Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Reverse (-)

70462 .. 73681

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCCAAGTGCTTAGTGGTGCCCCATTCCTATTGCTGCTACAGGAGGAACTCTAGCAGCACCAGGATCAGGAAGGCACCTCCGCAACAACGTCAGCTCAATTCCTTGGCCGCCGGCACTCTCTTCAACGTCACCACCTCCTCAAACTCTTACACTCCCCTCAATTTGCAGCGCAGCCGAATTCTCAGCGCTCTCGAGTCCGATGTCCCTCACCCTCTTCACCAGGGATCGGCGAATTTGAAGAGTAGTGAGAGTTTCGAGCATTGGGATTCATGGACAGCAAAGTTCTCTGGCGCATCCAATATTCCATTTCTGCTGCTGCAAATGCCTCAGATCATCCTGAATGCTCAAAATCTTATGGCTGGAAATAAAGCTGCTCTTTTGGCAGTCCCTTGGCTGGGAATGTTTACTGGTTTGATTGGAAACCTTTCGCTGCTTTCATATTTTGCAAAGAAGAGGGAGAAAGAGGCGATTGTGGTGCAAACATTGGGTGTAGTTTCCTTGTATACTGTATTTGCACAGCTCTCCTTGGCAGAAGCAATGCCACTACCATACTTTGTGATTACCTCCATCGTCGTGGCAACCGGTCTTATTTTGAATTTTTTGAATTACTTTAATTTCCTCAATCCTGGAGTCTGGCTCTTCTGGGAAGATTTTATTACTGTTGGTGGGCTGTCAGTTCTTCCCCAAATTATGTGGTCTACATTTGTTCCATATATACCCAGCAGTATCGTGCCTGGAGCATTGGCTTTTGTTTTAGCTGTGGCAGCTGTAATTATGGCTCGAATGGGGAAACTCTCTTCAGAAGGAACCAAATTTGTTAGATCAATATCTGGATGGACAGCTACACTCCTCTTCATGTGGATGCCTGTTTCCCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGCTTATCAGCTGTCTCAATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCTCGTGCTCTTTTTATTCGTGATTTTATGTGGTTCACAGGTTCTTCATGGGCCTCTTTCTTTTATGGATATGGGAACATTGTGGCCTTATATTGGTTTAACAGTATCAGCAAGGAATTCTTCTTAGCAGCGACAGCTGGTTTGTTTTTATGGATAGGAATGGCTCTTTGGAGAGATGCTGTGGTGTATGGTCACAGCTCCCCTCTCACATCTTTAAAAGAGCTGGTTTCTGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

44.48

Weight (kDa)

