510, 1592, 1943
Fsp4HI GCNGC 5 cut(s) 190, 1015, 1697, 2224, 2651
FspBI CTAG 9 cut(s) 42, 354, 572, 599, 975, 1019, 2499, 2556, 2778
GlaI GCGC 2 cut(s) 14, 742
GluI GCNGC 5 cut(s) 190, 1015, 1697, 2224, 2651
GsaI CCCAGC 1 cut(s) 2120
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 8 cut(s) 185, 240, 597, 654, 672, 999, 1017, 2135
HapII CCGG 2 cut(s) 815, 2418
HhaI GCGC 2 cut(s) 15, 743
Hin1II CATG 7 cut(s) 239, 677, 863, 1186, 1229, 1483, 2081
Hin6I GCGC 2 cut(s) 13, 741
HinP1I GCGC 2 cut(s) 13, 741
HincII GTYRAC 1 cut(s) 1561
HindII GTYRAC 1 cut(s) 1561
HindIII AAGCTT 2 cut(s) 504, 2048
HinfI GANTC 7 cut(s) 136, 195, 265, 379, 551, 950, 1604
HpaI GTTAAC 1 cut(s) 1561
HpaII CCGG 2 cut(s) 815, 2418
HphI GGTGA 8 cut(s) 131, 269, 355, 718, 1094, 1132, 1304, 1817
Hpy166II GTNNAC 5 cut(s) 47, 577, 1391, 1474, 1561
Hpy188III TCNNGA 5 cut(s) 1176, 1550, 1678, 1757, 2078
Hpy8I GTNNAC 5 cut(s) 47, 577, 1391, 1474, 1561
HpyAV CCTTC 9 cut(s) 163, 226, 326, 943, 1001, 1488, 1837, 2125, 2437
HpyCH4III ACNGT 9 cut(s) 451, 749, 1062, 1136, 1451, 1556, 1763, 2143, 2823
HpyCH4IV ACGT 3 cut(s) 1769, 2206, 2294
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 594, 865, 1052, 2047, 2588, 2647
HpySE526I ACGT 3 cut(s) 1769, 2206, 2294
Hsp92II CATG 7 cut(s) 239, 677, 863, 1186, 1229, 1483, 2081
HspAI GCGC 2 cut(s) 13, 741
Ksp22I TGATCA 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 1561
Kzo9I GATC 4 cut(s) 62, 676, 1408, 2023
LguI GCTCTTC 2 cut(s) 976, 2011
LmnI GCTCC 4 cut(s) 106, 839, 1759, 2560
Lsp1109I GCAGC 2 cut(s) 2235, 2662
MaeI CTAG 9 cut(s) 42, 354, 572, 599, 975, 1019, 2499, 2556, 2778
MaeII ACGT 3 cut(s) 1769, 2206, 2294
MaeIII GTNAC 5 cut(s) 823, 1765, 1805, 1877, 1975
MalI GATC 4 cut(s) 64, 678, 1410, 2025
MboI GATC 4 cut(s) 62, 676, 1408, 2023
MfeI CAATTG 1 cut(s) 1608
MhlI GDGCHC 1 cut(s) 888
MlyI GAGTC 2 cut(s) 130, 1613
MmeI TCCRAC 2 cut(s) 379, 1051
Mph1103I ATGCAT 1 cut(s) 2043
MroXI GAANNNNTTC 1 cut(s) 1108
MslI CAYNNNNRTG 1 cut(s) 285
MspCI CTTAAG 2 cut(s) 427, 889
MspI CCGG 2 cut(s) 815, 2418
MspR9I CCNGG 5 cut(s) 56, 815, 2128, 2739, 2784
MunI CAATTG 1 cut(s) 1608
Mva1269I GAATGC 2 cut(s) 498, 1790
MvaI CCWGG 4 cut(s) 56, 2128, 2739, 2784
MvnI CGCG 1 cut(s) 1014
MwoI GCNNNNNNNGC 7 cut(s) 212, 594, 865, 1052, 2047, 2588, 2647
NciI CCSGG 1 cut(s) 815
NdeI CATATG 2 cut(s) 2401, 2840
NdeII GATC 4 cut(s) 62, 676, 1408, 2023
NlaIII CATG 7 cut(s) 239, 677, 863, 1186, 1229, 1483, 2081
NlaIV GGNNCC 3 cut(s) 1755, 2315, 2590
NmeAIII GCCGAG 1 cut(s) 2737
NmuCI GTSAC 2 cut(s) 1765, 1805
NsiI ATGCAT 1 cut(s) 2043
NspI RCATGY 1 cut(s) 1229
NspV TTCGAA 1 cut(s) 1102
