RchiOBHm_Chr1g0384651

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006142
Physical Location & Seq
Reverse (-)
68417582 .. 68422461
4880 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60748

Sequence Viewer

Length: 3075 bp
ATGAATATGATGCGCCAGCTTTTGAAGAAGCAAGCCAAGACTAGTCCACTTTTCCTGGCTCGATCTTTGAGTTCCTCCTCGTCCCACTCATTTGGCAAGCCATTCTTTGCTCCCCAAAACTACTACTACTCCATCCCACCATCCAAGACTCACCTCTATTCATCCTTCTTTTGCACCCTTATACACCTCTACTTGGCCTGCGGCAGATTCCCCGATGCTTCCCACGCCTTCTTCTCTATGCGAAGTCATGGCCTCGTTCCTGTTCTGCCTCTTTGGAATCGGCTTCTTCACCATTTCAGTGCCTCTGGTTTGTCTTCTCAGGTATCCCTTCTCTACTCTGAGATGCTCTCCTGTGGGGTTGTGCCTAGTCTTTTCACCCGCAACATATTGATTCACTCTTTCTGCAAAGTCGGAAACTTGAGTCTGGCACTGCATTTCTTAAGAAATAATACTCAAATTGATACTGTTTCCTATAACACTCTCATTTGGGGCTTCTCCCAACAAGGAATGCCTTATCAAGCTTTTGGATTTTTGTCTCAAATGCTGCGGAGGGCTATATTCATAGATTCTTATACTTGCAATTTACTAGTTAACGGGTTTTGCCGAATTGGCCTAGTAGACTATGCAGAATGGGTTATGGACAATTTGGTCAGTGGTGGAATTACTCAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGATATTGCAAAGCTGGACAAGTTAGCCGTGCACTCGAGTTAATTGAGAGAATGGAGAGGGATGGTCTTCTTCCTGATACTGTTACTTATAATACTCTTGTTCATGGGTTTTGTCACGTGGGGGATTTTGTAAATGCCAAGAGTACAATACATAACATTTTGACATCTCAAGGAAACGAAGACGGCCCTCATAATGAGAGAGACCGTGATCAGAACTGGACTGGCAGTATGAATTTTAGACCAAATGTTATAACTCTCACCACTCTCATTAGCGCTTACAGTAAGCATCAAGGACTTGAAGAGGCTCTTTCTCTGTATGAGGAAATGGTTATGAATGGCATTTTCCCGGATGTTGTTACTTATAGCTCCATTATATATGGTCTTTGCAAGCATGGGAGGCTGTCAGAAGCCAAAGTGCTCTTAAGGGAGATAGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTTCACTACCCTCGTGGATTCTTTGTTTAAGGCAGGCTCTTCTAGGGAAGCTCTCATCCTTCAAGGCCAAATGGTGGTTCGCGGCCTAGTTTTTGATTTAGTAATTTGCACTGCTTTGATGGCTGGACTGTTTAAAGTTGGTAAAGTCGGCGAGGCTAAGGACCTGTTTCGAACAATTTCAAATCTCAGCTTAGTTCCAAACTGTATCACCTATTCTGCTTTGATAAATGGGCATTGCAATTCAGGAGACATGGGCGGTGCAGAAGCAATACTTAGAGAAATGGAAGATAAACATGTTTTCCCCAATATTATCACTTATTCTTCTCTCATAAAGGGTTATATGAAGAAAGGAATGATTGGTGATGCTATTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTATTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTTAAGGCAGGTAAACAGGAATTTGCCCTTGATCTCTACAATGAAATGAAAATTAGAGGATTGGAGGACAACAGTTTCATATTTGATGCTTTTGTGAACAACATGAAAAAGTGCAGACGGATGGAACAAGCTGAGGGATTAATTATGGATATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACATCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTCAACTTGTTCCAAGAAATGGTGGAGAAAAATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTCAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGGCTCCCGACTGTGTCACGTACAATACCCTGATTATTGCATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTGAACTTTGGAATGAGATGAAGGGTCAAGGGTTCATTTTAAATTCATTCACTTGTAACATTCTGATAGGAGGGCTTTGTGAAGAAGATAAGATTGAAAAAGCAATGGATGTCTTAAATGAAATGGTGGCTGTGGGTTCTCTCCCTACCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGTAGATCCAATTTTGCAAATGCATCAGAAGCTTGTAAGTATGGGGCTTGACCTCGATCATGATGTTTATAATAATCTCATCACTATCTTATGTAGGCTGGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGACTGGAAGAGGATTTTTAGCTGATACCATTACTTACAATGCCCTTATACGTGGATATGGTATGAGCAGCCATCTAAAAAGGGCTTTTGCTACACACTCAAAGATGCTGGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGTTTGATGACAAAGGCAGATGAATTATTTAGTGAAATGAAGAACATAGGCTTTCTTCCTAATGCTTCCACATATGATATATTGGTTTCCGGCTATGGTAAGATTGGAAATAAGAAGGAAGCCATAAGGCGTTATTGTGAAATGGTAAGCAAAAGTTTTGTTCCCAATACTAGCACCTACAATGTGCTTATTAGTGATTTTGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGGCAAGGGGTGCCTGTCCTAATTCTTCAACATACAGCATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTGCGAAAGTCATACCGAGCTGAGGCAAAGAGATTATTAGCCGAGATGAATGAGAAAGGGTATGTTCCAGGTGAAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGGCTGATGCTCAGAGGCTATTAAAGGAACTGTACATCAGCAAGAACATATGA

Protein Analysis

1024

Amino Acids

114.21

Weight (kDa)

8.53

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 92 - 136 1.7e-06 PPR repeat family
PPR_2 PF13041 154 - 202 2.7e-12 PPR repeat family
PPR_3 PF13812 212 - 267 3.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 220 - 252 1.9e-09 PPR repeat
PPR_2 PF13041 224 - 272 2.1e-17 PPR repeat family
PPR PF01535 228 - 256 7.6e-08 PPR repeat
PPR_1 PF12854 254 - 279 3.8e-07 PPR repeat
PPR_3 PF13812 311 - 358 6.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 314 - 363 6.2e-16 PPR repeat family
PPR PF01535 317 - 347 4.4e-06 PPR repeat
PPR_1 PF12854 345 - 377 5.1e-12 PPR repeat
PPR_2 PF13041 349 - 398 8e-13 PPR repeat family
PPR PF01535 352 - 382 1.9e-06 PPR repeat
PPR_2 PF13041 420 - 468 6.6e-10 PPR repeat family
PPR_long PF17177 439 - 542 4.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 443 - 501 1.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 452 - 483 3.2e-09 PPR repeat
PPR_2 PF13041 454 - 501 8.6e-13 PPR repeat family
PPR_1 PF12854 486 - 518 6.7e-08 PPR repeat
PPR_2 PF13041 489 - 538 4.3e-14 PPR repeat family
PPR PF01535 492 - 522 2.1e-06 PPR repeat
PPR_2 PF13041 524 - 561 4.3e-07 PPR repeat family
PPR_3 PF13812 584 - 639 9.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 595 - 642 1.2e-10 PPR repeat family
PPR_long PF17177 613 - 747 2.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 618 - 675 4.1e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 630 - 677 1.6e-10 PPR repeat family
PPR_1 PF12854 660 - 692 7.8e-13 PPR repeat
PPR_2 PF13041 663 - 711 9.7e-17 PPR repeat family
PPR PF01535 666 - 696 4.7e-09 PPR repeat
PPR_1 PF12854 695 - 727 5.9e-06 PPR repeat
PPR_2 PF13041 699 - 744 1.9e-10 PPR repeat family