9.56

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 76
AccI	GTMKAC	2 cut(s)	506, 701
AciI	CCGC	2 cut(s)	83, 111
AclWI	GGATC	4 cut(s)	74, 235, 961, 1197
AcoI	YGGCCR	2 cut(s)	3, 108
AcsI	RAATTY	6 cut(s)	180, 235, 598, 815, 889, 1085
AcuI	CTGAAG	1 cut(s)	786
AfeI	AGCGCT	1 cut(s)	190
AfiI	CCNNNNNNNGG	6 cut(s)	69, 229, 397, 398, 882, 1062
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	127, 241, 598, 607
AjnI	CCWGG	4 cut(s)	62, 222, 628, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	1120, 1152
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	1 cut(s)	934
AlwI	GGATC	4 cut(s)	74, 235, 961, 1197
Ama87I	CYCGRG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	190
AoxI	GGCC	4 cut(s)	3, 108, 1020, 1053
ApoI	RAATTY	6 cut(s)	180, 235, 598, 815, 889, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	1093, 1125
AsiGI	ACCGGT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	174, 191, 296
AspS9I	GGNCC	1 cut(s)	1020
AsuHPI	GGTGA	3 cut(s)	124, 203, 212
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1202
BanI	GGYRCC	2 cut(s)	19, 76
BauI	CACGAG	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	979
BccI	CCATC	2 cut(s)	578, 831
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	4 cut(s)	64, 224, 630, 738
BcoDI	GTCTC	1 cut(s)	934
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	192
Bme1390I	CCNGG	4 cut(s)	64, 224, 630, 738
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	1020
BmiI	GGNNCC	4 cut(s)	21, 78, 811, 1204
BmrFI	CCNGG	4 cut(s)	64, 224, 630, 738
BmsI	GCATC	3 cut(s)	305, 855, 1135
BplI	GAGNNNNNCTC	2 cut(s)	624, 656
BpmI	CTGGAG	2 cut(s)	651, 759
BsaBI	GATNNNNATC	1 cut(s)	829
BsaJI	CCNNGG	4 cut(s)	105, 223, 392, 528
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	6 cut(s)	69, 229, 397, 398, 882, 1062
Bse118I	RCCGGY	2 cut(s)	113, 584
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	2 cut(s)	546, 951
Bse8I	GATNNNNATC	1 cut(s)	829
BseBI	CCWGG	4 cut(s)	64, 224, 630, 738
BseDI	CCNNGG	4 cut(s)	105, 223, 392, 528
BseGI	GGATG	4 cut(s)	296, 336, 842, 870
BseJI	GATNNNNATC	1 cut(s)	829
BseLI	CCNNNNNNNGG	6 cut(s)	69, 229, 397, 398, 882, 1062
BseMI	GCAATG	2 cut(s)	546, 951
BseMII	CTCAG	2 cut(s)	199, 344
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	130, 842
BseSI	GKGCMC	1 cut(s)	24
BseYI	CCCAGC	2 cut(s)	397, 722
BshFI	GGCC	4 cut(s)	5, 110, 1022, 1055
BshNI	GGYRCC	2 cut(s)	19, 76
BshTI	ACCGGT	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	979
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	114, 585
BslFI	GGGAC	2 cut(s)	191, 374
BslI	CCNNNNNNNGG	6 cut(s)	69, 229, 397, 398, 882, 1062
BsmAI	GTCTC	1 cut(s)	934
BsmFI	GGGAC	2 cut(s)	191, 374
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	4 cut(s)	5, 110, 1022, 1055
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	24, 979
Bsp143I	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
BspACI	CCGC	2 cut(s)	83, 111
BspANI	GGCC	4 cut(s)	5, 110, 1022, 1055
BspCNI	CTCAG	2 cut(s)	198, 343
BspLI	GGNNCC	4 cut(s)	21, 78, 811, 1204
BspPI	GGATC	4 cut(s)	74, 235, 961, 1197
BspQI	GCTCTTC	1 cut(s)	647
BspT107I	GGYRCC	2 cut(s)	19, 76
BsrDI	GCAATG	2 cut(s)	546, 951
BsrFI	RCCGGY	2 cut(s)	113, 584
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	2 cut(s)	113, 584
BssECI	CCNNGG	4 cut(s)	105, 223, 392, 528
BssMI	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
BssNAI	GTATAC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	972
BssT1I	CCWWGG	3 cut(s)	105, 392, 528
Bst1107I	GTATAC	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	4 cut(s)	64, 224, 630, 738
Bst4CI	ACNGT	3 cut(s)	511, 664, 1073
Bst6I	CTCTTC	7 cut(s)	128, 222, 236, 449, 647, 805, 860
BstC8I	GCNNGC	2 cut(s)	115, 942
BstDEI	CTNAG	4 cut(s)	13, 185, 330, 1093
BstF5I	GGATG	4 cut(s)	296, 336, 842, 870
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	3 cut(s)	174, 191, 296
BstKTI	GATC	6 cut(s)	69, 230, 336, 827, 969, 1205
BstMAI	GTCTC	1 cut(s)	934
BstMBI	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 383, 767, 1103
BstNI	CCWGG	4 cut(s)	64, 224, 630, 738
BstSCI	CCNGG	4 cut(s)	62, 222, 628, 736
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	1202
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	1202
BstZ17I	GTATAC	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	5, 110, 1022, 1055
BtsCI	GGATG	4 cut(s)	296, 336, 842, 870
Cac8I	GCNNGC	2 cut(s)	115, 942
CfoI	GCGC	3 cut(s)	174, 191, 296
Cfr10I	RCCGGY	2 cut(s)	113, 584
Cfr13I	GGNCC	1 cut(s)	1020
CspAI	ACCGGT	1 cut(s)	584
