FvH4_7g02371

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006142
Physical Location & Seq
Forward (+)
2668440 .. 2671490
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02371.t1

Sequence Viewer

Length: 3051 bp
ATGAAGAAGCATGCCAGGAGTAGTCTCCTTTTCCTAGTTCGATCTTTGAGTTCCTCCTCATCCTACTCGTTTGTCAAGCCCAATACACGTTACCAACCCCAAAACCACTACATCCCACCATCCAAGAATCACCTCTATGCATCATTCTTTTGCACCCTCATACACCTCTACCTGGCCTGCGACAGATTCTCCAATGCTTCCGACGCCTTTTTCTCTATGCGAAGTCACGGCCTCGTTCCTGGTCTGCCTCTTTGGAATCGGCTTCTTCATCATTTCAATGTCTCTGGTTTGGCTTCTCAGGTATCCCTTCTTTACTCTGAGATGCTCTCCTGTGGGGTTGTGCCTAATGTTTTCACCCGCAACATAATGATTCACTCTCTCTGCAAAGTTGGAAACTTGAGTTTGGCACTGCATTTGTTGAGAAATAATCAAATTGATACTGTTTCCTATAATACTCTCATTTGGGGGTTCTCCCAACAAGGATGCCCTCATCAAGCTTTTGGGTTTTTGTCTCAAATGGTGCAGAGGGCTATATATATAGATTCTTATACTTGCAATTTACTAGTTAACGGGTTTTGTGGGGTTGGCTTAGTAGAGTATGCAGAATGGGTTATGGATAATTTTGTTGGTGGTGGAATTACTCGGGATGTTGTAGGTTTTAACACCTTGATTGCTGCATATTGCAAAGCTGGACAAGTTAGCCGTGCACTCGAGTTGATTGAGAAAATGGAGAGGGATGGTCTTGTTCCTGATACTGTTACTTATAATGCTCTTGTTCATGGGTTTTGTAATGTGGGGGATTTTTTAAAAGCCAAGAATACAATACATCAAATGTTGAGATCTCAAGGAAATGAAAATGGCCCTCATAATGATAGAGACCATGATCAGAACTGGATTGGCAGTATGAATCTTAAACCAAATGTCATAACTATAACCACTCTCATTAGTGCTTACAATAAGCAACAAGGGCTTGAAGAGGCTCTTTCTCTATATGAGGAAATGGTTATGAACGGCATTTTCCCGGATGTTGTCACATATAGCTCCATTATATATGGTCTTTGCAAGCATGGGAAGCTGTCAGAAGCCAAAGTTCTCTTAAAAGAGATAGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTACACTACCGTTGTGGATTCTTTGTTTAAGGCAGGTTCTCCCAGGGAAGCTCTTGTCCTTCAAAGCCAAATGGTGGTTCGCGGCCTGGTTTTTGATTTAGTAATTTGCACTGCTTTAATGGCTGGACTCTTTAAGGTTGGAAAACTCAGTGAGGGAAAGGACCTGTTTCAAAAAATATCAAAGCTCAGCTTAGTTCCAAACTGTATCACCTATTCTGCTTTGATAGATGGGCATTGTAATTCAGGAGACATGGGCAGTGCAGAAGCGATACTCAGAGAAATGGAGAAGAAACATGTTTTCCCGAATATTATCACTTATTCTTCTCTCATAAAGGGTTATATGAAGAAAGGAATGATTGATGATGCTGTTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTGTTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTTAAGGCAGGTAAACAAGAAGTTGCCCTTGATCTTTACAATGAAATGAAAATTAGAGGATTGGAGGATAACCATTTCATATTTGACGCTTTTGTGAACAACATGAAAAAGTGTGGGAGCATGGAAGAAGCTGAGGGATTAATTATGGATATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACGTCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTTAATTTGTTCCAAGAAATGGCGGAAAAAGATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTAAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGTCTCCTGACTGTGTCACGTACAATACCCTAATTATTGCGTCCTGCAGAGAGGGTGACCCTGTAAATGCTTTTGAACTTTGGAATGAGATGAAAGGTCAAGGGTTAATTTTAAATTCATTCACTTGTAACATTCTGATAGGTGGCCTTTGTAAAGAAGAGAAGATTGAGAAAGCAATGGATGTCTTAAATGAAATGGTAGCTGTGGGTTCTCTCCCTACCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAAACTAGAAGAGCTGATGCAATTTTGCAAATGCATCAGAATCTTGTAAATATGGGGCTTGACCTCAATCTTGATGTTTACAATAATCTCATTACTGTCTTATGTAGGCTAGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGAGTGGAAGAGGACTTTTAGCAGATACTATTACTTACAATGCCCTAATACGTGGATATGGTATAAGCAGCCATCTGAAAAGGGCTTTTGCTACACACTCAAAGATGCTCGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGTTTGATGAAAAAGGCAGATGAATTATTTAGTGAAATGAAGAATAGAGGCTTTATTCCTAATGCTTCCACATATGATATATTGGTTTCTGGCTATGGTAAGATTGGAAATAAGAAGGAAGCCATAAGGCGTTATTGTGAGATGGTAAGCAAAGGTTTTGTTCCCAATACTGGAACCTACAATGTGCTTATTAGTGATTTCGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAACTTATGAATGAGATGCAGGGAAGGGGTGCCTGTCCTAATTCTTCAACTTACAGCATACTAATCTCTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTTCGGAAGTCATACCGAGCTGAGGCAAAGAGATTATTAATAGAGATGAATGAGAAAGGGTATGTTCCAGGTGGAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGGCTGATGCTCAGAGACTATTAAAAGAACTGTACATCAGCAAGAACGTATGA

Protein Analysis

1017

Amino Acids

112.86

Weight (kDa)

8.67

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 129 6.8e-07 PPR repeat family
PPR_1 PF12854 112 - 141 8.4e-06 PPR repeat
PPR_2 PF13041 146 - 193 3e-12 PPR repeat family
PPR_3 PF13812 204 - 260 1.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 212 - 244 1.2e-09 PPR repeat
PPR_2 PF13041 215 - 264 2.7e-17 PPR repeat family
PPR PF01535 220 - 248 1e-07 PPR repeat
PPR_1 PF12854 246 - 278 7.3e-08 PPR repeat
PPR_3 PF13812 303 - 350 2.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 306 - 355 3.9e-15 PPR repeat family
PPR_3 PF13812 329 - 383 6.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 337 - 369 2e-11 PPR repeat
PPR_2 PF13041 341 - 390 3.1e-13 PPR repeat family
PPR PF01535 344 - 374 9.8e-07 PPR repeat
PPR_2 PF13041 412 - 460 1.8e-09 PPR repeat family
PPR_long PF17177 427 - 535 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 435 - 493 8.1e-11 Pentatricopeptide repeat domain
TPR_24 PF23276 439 - 544 5.9e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 444 - 475 1.5e-09 PPR repeat
PPR PF01535 449 - 478 7.1e-06 PPR repeat
PPR_2 PF13041 450 - 495 1.9e-12 PPR repeat family
PPR_1 PF12854 478 - 510 3.1e-09 PPR repeat
PPR_2 PF13041 481 - 530 8.7e-15 PPR repeat family
PPR PF01535 484 - 514 2.3e-07 PPR repeat
PPR_1 PF12854 512 - 545 2.9e-06 PPR repeat
PPR_2 PF13041 516 - 552 1.3e-07 PPR repeat family
PPR_3 PF13812 576 - 631 7.3e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 587 - 634 1.3e-09 PPR repeat family
PPR_long PF17177 605 - 748 4.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 610 - 664 1.7e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 622 - 669 1.1e-09 PPR repeat family
PPR_1 PF12854 652 - 684 1.9e-10 PPR repeat