PPR_2 PF13041 772 - 815 2.5e-09 PPR repeat family
PPR_3 PF13812 792 - 850 1.3e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 804 - 850 4.5e-11 PPR repeat family
PPR_long PF17177 817 - 951 3.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 838 - 886 8.6e-12 PPR repeat family
PPR_2 PF13041 880 - 922 6.1e-08 PPR repeat family
PPR_1 PF12854 905 - 937 5.1e-06 PPR repeat
PPR_2 PF13041 908 - 957 4.1e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 789, 950, 2319
AasI GACNNNNNNGTC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 1607
AccB1I GGYRCC 1 cut(s) 2819
AccB7I CCANNNNNTGG 2 cut(s) 1237, 1864
AccI GTMKAC 1 cut(s) 618
AccII CGCG 1 cut(s) 1245
AciI CCGC 6 cut(s) 201, 379, 547, 1245, 1419, 1927
AclWI GGATC 1 cut(s) 2249
AcsI RAATTY 3 cut(s) 931, 1628, 2095
AcvI CACGTG 1 cut(s) 817
AfaI GTAC 5 cut(s) 844, 2003, 2528, 2980, 3056
AfeI AGCGCT 1 cut(s) 973
AfiI CCNNNNNNNGG 5 cut(s) 193, 1237, 1864, 2788, 2923
AflII CTTAAG 2 cut(s) 439, 1120
AflIII ACRYGT 1 cut(s) 1456
AgsI TTSAA 9 cut(s) 25, 998, 1226, 1344, 2057, 2150, 2238, 2522, 2838
AhlI ACTAGT 2 cut(s) 41, 586
AjnI CCWGG 4 cut(s) 54, 2357, 2968, 3013
AjuI GAANNNNNNNTTGG 2 cut(s) 1224, 1256
Alw21I GWGCWC 2 cut(s) 733, 1119
Alw26I GTCTC 4 cut(s) 540, 894, 1165, 1404
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 1 cut(s) 2249
AlwNI CAGNNNCTG 1 cut(s) 2558
Ama87I CYCGRG 1 cut(s) 734
Aor51HI AGCGCT 1 cut(s) 973
AoxI GGCC 7 cut(s) 195, 250, 610, 883, 1228, 1246, 2364
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 3 cut(s) 544, 2454, 2881
ApoI RAATTY 3 cut(s) 931, 1628, 2095
AseI ATTAAT 1 cut(s) 1748
Asp700I GAANNNNTTC 1 cut(s) 1339
AspLEI GCGC 2 cut(s) 15, 974
AspS9I GGNCC 3 cut(s) 884, 1324, 2545
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 8 cut(s) 143, 281, 367, 949, 1363, 1535, 2048, 2984
AsuII TTCGAA 1 cut(s) 1333
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 2 cut(s) 1324, 2545
BaeGI GKGCMC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 2819
BauI CACGAG 1 cut(s) 1175
BbrPI CACGTG 1 cut(s) 817
BbsI GAAGAC 3 cut(s) 306, 758, 885
Bbv12I GWGCWC 2 cut(s) 733, 1119
BbvCI CCTCAGC 3 cut(s) 1740, 2499, 2922
BbvI GCAGC 3 cut(s) 531, 2466, 2893
BceAI ACGGC 2 cut(s) 711, 898
BciT130I CCWGG 4 cut(s) 56, 2359, 2970, 3015
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 4 cut(s) 540, 894, 1165, 1404
BcuI ACTAGT 2 cut(s) 41, 586
BfaI CTAG 9 cut(s) 42, 366, 587, 614, 1206, 1250, 2730, 2787, 3009
BfmI CTRYAG 2 cut(s) 2026, 2370
BfoI RGCGCY 1 cut(s) 975
BfrI CTTAAG 2 cut(s) 439, 1120
BfuAI ACCTGC 1 cut(s) 1607
BfuI GTATCC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 609