CspCI	CAANNNNNGTGG	2 cut(s)	677, 712
CviAII	CATG	3 cut(s)	273, 859, 1017
DdeI	CTNAG	4 cut(s)	13, 185, 330, 1093
DpnI	GATC	6 cut(s)	68, 229, 335, 826, 968, 1204
DpnII	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
DraI	TTTAAA	1 cut(s)	1185
EaeI	YGGCCR	2 cut(s)	3, 108
Eam1104I	CTCTTC	7 cut(s)	128, 222, 236, 449, 647, 805, 860
EarI	CTCTTC	7 cut(s)	128, 222, 236, 449, 647, 805, 860
Eco130I	CCWWGG	3 cut(s)	105, 392, 528
Eco47III	AGCGCT	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	194
EcoRI	GAATTC	2 cut(s)	180, 1085
EcoRII	CCWGG	4 cut(s)	62, 222, 628, 736
EcoT14I	CCWWGG	3 cut(s)	105, 392, 528
ErhI	CCWWGG	3 cut(s)	105, 392, 528
FaeI	CATG	3 cut(s)	276, 862, 1020
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 1073, 1105
FaqI	GGGAC	2 cut(s)	191, 374
FatI	CATG	3 cut(s)	272, 858, 1016
FblI	GTMKAC	2 cut(s)	506, 701
FokI	GGATG	4 cut(s)	283, 323, 849, 877
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	3 cut(s)	173, 190, 295
GsaI	CCCAGC	2 cut(s)	401, 726
GsuI	CTGGAG	2 cut(s)	651, 759
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	5, 110, 1022, 1055
HapII	CCGG	2 cut(s)	114, 585
HhaI	GCGC	3 cut(s)	174, 191, 296
Hin1II	CATG	3 cut(s)	276, 862, 1020
Hin6I	GCGC	3 cut(s)	172, 189, 294
HinP1I	GCGC	3 cut(s)	172, 189, 294
HinfI	GANTC	3 cut(s)	197, 269, 633
HpaII	CCGG	2 cut(s)	114, 585
HphI	GGTGA	3 cut(s)	124, 203, 212
Hpy166II	GTNNAC	5 cut(s)	408, 507, 702, 885, 1005
Hpy188I	TCNGA	3 cut(s)	202, 333, 805
Hpy188III	TCNNGA	7 cut(s)	70, 194, 340, 834, 902, 989, 1200
Hpy8I	GTNNAC	5 cut(s)	408, 507, 702, 885, 1005
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	2 cut(s)	67, 800
HpyCH4III	ACNGT	3 cut(s)	511, 664, 1073
HpyCH4IV	ACGT	2 cut(s)	91, 129
HpyCH4V	TGCA	6 cut(s)	169, 322, 449, 481, 518, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 383, 767, 1103
HpyF3I	CTNAG	4 cut(s)	13, 185, 330, 1093
HpySE526I	ACGT	2 cut(s)	91, 129
Hsp92II	CATG	3 cut(s)	276, 862, 1020
HspAI	GCGC	3 cut(s)	172, 189, 294
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
LguI	GCTCTTC	1 cut(s)	647
LmnI	GCTCC	2 cut(s)	740, 1172
LweI	GCATC	3 cut(s)	305, 855, 1135
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	2 cut(s)	91, 129
MaeIII	GTNAC	2 cut(s)	130, 1160
MalI	GATC	6 cut(s)	68, 229, 335, 826, 968, 1204
MboI	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
MflI	RGATCY	1 cut(s)	1202
MhlI	GDGCHC	2 cut(s)	24, 979
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	206, 642
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	615, 1068, 1184
MslI	CAYNNNNRTG	2 cut(s)	575, 863
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	770, 926, 1106
MspI	CCGG	2 cut(s)	114, 585
MspR9I	CCNGG	4 cut(s)	64, 224, 630, 738
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	4 cut(s)	64, 224, 630, 738
MwoI	GCNNNNNNNGC	4 cut(s)	325, 383, 767, 1103
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	276, 862, 1020
NlaIV	GGNNCC	4 cut(s)	21, 78, 811, 1204
NmuCI	GTSAC	2 cut(s)	130, 1160
PaeR7I	CTCGAG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	647
PctI	GAATGC	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	628
PinAI	ACCGGT	1 cut(s)	584
PleI	GAGTC	2 cut(s)	205, 641
PpsI	GAGTC	2 cut(s)	205, 641
Psp6I	CCWGG	4 cut(s)	62, 222, 628, 736
PspFI	CCCAGC	2 cut(s)	397, 722
PspGI	CCWGG	4 cut(s)	62, 222, 628, 736
PspN4I	GGNNCC	4 cut(s)	21, 78, 811, 1204
PspPI	GGNCC	1 cut(s)	1020
PsuI	RGATCY	1 cut(s)	1202
PvuII	CAGCTG	3 cut(s)	770, 926, 1106
RseI	CAYNNNNRTG	2 cut(s)	575, 863
SapI	GCTCTTC	1 cut(s)	647
SaqAI	TTAA	3 cut(s)	615, 1068, 1184
Sau3AI	GATC	6 cut(s)	66, 227, 333, 824, 966, 1202
Sau96I	GGNCC	1 cut(s)	1020
SchI	GAGTC	2 cut(s)	206, 642
ScrFI	CCNGG	4 cut(s)	64, 224, 630, 738
SduI	GDGCHC	2 cut(s)	24, 979
SfaNI	GCATC	3 cut(s)	305, 855, 1135
SfcI	CTRYAG	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	575, 863
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	2 cut(s)	83, 111
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	62, 222, 628, 736
StyI	CCWWGG	3 cut(s)	105, 392, 528
TaaI	ACNGT	3 cut(s)	511, 664, 1073
TaiI	ACGT	2 cut(s)	94, 132
TaqI	TCGA	3 cut(s)	195, 258, 784
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	615, 1068, 1184
Tru9I	TTAA	3 cut(s)	615, 1068, 1184
TseFI	GTSAC	2 cut(s)	130, 1160
Tsp45I	GTSAC	2 cut(s)	130, 1160
TspDTI	ATGAA	4 cut(s)	261, 429, 847, 1005
XapI	RAATTY	6 cut(s)	180, 235, 598, 815, 889, 1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	2 cut(s)	506, 701
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.