Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Reverse (-)

75567 .. 79232

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCCAAGTGCTTAGTGGTGCCCCATTCCTATTCCTATTCCTATTGCTGCTACAGGAGGAACTCTAGCAGCACCAGGATCAGGAAGGCACCTCCGCAACAACATCAACTCAATTCCTTGGCCGCCGGCACTCTCTTCTCCGTCACCACCTCCTCAAACTCTTACACTCCCCTCAATTTGCAACGCCGCCGAATTCTCAGCGCTTTCGAGTCCGATGTTCCTCACCCTCTTCACCAGGGATCGGCGAAATTGAAGAGTAGTGAGAGTTTTGAGCAATGGGATTCATGGACAGCAAAGTTCTCTGGCGCATCCAATATCCCATTTCTGCTGCTGCAAATGCCTCAGATCATCCTGAATGCTCAAAATCTTATGGCTGGAAATAAAGCTGCTCTTTTGGCGGTCCCTTGGCTGGGAATGTTTACTGGTTTGATTGGAAACCTTTCGCTGCTTTCATATTTTGCAAAGAAGAGGGAGAAAGAGGCGATTGTGGTGCAAACATTGGGTGTAGTTTCCTTGTATACTGTATTTGCACAGCTCTCCTTGGCAGAAGCAATGCCACTACCGTACTTTGTGATTACCTCCATCGTCGTGGCAACCGGTCTTATTTTGAATTTTTTGAATTACTTTAATTTCCTCAATCCTGGAGTCTGGCTCTTCTGGGAAGATTTTATTACTGTTGGTGGGCTGTCAGTTCTTCCCCAAATTATGTGGTCTACATTTGTTCCATATATACCCAGCAGTATCGTGCCTGGAGCATTGGCTTTTGTTTTAGCTGTGGCAGCTGTAATTATGGCTCGAATGGGGAAACTCTCTTCAGAAGGAACCAAATTTGTTAGATCAATATCTGGATGGACAGCTACACTCCTCTTCATGTGGATGCCTGTTTCCCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGCTTATCAGCTGTCTCAATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCTCGTGCTCTTTTTATTCGTGATTTTATGTGGTTCACAGGTTCTTCATGGGCTTCTTTCTTTTATGGATATGGGAACATTGTGGCCTTATATTGGTTTAACAGTATCAGCAAGGAATTCTTCTTAGCAGCGACAGCTGGTTTGTTTTTATGGATAGGAATGGCTCTTTGGAGAGATGCTGTGGTGTATGGTTACAGCTCCCCTCTCACATCTTTAAAAGAGCTGGTTTCTGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

45.07

Weight (kDa)