PPR_2 PF13041 655 - 704 4.5e-15 PPR repeat family
PPR PF01535 658 - 688 5.4e-07 PPR repeat
PPR_1 PF12854 687 - 719 2.9e-07 PPR repeat
PPR_2 PF13041 691 - 736 5.1e-11 PPR repeat family
PPR PF01535 693 - 720 4.1e-06 PPR repeat
PPR_long PF17177 734 - 882 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 764 - 807 1.2e-09 PPR repeat family
TPR_24 PF23276 767 - 890 6.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 784 - 842 2.3e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 796 - 842 9e-11 PPR repeat family
PPR_2 PF13041 830 - 878 9.7e-14 PPR repeat family
PPR PF01535 834 - 863 8.1e-06 PPR repeat
PPR_3 PF13812 854 - 910 2.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 872 - 914 3.6e-08 PPR repeat family
PPR_3 PF13812 892 - 945 3.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 896 - 929 1.8e-06 PPR repeat
PPR_2 PF13041 900 - 949 5.5e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
Acc36I ACCTGC 2 cut(s) 1163, 1583
AccB1I GGYRCC 1 cut(s) 2795
AccB7I CCANNNNNTGG 2 cut(s) 1213, 1840
AccII CGCG 1 cut(s) 1221
AciI CCGC 4 cut(s) 358, 1221, 1844, 1903
AcsI RAATTY 1 cut(s) 2071
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 4 cut(s) 1979, 2504, 2956, 3032
AfiI CCNNNNNNNGG 6 cut(s) 172, 1213, 1840, 2705, 2764, 2899
AflIII ACRYGT 3 cut(s) 86, 1432, 1773
AgsI TTSAA 8 cut(s) 277, 974, 1202, 1310, 2033, 2214, 2498, 2814
AhlI ACTAGT 1 cut(s) 562
AjiI CACGTC 1 cut(s) 1776
AjnI CCWGG 8 cut(s) 14, 171, 238, 1181, 1224, 2333, 2944, 2989
AjuI GAANNNNNNNTTGG 2 cut(s) 1200, 1232
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 9 cut(s) 29, 286, 516, 870, 1141, 1380, 1782, 1965, 3007
Alw44I GTGCAC 1 cut(s) 705
AlwNI CAGNNNCTG 1 cut(s) 2534
Ama87I CYCGRG 2 cut(s) 642, 710
AoxI GGCC 6 cut(s) 174, 229, 859, 1222, 2101, 2340
ApaLI GTGCAC 1 cut(s) 705
ApeKI GCWGC 3 cut(s) 674, 2430, 2857
ApoI RAATTY 1 cut(s) 2071
AseI ATTAAT 2 cut(s) 1724, 2915
AspS9I GGNCC 3 cut(s) 860, 1300, 2521
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 4 cut(s) 122, 346, 1339, 2024
AvaI CYCGRG 2 cut(s) 642, 710
AvaII GGWCC 2 cut(s) 1300, 2521
BaeGI GKGCMC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 2795
Bbv12I GWGCWC 1 cut(s) 709
BbvCI CCTCAGC 3 cut(s) 1716, 2475, 2898
BbvI GCAGC 3 cut(s) 661, 2442, 2869
BccI CCATC 9 cut(s) 127, 731, 1361, 1519, 1571, 1777, 1781, 2442, 2671
BceAI ACGGC 3 cut(s) 244, 687, 1027
BciT130I CCWGG 8 cut(s) 16, 173, 240, 1183, 1226, 2335, 2946, 2991
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 1 cut(s) 1022
BcoDI GTCTC 9 cut(s) 29, 286, 516, 870, 1141, 1380, 1782, 1965, 3007