BisI GCNGC 6 cut(s) 202, 545, 1246, 1928, 2455, 2882
BlsI GCNGC 6 cut(s) 203, 546, 1247, 1929, 2456, 2883
Bme1390I CCNGG 5 cut(s) 56, 1046, 2359, 2970, 3015
Bme18I GGWCC 2 cut(s) 1324, 2545
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 3 cut(s) 884, 1324, 2545
BmiI GGNNCC 3 cut(s) 1986, 2546, 2821
BmrFI CCNGG 5 cut(s) 56, 1046, 2359, 2970, 3015
BpiI GAAGAC 3 cut(s) 306, 758, 885
BplI GAGNNNNNCTC 2 cut(s) 332, 364
Bpu10I CCTNAGC 5 cut(s) 1320, 1740, 2499, 2763, 2922
Bpu14I TTCGAA 1 cut(s) 1333
BpuEI CTTGAG 2 cut(s) 439, 852
BpuMI CCSGG 1 cut(s) 1046
BsaAI YACGTR 3 cut(s) 817, 2001, 2438
BsaI GGTCTC 1 cut(s) 894
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 2885, 2915
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 1237, 1864, 2788, 2923
Bse1I ACTGG 4 cut(s) 920, 925, 1966, 2395
Bse3DI GCAATG 2 cut(s) 1396, 2163
BseBI CCWGG 4 cut(s) 56, 2359, 2970, 3015
BseLI CCNNNNNNNGG 5 cut(s) 193, 1237, 1864, 2788, 2923
BseMI GCAATG 2 cut(s) 1396, 2163
BseNI ACTGG 4 cut(s) 920, 925, 1966, 2395
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 3 cut(s) 531, 2466, 2893
BseYI CCCAGC 1 cut(s) 2347
BsgI GTGCAG 2 cut(s) 1443, 1741
Bsh1236I CGCG 1 cut(s) 1245
BshFI GGCC 7 cut(s) 197, 252, 612, 885, 1230, 1248, 2366
BshNI GGYRCC 1 cut(s) 2819
BsiHKAI GWGCWC 2 cut(s) 733, 1119
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 2 cut(s) 1046, 2649
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 5 cut(s) 193, 1237, 1864, 2788, 2923
BsmAI GTCTC 4 cut(s) 540, 894, 1165, 1404
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 2 cut(s) 513, 2021
BsnI GGCC 7 cut(s) 197, 252, 612, 885, 1230, 1248, 2366
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 1333
Bsp1286I GDGCHC 2 cut(s) 733, 1119
Bsp1407I TGTACA 1 cut(s) 3054
Bsp143I GATC 5 cut(s) 62, 907, 1639, 2254, 2305
BspACI CCGC 6 cut(s) 201, 379, 547, 1245, 1419, 1927
BspANI GGCC 7 cut(s) 197, 252, 612, 885, 1230, 1248, 2366
BspFNI CGCG 1 cut(s) 1245
BspHI TCATGA 1 cut(s) 2308
BspLI GGNNCC 3 cut(s) 1986, 2546, 2821
BspMAI CTGCAG 1 cut(s) 2030
BspMI ACCTGC 1 cut(s) 1607
BspPI GGATC 1 cut(s) 2249
BspQI GCTCTTC 1 cut(s) 1207
BspT104I TTCGAA 1 cut(s) 1333
BspT107I GGYRCC 1 cut(s) 2819
BspTI CTTAAG 2 cut(s) 439, 1120
BspTNI GGTCTC 1 cut(s) 894
BsrDI GCAATG 2 cut(s) 1396, 2163
BsrGI TGTACA 1 cut(s) 3054
BsrI ACTGG 4 cut(s) 920, 925, 1966, 2395
BssMI GATC 5 cut(s) 62, 907, 1639, 2254, 2305
BssSI CACGAG 1 cut(s) 1175
Bst2BI CACGAG 1 cut(s) 1175
Bst2UI CCWGG 4 cut(s) 56, 2359, 2970, 3015
Bst6I CTCTTC 5 cut(s) 993, 1207, 2242, 2376, 2389
BstAFI CTTAAG 2 cut(s) 439, 1120
BstAPI GCANNNNNTGC 1 cut(s) 2819
BstAUI TGTACA 1 cut(s) 3054