9.55

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 88
AccI	GTMKAC	2 cut(s)	518, 713
AciI	CCGC	4 cut(s)	95, 123, 187, 398
AclWI	GGATC	4 cut(s)	86, 247, 973, 1209
AcoI	YGGCCR	2 cut(s)	3, 120
AcsI	RAATTY	5 cut(s)	192, 610, 827, 901, 1097
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	1 cut(s)	566
AfeI	AGCGCT	1 cut(s)	202
AfiI	CCNNNNNNNGG	6 cut(s)	81, 241, 409, 410, 894, 1074
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	253, 610, 619
AjnI	CCWGG	4 cut(s)	74, 234, 640, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	1132, 1164
AluBI	AGCT	9 cut(s)	386, 535, 773, 782, 857, 938, 1118, 1179, 1204
AluI	AGCT	9 cut(s)	386, 535, 773, 782, 857, 938, 1118, 1179, 1204
Alw21I	GWGCWC	1 cut(s)	991
Alw26I	GTCTC	1 cut(s)	946
AlwI	GGATC	4 cut(s)	86, 247, 973, 1209
Aor51HI	AGCGCT	1 cut(s)	202
AoxI	GGCC	3 cut(s)	3, 120, 1065
ApeKI	GCWGC	8 cut(s)	48, 69, 328, 331, 386, 445, 779, 1109
ApoI	RAATTY	5 cut(s)	192, 610, 827, 901, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	1105, 1137
AsiGI	ACCGGT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	2 cut(s)	203, 308
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	136, 215, 224
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1214
BanI	GGYRCC	2 cut(s)	19, 88
BauI	CACGAG	1 cut(s)	984
Bbv12I	GWGCWC	1 cut(s)	991
BbvI	GCAGC	8 cut(s)	35, 81, 315, 318, 373, 432, 791, 1121
BccI	CCATC	2 cut(s)	590, 843
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	4 cut(s)	76, 236, 642, 750
BcoDI	GTCTC	1 cut(s)	946
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	204
Bme1390I	CCNGG	4 cut(s)	76, 236, 642, 750
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	5 cut(s)	21, 90, 402, 823, 1216
BmrFI	CCNGG	4 cut(s)	76, 236, 642, 750
BmsI	GCATC	3 cut(s)	317, 867, 1147
BplI	GAGNNNNNCTC	2 cut(s)	636, 668
BpmI	CTGGAG	2 cut(s)	663, 771
BsaBI	GATNNNNATC	1 cut(s)	841
BsaJI	CCNNGG	4 cut(s)	117, 235, 404, 540
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 241, 409, 410, 894, 1074
Bse118I	RCCGGY	2 cut(s)	125, 596
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	3 cut(s)	281, 558, 963
Bse8I	GATNNNNATC	1 cut(s)	841
BseBI	CCWGG	4 cut(s)	76, 236, 642, 750
BseDI	CCNNGG	4 cut(s)	117, 235, 404, 540
BseGI	GGATG	4 cut(s)	308, 348, 854, 882
BseJI	GATNNNNATC	1 cut(s)	841
BseLI	CCNNNNNNNGG	6 cut(s)	81, 241, 409, 410, 894, 1074
BseMI	GCAATG	3 cut(s)	281, 558, 963
BseMII	CTCAG	2 cut(s)	211, 356
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	142, 854
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	8 cut(s)	35, 81, 315, 318, 373, 432, 791, 1121
BseYI	CCCAGC	2 cut(s)	409, 734
BshFI	GGCC	3 cut(s)	5, 122, 1067
BshNI	GGYRCC	2 cut(s)	19, 88
BshTI	ACCGGT	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	991
BsiSI	CCGG	2 cut(s)	126, 597
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	6 cut(s)	81, 241, 409, 410, 894, 1074
BsmAI	GTCTC	1 cut(s)	946
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	5, 122, 1067
Bsp1286I	GDGCHC	2 cut(s)	24, 991
Bsp143I	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
BspACI	CCGC	4 cut(s)	95, 123, 187, 398
BspANI	GGCC	3 cut(s)	5, 122, 1067
BspCNI	CTCAG	2 cut(s)	210, 355
BspLI	GGNNCC	5 cut(s)	21, 90, 402, 823, 1216
BspPI	GGATC	4 cut(s)	86, 247, 973, 1209
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	2 cut(s)	19, 88
BsrDI	GCAATG	3 cut(s)	281, 558, 963
BsrFI	RCCGGY	2 cut(s)	125, 596
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	125, 596
BssECI	CCNNGG	4 cut(s)	117, 235, 404, 540
BssMI	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
BssNAI	GTATAC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	984
BssT1I	CCWWGG	3 cut(s)	117, 404, 540
Bst1107I	GTATAC	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	4 cut(s)	76, 236, 642, 750
Bst4CI	ACNGT	4 cut(s)	523, 564, 676, 1085
Bst6I	CTCTTC	7 cut(s)	140, 234, 248, 461, 659, 817, 872
BstC8I	GCNNGC	2 cut(s)	127, 954
BstDEI	CTNAG	4 cut(s)	13, 197, 342, 1105
BstF5I	GGATG	4 cut(s)	308, 348, 854, 882
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	203, 308
BstKTI	GATC	6 cut(s)	81, 242, 348, 839, 981, 1217
BstMAI	GTCTC	1 cut(s)	946
BstMBI	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 395, 779, 1115
BstNI	CCWGG	4 cut(s)	76, 236, 642, 750
BstSCI	CCNGG	4 cut(s)	74, 234, 640, 748
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	8 cut(s)	35, 81, 315, 318, 373, 432, 791, 1121
BstX2I	RGATCY	1 cut(s)	1214
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	1214
BstZ17I	GTATAC	1 cut(s)	519
BsuRI	GGCC	3 cut(s)	5, 122, 1067
BtsCI	GGATG	4 cut(s)	308, 348, 854, 882
Cac8I	GCNNGC	2 cut(s)	127, 954
CfoI	GCGC	2 cut(s)	203, 308
Cfr10I	RCCGGY	2 cut(s)	125, 596
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	565