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 6 cut(s) 35, 563, 2220, 2324, 2763, 2985
BfmI CTRYAG 2 cut(s) 2002, 2346
BfuAI ACCTGC 2 cut(s) 1163, 1583
BfuI GTATCC 1 cut(s) 313
BglII AGATCT 1 cut(s) 839
BisI GCNGC 5 cut(s) 675, 1222, 1904, 2431, 2858
BlpI GCTNAGC 1 cut(s) 1325
BlsI GCNGC 5 cut(s) 676, 1223, 1905, 2432, 2859
Bme1390I CCNGG 9 cut(s) 16, 173, 240, 1022, 1183, 1226, 2335, 2946, 2991
Bme18I GGWCC 2 cut(s) 1300, 2521
BmeT110I CYCGRG 2 cut(s) 642, 710
BmgBI CACGTC 1 cut(s) 1776
BmgT120I GGNCC 3 cut(s) 860, 1300, 2521
BmiI GGNNCC 3 cut(s) 2522, 2710, 2797
BmrFI CCNGG 9 cut(s) 16, 173, 240, 1022, 1183, 1226, 2335, 2946, 2991
BplI GAGNNNNNCTC 2 cut(s) 311, 343
Bpu10I CCTNAGC 4 cut(s) 1716, 2475, 2739, 2898
Bpu1102I GCTNAGC 1 cut(s) 1325
BpuEI CTTGAG 2 cut(s) 418, 828
BpuMI CCSGG 1 cut(s) 1022
BsaAI YACGTR 2 cut(s) 1977, 2414
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 1181, 1182
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 2861, 2891
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 1213, 1840, 2705, 2764, 2899
Bse1I ACTGG 3 cut(s) 896, 1942, 2710
Bse3DI GCAATG 1 cut(s) 2139
BseBI CCWGG 8 cut(s) 16, 173, 240, 1183, 1226, 2335, 2946, 2991
BseDI CCNNGG 2 cut(s) 1181, 1182
BseGI GGATG 9 cut(s) 59, 111, 119, 488, 652, 742, 1030, 1792, 2143
BseLI CCNNNNNNNGG 6 cut(s) 172, 1213, 1840, 2705, 2764, 2899
BseMI GCAATG 1 cut(s) 2139
BseNI ACTGG 3 cut(s) 896, 1942, 2710
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 3 cut(s) 661, 2442, 2869
BsgI GTGCAG 2 cut(s) 542, 1419
Bsh1236I CGCG 1 cut(s) 1221
BshFI GGCC 6 cut(s) 176, 231, 861, 1224, 2103, 2342
BshNI GGYRCC 1 cut(s) 2795
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 2 cut(s) 642, 710
BsiSI CCGG 1 cut(s) 1022
BslI CCNNNNNNNGG 6 cut(s) 172, 1213, 1840, 2705, 2764, 2899
BsmAI GTCTC 9 cut(s) 29, 286, 516, 870, 1141, 1380, 1782, 1965, 3007
BsmBI CGTCTC 1 cut(s) 1782
BsnI GGCC 6 cut(s) 176, 231, 861, 1224, 2103, 2342
Bso31I GGTCTC 1 cut(s) 870
BsoBI CYCGRG 2 cut(s) 642, 710
Bsp1286I GDGCHC 1 cut(s) 709
Bsp1407I TGTACA 1 cut(s) 3030
Bsp143I GATC 4 cut(s) 41, 839, 883, 1615
Bsp1720I GCTNAGC 1 cut(s) 1325
BspACI CCGC 4 cut(s) 358, 1221, 1844, 1903
BspANI GGCC 6 cut(s) 176, 231, 861, 1224, 2103, 2342
BspFNI CGCG 1 cut(s) 1221
BspLI GGNNCC 3 cut(s) 2522, 2710, 2797
BspMAI CTGCAG 1 cut(s) 2006
BspMI ACCTGC 2 cut(s) 1163, 1583
BspQI GCTCTTC 1 cut(s) 2218
BspT107I GGYRCC 1 cut(s) 2795
BspTNI GGTCTC 1 cut(s) 870
BsrDI GCAATG 1 cut(s) 2139
BsrGI TGTACA 1 cut(s) 3030
BsrI ACTGG 3 cut(s) 896, 1942, 2710
BssECI CCNNGG 2 cut(s) 1181, 1182
BssMI GATC 4 cut(s) 41, 839, 883, 1615