PagI TCATGA 1 cut(s) 2077
PciI ACATGT 1 cut(s) 1225
PciSI GCTCTTC 2 cut(s) 976, 2011
PctI GAATGC 2 cut(s) 498, 1790
PdmI GAANNNNTTC 1 cut(s) 1108
PfeI GAWTC 5 cut(s) 195, 265, 379, 551, 950
PflFI GACNNNGTC 1 cut(s) 1763
PflMI CCANNNNNTGG 2 cut(s) 1006, 1633
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 5 cut(s) 191, 1016, 1698, 2225, 2652
PleI GAGTC 2 cut(s) 130, 1612
PpsI GAGTC 2 cut(s) 130, 1612
Ppu21I YACGTR 2 cut(s) 1770, 2207
PpuMI RGGWCCY 2 cut(s) 1093, 2314
PscI ACATGT 1 cut(s) 1225
PshBI ATTAAT 1 cut(s) 1517
PsiI TTATAA 2 cut(s) 719, 2088
Psp5II RGGWCCY 2 cut(s) 1093, 2314
Psp6I CCWGG 4 cut(s) 54, 2126, 2737, 2782
PspFI CCCAGC 1 cut(s) 2116
PspGI CCWGG 4 cut(s) 54, 2126, 2737, 2782
PspN4I GGNNCC 3 cut(s) 1755, 2315, 2590
PspPI GGNCC 3 cut(s) 653, 1093, 2314
PspPPI RGGWCCY 2 cut(s) 1093, 2314
PstI CTGCAG 1 cut(s) 1799
PstNI CAGNNNCTG 1 cut(s) 2327
PsyI GACNNNGTC 1 cut(s) 1763
RsaI GTAC 4 cut(s) 1772, 2297, 2749, 2825
RsaNI GTAC 4 cut(s) 1771, 2296, 2748, 2824
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 2 cut(s) 976, 2011
SatI GCNGC 5 cut(s) 190, 1015, 1697, 2224, 2651
Sau3AI GATC 4 cut(s) 62, 676, 1408, 2023
Sau96I GGNCC 3 cut(s) 653, 1093, 2314
SchI GAGTC 2 cut(s) 130, 1613
ScrFI CCNGG 5 cut(s) 56, 815, 2128, 2739, 2784
SduI GDGCHC 1 cut(s) 888
SfcI CTRYAG 2 cut(s) 1795, 2139
SfuI TTCGAA 1 cut(s) 1102
SinI GGWCC 2 cut(s) 1093, 2314
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 406, 427, 889
SmoI CTYRAG 3 cut(s) 406, 427, 889
SpeI ACTAGT 2 cut(s) 41, 571
SsiI CCGC 6 cut(s) 189, 367, 1014, 1188, 1637, 1696
SspI AATATT 3 cut(s) 1240, 2287, 2302
SspMI CTAG 9 cut(s) 42, 354, 572, 599, 975, 1019, 2499, 2556, 2778
StyD4I CCNGG 5 cut(s) 54, 813, 2126, 2737, 2782
TaaI ACNGT 9 cut(s) 451, 749, 1062, 1136, 1451, 1556, 1763, 2143, 2823
TaiI ACGT 3 cut(s) 1772, 2209, 2297
TaqI TCGA 2 cut(s) 61, 1102
TatI WGTACW 1 cut(s) 2823
TauI GCSGC 3 cut(s) 192, 1017, 1699
TfiI GAWTC 5 cut(s) 195, 265, 379, 551, 950
TscAI CASTG 5 cut(s) 292, 423, 643, 1048, 1816
TseFI GTSAC 2 cut(s) 1765, 1805
TseI GCWGC 2 cut(s) 2223, 2650
Tsp45I GTSAC 2 cut(s) 1765, 1805
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 5 cut(s) 292, 423, 643, 1048, 1816
Tth111I GACNNNGTC 1 cut(s) 1763
Van91I CCANNNNNTGG 2 cut(s) 1006, 1633
Vha464I CTTAAG 2 cut(s) 427, 889
VpaK11BI GGWCC 2 cut(s) 1093, 2314
VspI ATTAAT 1 cut(s) 1517
XapI RAATTY 3 cut(s) 700, 1397, 1864
XceI RCATGY 1 cut(s) 1229
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 1108
XspI CTAG 9 cut(s) 42, 354, 572, 599, 975, 1019, 2499, 2556, 2778
Zsp2I ATGCAT 1 cut(s) 2043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.