CspAI	ACCGGT	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	689, 724
CviAII	CATG	3 cut(s)	285, 871, 1029
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	4 cut(s)	13, 197, 342, 1105
DpnI	GATC	6 cut(s)	80, 241, 347, 838, 980, 1216
DpnII	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
DraI	TTTAAA	1 cut(s)	1197
EaeI	YGGCCR	2 cut(s)	3, 120
Eam1104I	CTCTTC	7 cut(s)	140, 234, 248, 461, 659, 817, 872
EarI	CTCTTC	7 cut(s)	140, 234, 248, 461, 659, 817, 872
Eco130I	CCWWGG	3 cut(s)	117, 404, 540
Eco47I	GGWCC	1 cut(s)	400
Eco47III	AGCGCT	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	798
EcoRI	GAATTC	2 cut(s)	192, 1097
EcoRII	CCWGG	4 cut(s)	74, 234, 640, 748
EcoT14I	CCWWGG	3 cut(s)	117, 404, 540
ErhI	CCWWGG	3 cut(s)	117, 404, 540
FaeI	CATG	3 cut(s)	288, 874, 1032
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 1085, 1117
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	3 cut(s)	284, 870, 1028
FblI	GTMKAC	2 cut(s)	518, 713
FokI	GGATG	4 cut(s)	295, 335, 861, 889
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	202, 307
GsaI	CCCAGC	2 cut(s)	413, 738
GsuI	CTGGAG	2 cut(s)	663, 771
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	5, 122, 1067
HapII	CCGG	2 cut(s)	126, 597
HhaI	GCGC	2 cut(s)	203, 308
Hin1II	CATG	3 cut(s)	288, 874, 1032
Hin6I	GCGC	2 cut(s)	201, 306
HinP1I	GCGC	2 cut(s)	201, 306
HinfI	GANTC	3 cut(s)	209, 281, 645
HpaII	CCGG	2 cut(s)	126, 597
HphI	GGTGA	3 cut(s)	136, 215, 224
Hpy166II	GTNNAC	5 cut(s)	420, 519, 714, 897, 1017
Hpy188I	TCNGA	3 cut(s)	214, 345, 817
Hpy188III	TCNNGA	6 cut(s)	82, 352, 846, 914, 1001, 1212
Hpy8I	GTNNAC	5 cut(s)	420, 519, 714, 897, 1017
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	79, 812
HpyCH4III	ACNGT	4 cut(s)	523, 564, 676, 1085
HpyCH4V	TGCA	6 cut(s)	181, 334, 461, 493, 530, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 395, 779, 1115
HpyF3I	CTNAG	4 cut(s)	13, 197, 342, 1105
Hsp92II	CATG	3 cut(s)	288, 874, 1032
HspAI	GCGC	2 cut(s)	201, 306
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	2 cut(s)	752, 1184
Lsp1109I	GCAGC	8 cut(s)	35, 81, 315, 318, 373, 432, 791, 1121
LweI	GCATC	3 cut(s)	317, 867, 1147
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	142, 1172
MalI	GATC	6 cut(s)	80, 241, 347, 838, 980, 1216
MboI	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
MflI	RGATCY	1 cut(s)	1214
MhlI	GDGCHC	2 cut(s)	24, 991
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	218, 654
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	627, 1080, 1196
MslI	CAYNNNNRTG	2 cut(s)	587, 875
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	782, 938, 1118
MspI	CCGG	2 cut(s)	126, 597
MspR9I	CCNGG	4 cut(s)	76, 236, 642, 750
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	4 cut(s)	76, 236, 642, 750
MwoI	GCNNNNNNNGC	4 cut(s)	337, 395, 779, 1115
NaeI	GCCGGC	1 cut(s)	127
NdeII	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	3 cut(s)	288, 874, 1032
NlaIV	GGNNCC	5 cut(s)	21, 90, 402, 823, 1216
NmuCI	GTSAC	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	659
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	640
PinAI	ACCGGT	1 cut(s)	596
PleI	GAGTC	2 cut(s)	217, 653
PpsI	GAGTC	2 cut(s)	217, 653
Psp6I	CCWGG	4 cut(s)	74, 234, 640, 748
PspFI	CCCAGC	2 cut(s)	409, 734
PspGI	CCWGG	4 cut(s)	74, 234, 640, 748
PspN4I	GGNNCC	5 cut(s)	21, 90, 402, 823, 1216
PspPI	GGNCC	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	1214
PvuII	CAGCTG	3 cut(s)	782, 938, 1118
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	2 cut(s)	587, 875
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	627, 1080, 1196
Sau3AI	GATC	6 cut(s)	78, 239, 345, 836, 978, 1214
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	2 cut(s)	218, 654
ScrFI	CCNGG	4 cut(s)	76, 236, 642, 750
SduI	GDGCHC	2 cut(s)	24, 991
SfaNI	GCATC	3 cut(s)	317, 867, 1147
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	2 cut(s)	587, 875
SsiI	CCGC	4 cut(s)	95, 123, 187, 398
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	74, 234, 640, 748
StyI	CCWWGG	3 cut(s)	117, 404, 540
TaaI	ACNGT	4 cut(s)	523, 564, 676, 1085
TaqI	TCGA	2 cut(s)	207, 796
TauI	GCSGC	2 cut(s)	125, 189
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	627, 1080, 1196
Tru9I	TTAA	3 cut(s)	627, 1080, 1196
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	8 cut(s)	48, 69, 328, 331, 386, 445, 779, 1109
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	273, 441, 859, 1017
TspGWI	ACGGA	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	5 cut(s)	192, 610, 827, 901, 1097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	2 cut(s)	518, 713
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.