BstBAI YACGTR 3 cut(s) 817, 2001, 2438
BstBI TTCGAA 1 cut(s) 1333
BstC8I GCNNGC 8 cut(s) 17, 33, 98, 199, 1088, 1198, 2496, 2811
BstFNI CGCG 1 cut(s) 1245
BstH2I RGCGCY 1 cut(s) 975
BstHHI GCGC 2 cut(s) 15, 974
BstKTI GATC 5 cut(s) 65, 910, 1642, 2257, 2308
BstMAI GTCTC 4 cut(s) 540, 894, 1165, 1404
BstMBI GATC 5 cut(s) 62, 907, 1639, 2254, 2305
BstMWI GCNNNNNNNGC 7 cut(s) 224, 609, 1096, 1283, 2278, 2819, 2878
BstNI CCWGG 4 cut(s) 56, 2359, 2970, 3015
BstNSI RCATGY 1 cut(s) 1460
BstSCI CCNGG 5 cut(s) 54, 1044, 2357, 2968, 3013
BstSFI CTRYAG 2 cut(s) 2026, 2370
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 1 cut(s) 1245
BstV1I GCAGC 3 cut(s) 531, 2466, 2893
BstV2I GAAGAC 3 cut(s) 306, 758, 885
BstX2I RGATCY 1 cut(s) 2254
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 2254
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 7 cut(s) 197, 252, 612, 885, 1230, 1248, 2366
BtsI GCAGTG 2 cut(s) 428, 1272
BtsIMutI CAGTG 5 cut(s) 304, 428, 658, 1272, 2040
BveI ACCTGC 1 cut(s) 1607
Cac8I GCNNGC 8 cut(s) 17, 33, 98, 199, 1088, 1198, 2496, 2811
CaiI CAGNNNCTG 1 cut(s) 2558
CciI TCATGA 1 cut(s) 2308
CfoI GCGC 2 cut(s) 15, 974
Cfr13I GGNCC 3 cut(s) 884, 1324, 2545
Csp6I GTAC 5 cut(s) 843, 2002, 2527, 2979, 3055
CviAII CATG 7 cut(s) 248, 803, 1091, 1414, 1457, 1711, 2309
CviQI GTAC 5 cut(s) 843, 2002, 2527, 2979, 3055
DpnI GATC 5 cut(s) 64, 909, 1641, 2256, 2307
DpnII GATC 5 cut(s) 62, 907, 1639, 2254, 2305
DraI TTTAAA 3 cut(s) 1297, 1822, 2094
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 5 cut(s) 993, 1207, 2242, 2376, 2389
EarI CTCTTC 5 cut(s) 993, 1207, 2242, 2376, 2389
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 1324, 2545
Eco47III AGCGCT 1 cut(s) 973
Eco72I CACGTG 1 cut(s) 817
Eco88I CYCGRG 1 cut(s) 734
EcoO109I RGGNCCY 2 cut(s) 1324, 2545
EcoRII CCWGG 4 cut(s) 54, 2357, 2968, 3013
EcoT22I ATGCAT 1 cut(s) 2274
FaeI CATG 7 cut(s) 251, 806, 1094, 1417, 1460, 1714, 2312
FalI AAGNNNNNCTT 6 cut(s) 89, 121, 990, 1022, 1419, 1451
FaqI GGGAC 1 cut(s) 67
FatI CATG 7 cut(s) 247, 802, 1090, 1413, 1456, 1710, 2308
FauI CCCGC 1 cut(s) 386
FauNDI CATATG 2 cut(s) 2632, 3071
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 6 cut(s) 202, 545, 1246, 1928, 2455, 2882
Fsp4HI GCNGC 6 cut(s) 202, 545, 1246, 1928, 2455, 2882
FspBI CTAG 9 cut(s) 42, 366, 587, 614, 1206, 1250, 2730, 2787, 3009
GlaI GCGC 2 cut(s) 14, 973
GluI GCNGC 6 cut(s) 202, 545, 1246, 1928, 2455, 2882
GsaI CCCAGC 1 cut(s) 2351
HaeII RGCGCY 1 cut(s) 975
HaeIII GGCC 7 cut(s) 197, 252, 612, 885, 1230, 1248, 2366
HapII CCGG 2 cut(s) 1046, 2649
HhaI GCGC 2 cut(s) 15, 974
