Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Forward (+)

21567626 .. 21569590

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAGAGCCTAGTGGTGGTGCCGTACTCCTCCTACATCCCTGGTCCGCCTCCTCATCCTCCACTGCAACAACATCATCATCTGAAATCCTTTCCCGCCTGCTCCTCTTCCTCCTCGTCAATCCAACACAACACCAACACCAACGCTCTCACCGTCTCTTCCGCTGGCCAAGGCCAATGCTTATTGTTCAACTTTTACCATCCCATTCCTTTGCGTTTGCGGCGCCACTCAACTCTCAGCGCTCTTGACTCCGACGTCCCTCACCCTCTTCACCAGGGATCAGTGAAATCCACGAGCAGCAAAACTGGTTTCGAGCAATGGAATTCGTGGACAGCAAAGTTCTCGGGCGCATCAAATATCCCATTTCTCTTACTGCAAATGCCTCAAATCTACCTCAATGCCCAAAATCTTCTGGCAGGAAATAAAGCTGCCCTTTTGGCAGTCCCATGGATGGGAATGTTTACTGGTTTACTTGGAAACCTTTCTCTGCTTTCATATTTTGCAAAGAAGAGGGAGAATGAGGCCATTGTGGTGCAGACATTGGGTGTAATTTCCTTATATGTGGTTTTTGCTCAGCTTTCGATGGCAGATGCAATGCCTCTACCTTACTTTGTCATTACCTCCATTGTTGTCGCAACTGGTCTTGTTTTGAATTTCTTGAATTACTTTGGTTGGCTTAATGCTGGACTCTGGCGCTTCTGGGAGGACTTTATTACTGTTGGTGGGCTATCGGTTCTTCCCCAATATGTGGTCTACGTTTGTTCCACATATACCCAACAGTATTTTGCCCGGGGCATTGGCTTTTGTTGTAGCTGTGGTGGCAATTGTTATGGCTCGGATGGGAAAACTCTCCGAAGGTGGCATAAAATTTGTTGGAGGAATATCTGGATGGACAGCTACACTTCTCTTCATGTGGATGCCAGTTTCACAAATGTGGACAAATTTCCTAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.42

Weight (kDa)