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 8 cut(s) 16, 173, 240, 1183, 1226, 2335, 2946, 2991
Bst4CI ACNGT 9 cut(s) 442, 757, 1150, 1343, 1763, 1970, 2311, 2350, 3030
Bst6I CTCTTC 5 cut(s) 969, 2109, 2218, 2352, 2365
BstACI GRCGYC 1 cut(s) 204
BstAUI TGTACA 1 cut(s) 3030
BstBAI YACGTR 2 cut(s) 1977, 2414
BstC8I GCNNGC 4 cut(s) 12, 178, 1064, 2472
BstEII GGTNACC 1 cut(s) 2012
BstF5I GGATG 9 cut(s) 59, 111, 119, 488, 652, 742, 1030, 1792, 2143
BstFNI CGCG 1 cut(s) 1221
BstKTI GATC 4 cut(s) 44, 842, 886, 1618
BstMAI GTCTC 9 cut(s) 29, 286, 516, 870, 1141, 1380, 1782, 1965, 3007
BstMBI GATC 4 cut(s) 41, 839, 883, 1615
BstMWI GCNNNNNNNGC 5 cut(s) 203, 967, 1072, 1259, 2854
BstNI CCWGG 8 cut(s) 16, 173, 240, 1183, 1226, 2335, 2946, 2991
BstNSI RCATGY 2 cut(s) 14, 1436
BstPI GGTNACC 1 cut(s) 2012
BstSCI CCNGG 9 cut(s) 14, 171, 238, 1020, 1181, 1224, 2333, 2944, 2989
BstSFI CTRYAG 2 cut(s) 2002, 2346
BstSLI GKGCMC 1 cut(s) 709
BstUI CGCG 1 cut(s) 1221
BstV1I GCAGC 3 cut(s) 661, 2442, 2869
BstX2I RGATCY 1 cut(s) 839
BstYI RGATCY 1 cut(s) 839
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 6 cut(s) 176, 231, 861, 1224, 2103, 2342
BtrI CACGTC 1 cut(s) 1776
BtsCI GGATG 9 cut(s) 59, 111, 119, 488, 652, 742, 1030, 1792, 2143
BtsI GCAGTG 3 cut(s) 407, 1248, 1402
BtsIMutI CAGTG 4 cut(s) 407, 1248, 1294, 1402
BveI ACCTGC 2 cut(s) 1163, 1583
Cac8I GCNNGC 4 cut(s) 12, 178, 1064, 2472
CaiI CAGNNNCTG 1 cut(s) 2534
Cfr13I GGNCC 3 cut(s) 860, 1300, 2521
CseI GACGC 3 cut(s) 212, 1679, 1986
Csp6I GTAC 4 cut(s) 1978, 2503, 2955, 3031
CviAII CATG 8 cut(s) 11, 779, 881, 1067, 1390, 1433, 1687, 1705
CviQI GTAC 4 cut(s) 1978, 2503, 2955, 3031
DpnI GATC 4 cut(s) 43, 841, 885, 1617
DpnII GATC 4 cut(s) 41, 839, 883, 1615
DraI TTTAAA 3 cut(s) 807, 1798, 2070
Eam1104I CTCTTC 5 cut(s) 969, 2109, 2218, 2352, 2365
EarI CTCTTC 5 cut(s) 969, 2109, 2218, 2352, 2365
EciI GGCGGA 1 cut(s) 1859
Eco31I GGTCTC 1 cut(s) 870
Eco47I GGWCC 2 cut(s) 1300, 2521
Eco88I CYCGRG 2 cut(s) 642, 710
Eco91I GGTNACC 1 cut(s) 2012
EcoO109I RGGNCCY 2 cut(s) 1300, 2521
EcoO65I GGTNACC 1 cut(s) 2012
EcoRII CCWGG 8 cut(s) 14, 171, 238, 1181, 1224, 2333, 2944, 2989
EcoT22I ATGCAT 2 cut(s) 142, 2250
Esp3I CGTCTC 1 cut(s) 1782
FaeI CATG 8 cut(s) 14, 782, 884, 1070, 1393, 1436, 1690, 1708
FalI AAGNNNNNCTT 6 cut(s) 966, 998, 1313, 1345, 1596, 1628
FatI CATG 8 cut(s) 10, 778, 880, 1066, 1389, 1432, 1686, 1704
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 1 cut(s) 2608
FbaI TGATCA 1 cut(s) 883
Fnu4HI GCNGC 5 cut(s) 675, 1222, 1904, 2431, 2858
FokI GGATG 9 cut(s) 46, 98, 106, 495, 659, 749, 1037, 1799, 2150