Hin1II CATG 7 cut(s) 251, 806, 1094, 1417, 1460, 1714, 2312
Hin6I GCGC 2 cut(s) 13, 972
HinP1I GCGC 2 cut(s) 13, 972
HincII GTYRAC 2 cut(s) 592, 1792
HindII GTYRAC 2 cut(s) 592, 1792
HindIII AAGCTT 2 cut(s) 519, 2279
HinfI GANTC 8 cut(s) 148, 207, 277, 391, 421, 566, 1181, 1835
HpaI GTTAAC 2 cut(s) 592, 1792
HpaII CCGG 2 cut(s) 1046, 2649
HphI GGTGA 8 cut(s) 143, 281, 367, 949, 1363, 1535, 2048, 2984
Hpy166II GTNNAC 7 cut(s) 47, 592, 619, 731, 1622, 1705, 1792
Hpy188I TCNGA 9 cut(s) 340, 413, 912, 1105, 1768, 1806, 2118, 2277, 3036
Hpy188III TCNNGA 7 cut(s) 668, 773, 1407, 1781, 1909, 1988, 2309
Hpy8I GTNNAC 7 cut(s) 47, 592, 619, 731, 1622, 1705, 1792
HpyAV CCTTC 9 cut(s) 175, 238, 338, 1174, 1232, 2068, 2356, 2668, 3016
HpyCH4IV ACGT 4 cut(s) 816, 2000, 2437, 2525
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 609, 1096, 1283, 2278, 2819, 2878
HpySE526I ACGT 4 cut(s) 816, 2000, 2437, 2525
Hsp92II CATG 7 cut(s) 251, 806, 1094, 1417, 1460, 1714, 2312
HspAI GCGC 2 cut(s) 13, 972
Ksp22I TGATCA 1 cut(s) 907
KspAI GTTAAC 2 cut(s) 592, 1792
Kzo9I GATC 5 cut(s) 62, 907, 1639, 2254, 2305
LguI GCTCTTC 1 cut(s) 1207
LmnI GCTCC 4 cut(s) 115, 1070, 1990, 2791
Lsp1109I GCAGC 3 cut(s) 531, 2466, 2893
MaeI CTAG 9 cut(s) 42, 366, 587, 614, 1206, 1250, 2730, 2787, 3009
MaeII ACGT 4 cut(s) 816, 2000, 2437, 2525
MaeIII GTNAC 7 cut(s) 781, 812, 1054, 1996, 2036, 2108, 2206
MalI GATC 5 cut(s) 64, 909, 1641, 2256, 2307
MboI GATC 5 cut(s) 62, 907, 1639, 2254, 2305
MfeI CAATTG 1 cut(s) 1839
MflI RGATCY 1 cut(s) 2254
MhlI GDGCHC 2 cut(s) 733, 1119
MlyI GAGTC 3 cut(s) 142, 430, 1844
MmeI TCCRAC 1 cut(s) 391
Mph1103I ATGCAT 1 cut(s) 2274
MroXI GAANNNNTTC 1 cut(s) 1339
MslI CAYNNNNRTG 1 cut(s) 297
MspCI CTTAAG 2 cut(s) 439, 1120
MspI CCGG 2 cut(s) 1046, 2649
MspR9I CCNGG 5 cut(s) 56, 1046, 2359, 2970, 3015
MunI CAATTG 1 cut(s) 1839
Mva1269I GAATGC 2 cut(s) 513, 2021
MvaI CCWGG 4 cut(s) 56, 2359, 2970, 3015
MvnI CGCG 1 cut(s) 1245
MwoI GCNNNNNNNGC 7 cut(s) 224, 609, 1096, 1283, 2278, 2819, 2878
NciI CCSGG 1 cut(s) 1046
NdeI CATATG 2 cut(s) 2632, 3071
NdeII GATC 5 cut(s) 62, 907, 1639, 2254, 2305
NlaIII CATG 7 cut(s) 251, 806, 1094, 1417, 1460, 1714, 2312
NlaIV GGNNCC 3 cut(s) 1986, 2546, 2821
NmeAIII GCCGAG 1 cut(s) 2968
NmuCI GTSAC 3 cut(s) 812, 1996, 2036
NsiI ATGCAT 1 cut(s) 2274
NspI RCATGY 1 cut(s) 1460
NspV TTCGAA 1 cut(s) 1333
PaeR7I CTCGAG 1 cut(s) 734
PagI TCATGA 1 cut(s) 2308
PciI ACATGT 1 cut(s) 1456
PciSI GCTCTTC 1 cut(s) 1207
PctI GAATGC 2 cut(s) 513, 2021
PdmI GAANNNNTTC 1 cut(s) 1339
PfeI GAWTC 5 cut(s) 207, 277, 391, 566, 1181
PflFI GACNNNGTC 1 cut(s) 1994
PflMI CCANNNNNTGG 2 cut(s) 1237, 1864
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 6 cut(s) 203, 546, 1247, 1929, 2456, 2883
PleI GAGTC 3 cut(s) 142, 429, 1843
PmaCI CACGTG 1 cut(s) 817
PmlI CACGTG 1 cut(s) 817
PpsI GAGTC 3 cut(s) 142, 429, 1843
Ppu21I YACGTR 3 cut(s) 817, 2001, 2438
PpuMI RGGWCCY 2 cut(s) 1324, 2545
PscI ACATGT 1 cut(s) 1456
PshBI ATTAAT 1 cut(s) 1748
PsiI TTATAA 3 cut(s) 789, 950, 2319
Psp5II RGGWCCY 2 cut(s) 1324, 2545
Psp6I CCWGG 4 cut(s) 54, 2357, 2968, 3013
PspCI CACGTG 1 cut(s) 817
PspFI CCCAGC 1 cut(s) 2347
PspGI CCWGG 4 cut(s) 54, 2357, 2968, 3013
PspN4I GGNNCC 3 cut(s) 1986, 2546, 2821
PspPI GGNCC 3 cut(s) 884, 1324, 2545
PspPPI RGGWCCY 2 cut(s) 1324, 2545
PspXI VCTCGAGB 1 cut(s) 734
PstI CTGCAG 1 cut(s) 2030
PstNI CAGNNNCTG 1 cut(s) 2558
PsuI RGATCY 1 cut(s) 2254
PsyI GACNNNGTC 1 cut(s) 1994
RsaI GTAC 5 cut(s) 844, 2003, 2528, 2980, 3056
RsaNI GTAC 5 cut(s) 843, 2002, 2527, 2979, 3055
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 1207
SatI GCNGC 6 cut(s) 202, 545, 1246, 1928, 2455, 2882
Sau3AI GATC 5 cut(s) 62, 907, 1639, 2254, 2305
Sau96I GGNCC 3 cut(s) 884, 1324, 2545
SchI GAGTC 3 cut(s) 142, 430, 1844
ScrFI CCNGG 5 cut(s) 56, 1046, 2359, 2970, 3015
SduI GDGCHC 2 cut(s) 733, 1119
SfcI CTRYAG 2 cut(s) 2026, 2370
Sfr274I CTCGAG 1 cut(s) 734
SfuI TTCGAA 1 cut(s) 1333
SinI GGWCC 2 cut(s) 1324, 2545
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 5 cut(s) 418, 439, 734, 867, 1120
SmoI CTYRAG 5 cut(s) 418, 439, 734, 867, 1120
SpeI ACTAGT 2 cut(s) 41, 586
SsiI CCGC 6 cut(s) 201, 379, 547, 1245, 1419, 1927
SspI AATATT 3 cut(s) 1471, 2518, 2533
SspMI CTAG 9 cut(s) 42, 366, 587, 614, 1206, 1250, 2730, 2787, 3009
StyD4I CCNGG 5 cut(s) 54, 1044, 2357, 2968, 3013
TaiI ACGT 4 cut(s) 819, 2003, 2440, 2528
TaqI TCGA 4 cut(s) 61, 735, 1333, 2304
TatI WGTACW 2 cut(s) 842, 3054
TauI GCSGC 3 cut(s) 204, 1248, 1930
TfiI GAWTC 5 cut(s) 207, 277, 391, 566, 1181
TscAI CASTG 5 cut(s) 304, 435, 658, 1279, 2047
TseFI GTSAC 3 cut(s) 812, 1996, 2036
TseI GCWGC 3 cut(s) 544, 2454, 2881
Tsp45I GTSAC 3 cut(s) 812, 1996, 2036
TspGWI ACGGA 1 cut(s) 1741
TspRI CASTG 5 cut(s) 304, 435, 658, 1279, 2047
Tth111I GACNNNGTC 1 cut(s) 1994
Van91I CCANNNNNTGG 2 cut(s) 1237, 1864
Vha464I CTTAAG 2 cut(s) 439, 1120
VneI GTGCAC 1 cut(s) 729
VpaK11BI GGWCC 2 cut(s) 1324, 2545
VspI ATTAAT 1 cut(s) 1748
XapI RAATTY 3 cut(s) 931, 1628, 2095
XceI RCATGY 1 cut(s) 1460
XhoI CTCGAG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 1 cut(s) 1339
XspI CTAG 9 cut(s) 42, 366, 587, 614, 1206, 1250, 2730, 2787, 3009
Zsp2I ATGCAT 1 cut(s) 2274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.