Fsp4HI GCNGC 5 cut(s) 675, 1222, 1904, 2431, 2858
FspBI CTAG 6 cut(s) 35, 563, 2220, 2324, 2763, 2985
GluI GCNGC 5 cut(s) 675, 1222, 1904, 2431, 2858
HaeIII GGCC 6 cut(s) 176, 231, 861, 1224, 2103, 2342
HapII CCGG 1 cut(s) 1022
HgaI GACGC 3 cut(s) 212, 1679, 1986
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 8 cut(s) 14, 782, 884, 1070, 1393, 1436, 1690, 1708
HincII GTYRAC 2 cut(s) 568, 1768
HindII GTYRAC 2 cut(s) 568, 1768
HindIII AAGCTT 1 cut(s) 495
HpaI GTTAAC 2 cut(s) 568, 1768
HpaII CCGG 1 cut(s) 1022
HphI GGTGA 4 cut(s) 122, 346, 1339, 2024
Hpy166II GTNNAC 6 cut(s) 568, 707, 1598, 1681, 1768, 2293
Hpy188III TCNNGA 8 cut(s) 644, 749, 1383, 1441, 1757, 1885, 1964, 2285
Hpy8I GTNNAC 6 cut(s) 568, 707, 1598, 1681, 1768, 2293
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 6 cut(s) 317, 1208, 2332, 2644, 2784, 2992
HpyCH4III ACNGT 9 cut(s) 442, 757, 1150, 1343, 1763, 1970, 2311, 2350, 3030
HpyCH4IV ACGT 6 cut(s) 88, 1775, 1976, 2413, 2501, 3045
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 967, 1072, 1259, 2854
HpySE526I ACGT 6 cut(s) 88, 1775, 1976, 2413, 2501, 3045
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 8 cut(s) 14, 782, 884, 1070, 1393, 1436, 1690, 1708
Ksp22I TGATCA 1 cut(s) 883
KspAI GTTAAC 2 cut(s) 568, 1768
Kzo9I GATC 4 cut(s) 41, 839, 883, 1615
LguI GCTCTTC 1 cut(s) 2218
LmnI GCTCC 2 cut(s) 1046, 1701
Lsp1109I GCAGC 3 cut(s) 661, 2442, 2869
MaeI CTAG 6 cut(s) 35, 563, 2220, 2324, 2763, 2985
MaeII ACGT 6 cut(s) 88, 1775, 1976, 2413, 2501, 3045
MaeIII GTNAC 8 cut(s) 89, 224, 757, 1030, 1972, 2012, 2084, 2182
MalI GATC 4 cut(s) 43, 841, 885, 1617
MboI GATC 4 cut(s) 41, 839, 883, 1615
MfeI CAATTG 1 cut(s) 1815
MflI RGATCY 1 cut(s) 839
MhlI GDGCHC 1 cut(s) 709
MlyI GAGTC 2 cut(s) 1260, 1820
MmeI TCCRAC 3 cut(s) 225, 370, 1258
Mph1103I ATGCAT 2 cut(s) 142, 2250
MslI CAYNNNNRTG 2 cut(s) 135, 276
MspI CCGG 1 cut(s) 1022
MspR9I CCNGG 9 cut(s) 16, 173, 240, 1022, 1183, 1226, 2335, 2946, 2991
MunI CAATTG 1 cut(s) 1815
MvaI CCWGG 8 cut(s) 16, 173, 240, 1183, 1226, 2335, 2946, 2991
MvnI CGCG 1 cut(s) 1221
MwoI GCNNNNNNNGC 5 cut(s) 203, 967, 1072, 1259, 2854
NciI CCSGG 1 cut(s) 1022
NdeI CATATG 1 cut(s) 2608
NdeII GATC 4 cut(s) 41, 839, 883, 1615
NlaIII CATG 8 cut(s) 14, 782, 884, 1070, 1393, 1436, 1690, 1708
NlaIV GGNNCC 3 cut(s) 2522, 2710, 2797
NmuCI GTSAC 4 cut(s) 224, 1030, 1972, 2012
NsiI ATGCAT 2 cut(s) 142, 2250
NspI RCATGY 2 cut(s) 14, 1436
PaeI GCATGC 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 710
PasI CCCWGGG 1 cut(s) 1182
PciI ACATGT 1 cut(s) 1432
PciSI GCTCTTC 1 cut(s) 2218
PfeI GAWTC 8 cut(s) 127, 186, 256, 370, 542, 907, 1157, 2254
PflFI GACNNNGTC 1 cut(s) 1970
PflMI CCANNNNNTGG 2 cut(s) 1213, 1840
PfoI TCCNGGA 1 cut(s) 1020
PkrI GCNGC 5 cut(s) 676, 1223, 1905, 2432, 2859
PleI GAGTC 2 cut(s) 1260, 1819
PpsI GAGTC 2 cut(s) 1260, 1819
Ppu21I YACGTR 2 cut(s) 1977, 2414
PpuMI RGGWCCY 2 cut(s) 1300, 2521
PscI ACATGT 1 cut(s) 1432
PshBI ATTAAT 2 cut(s) 1724, 2915
PsiI TTATAA 1 cut(s) 765
Psp5II RGGWCCY 2 cut(s) 1300, 2521
Psp6I CCWGG 8 cut(s) 14, 171, 238, 1181, 1224, 2333, 2944, 2989
PspEI GGTNACC 1 cut(s) 2012
PspGI CCWGG 8 cut(s) 14, 171, 238, 1181, 1224, 2333, 2944, 2989
PspN4I GGNNCC 3 cut(s) 2522, 2710, 2797
PspPI GGNCC 3 cut(s) 860, 1300, 2521
PspPPI RGGWCCY 2 cut(s) 1300, 2521
PspXI VCTCGAGB 1 cut(s) 710
PstI CTGCAG 1 cut(s) 2006
PstNI CAGNNNCTG 1 cut(s) 2534
PsuI RGATCY 1 cut(s) 839
PsyI GACNNNGTC 1 cut(s) 1970
RsaI GTAC 4 cut(s) 1979, 2504, 2956, 3032
RsaNI GTAC 4 cut(s) 1978, 2503, 2955, 3031
RseI CAYNNNNRTG 2 cut(s) 135, 276
SapI GCTCTTC 1 cut(s) 2218
SatI GCNGC 5 cut(s) 675, 1222, 1904, 2431, 2858
Sau3AI GATC 4 cut(s) 41, 839, 883, 1615
Sau96I GGNCC 3 cut(s) 860, 1300, 2521
SchI GAGTC 2 cut(s) 1260, 1820
ScrFI CCNGG 9 cut(s) 16, 173, 240, 1022, 1183, 1226, 2335, 2946, 2991
SduI GDGCHC 1 cut(s) 709
SfcI CTRYAG 2 cut(s) 2002, 2346
Sfr274I CTCGAG 1 cut(s) 710
SinI GGWCC 2 cut(s) 1300, 2521
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 2 cut(s) 135, 276
SmlI CTYRAG 3 cut(s) 397, 710, 843
SmoI CTYRAG 3 cut(s) 397, 710, 843
SpeI ACTAGT 1 cut(s) 562
SphI GCATGC 1 cut(s) 14
SsiI CCGC 4 cut(s) 358, 1221, 1844, 1903
SspI AATATT 3 cut(s) 1447, 2494, 2509
SspMI CTAG 6 cut(s) 35, 563, 2220, 2324, 2763, 2985
StyD4I CCNGG 9 cut(s) 14, 171, 238, 1020, 1181, 1224, 2333, 2944, 2989
TaaI ACNGT 9 cut(s) 442, 757, 1150, 1343, 1763, 1970, 2311, 2350, 3030
TaiI ACGT 6 cut(s) 91, 1778, 1979, 2416, 2504, 3048
TaqI TCGA 2 cut(s) 40, 711
TatI WGTACW 1 cut(s) 3030
TauI GCSGC 2 cut(s) 1224, 1906
TfiI GAWTC 8 cut(s) 127, 186, 256, 370, 542, 907, 1157, 2254
TscAI CASTG 4 cut(s) 414, 1255, 1294, 1402
TseFI GTSAC 4 cut(s) 224, 1030, 1972, 2012
TseI GCWGC 3 cut(s) 674, 2430, 2857
Tsp45I GTSAC 4 cut(s) 224, 1030, 1972, 2012
TspRI CASTG 4 cut(s) 414, 1255, 1294, 1402
Tth111I GACNNNGTC 1 cut(s) 1970
Van91I CCANNNNNTGG 2 cut(s) 1213, 1840
VneI GTGCAC 1 cut(s) 705
VpaK11BI GGWCC 2 cut(s) 1300, 2521
VspI ATTAAT 2 cut(s) 1724, 2915
XapI RAATTY 1 cut(s) 2071
XceI RCATGY 2 cut(s) 14, 1436
XhoI CTCGAG 1 cut(s) 710
XspI CTAG 6 cut(s) 35, 563, 2220, 2324, 2763, 2985
Zsp2I ATGCAT 2 cut(s) 142, 2250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.