8.97

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	22, 225
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	756
AciI	CCGC	4 cut(s)	50, 99, 165, 223
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	2 cut(s)	3, 169
AcsI	RAATTY	4 cut(s)	325, 655, 870, 944
AcyI	GRCGYC	2 cut(s)	226, 258
AfaI	GTAC	1 cut(s)	29
AfeI	AGCGCT	1 cut(s)	244
AfiI	CCNNNNNNNGG	4 cut(s)	19, 454, 455, 751
AgsI	TTSAA	3 cut(s)	193, 655, 664
AjnI	CCWGG	2 cut(s)	43, 276
AleI	CACNNNNGTG	1 cut(s)	935
AluBI	AGCT	4 cut(s)	431, 580, 816, 900
AluI	AGCT	4 cut(s)	431, 580, 816, 900
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	2 cut(s)	346, 792
Aor51HI	AGCGCT	1 cut(s)	244
AoxI	GGCC	4 cut(s)	3, 169, 175, 525
ApeKI	GCWGC	2 cut(s)	300, 431
ApoI	RAATTY	4 cut(s)	325, 655, 870, 944
Asp700I	GAANNNNTTC	1 cut(s)	484
AspLEI	GCGC	4 cut(s)	228, 245, 353, 699
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	2 cut(s)	793, 794
AsuHPI	GGTGA	3 cut(s)	145, 257, 266
AvaI	CYCGRG	2 cut(s)	346, 792
AvaII	GGWCC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	22, 225
BauI	CACGAG	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	312, 418
BccI	CCATC	5 cut(s)	210, 448, 580, 836, 886
BceAI	ACGGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	2 cut(s)	45, 278
BcnI	CCSGG	2 cut(s)	793, 794
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	3 cut(s)	229, 246, 700
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	224, 301, 432
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	3 cut(s)	225, 302, 433
Bme1390I	CCNGG	4 cut(s)	45, 278, 793, 794
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	346, 792
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	24, 227
BmrFI	CCNGG	4 cut(s)	45, 278, 793, 794
BmsI	GCATC	3 cut(s)	362, 583, 910
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuMI	CCSGG	2 cut(s)	793, 794
BsaHI	GRCGYC	2 cut(s)	226, 258
BsaJI	CCNNGG	6 cut(s)	43, 172, 277, 449, 792, 793
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 454, 455, 751
Bse1I	ACTGG	4 cut(s)	313, 472, 646, 924
Bse3DI	GCAATG	2 cut(s)	326, 603
BseBI	CCWGG	2 cut(s)	45, 278
BseDI	CCNNGG	6 cut(s)	43, 172, 277, 449, 792, 793
BseGI	GGATG	7 cut(s)	39, 58, 202, 459, 847, 897, 925
BseLI	CCNNNNNNNGG	4 cut(s)	19, 454, 455, 751
BseMI	GCAATG	2 cut(s)	326, 603
BseMII	CTCAG	2 cut(s)	253, 590
BseNI	ACTGG	4 cut(s)	313, 472, 646, 924
BseRI	GAGGAG	4 cut(s)	22, 45, 97, 106
BseXI	GCAGC	2 cut(s)	312, 418
BsgI	GTGCAG	1 cut(s)	557
BshFI	GGCC	4 cut(s)	5, 171, 177, 527
BshNI	GGYRCC	2 cut(s)	22, 225
BsiHKCI	CYCGRG	2 cut(s)	346, 792
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	2 cut(s)	245, 431
BslI	CCNNNNNNNGG	4 cut(s)	19, 454, 455, 751
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	245, 431
BsnI	GGCC	4 cut(s)	5, 171, 177, 527
BsoBI	CYCGRG	2 cut(s)	346, 792
Bsp143I	GATC	1 cut(s)	281
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	4 cut(s)	50, 99, 165, 223
BspANI	GGCC	4 cut(s)	5, 171, 177, 527
BspCNI	CTCAG	2 cut(s)	252, 589
BspLI	GGNNCC	2 cut(s)	24, 227
BspPI	GGATC	1 cut(s)	289
BspT107I	GGYRCC	2 cut(s)	22, 225
BsrDI	GCAATG	2 cut(s)	326, 603
BsrI	ACTGG	4 cut(s)	313, 472, 646, 924
BssECI	CCNNGG	6 cut(s)	43, 172, 277, 449, 792, 793
BssMI	GATC	1 cut(s)	281
BssNI	GRCGYC	2 cut(s)	226, 258
BssSI	CACGAG	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	172, 449
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	45, 278
Bst4CI	ACNGT	3 cut(s)	157, 721, 783
Bst6I	CTCTTC	5 cut(s)	115, 166, 276, 506, 915
BstACI	GRCGYC	2 cut(s)	226, 258
BstC8I	GCNNGC	2 cut(s)	103, 169
BstDEI	CTNAG	2 cut(s)	239, 576
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	7 cut(s)	39, 58, 202, 459, 847, 897, 925
BstH2I	RGCGCY	3 cut(s)	229, 246, 700
BstHHI	GCGC	4 cut(s)	228, 245, 353, 699
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 440, 822
BstNI	CCWGG	2 cut(s)	45, 278
BstSCI	CCNGG	4 cut(s)	43, 276, 791, 792
BstV1I	GCAGC	2 cut(s)	312, 418
BsuRI	GGCC	4 cut(s)	5, 171, 177, 527
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	7 cut(s)	39, 58, 202, 459, 847, 897, 925
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 291
Cac8I	GCNNGC	2 cut(s)	103, 169
CfoI	GCGC	4 cut(s)	228, 245, 353, 699
Cfr13I	GGNCC	1 cut(s)	47
Cfr9I	CCCGGG	1 cut(s)	792
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	450, 914
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	239, 576
DinI	GGCGCC	1 cut(s)	227
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	3, 169
Eam1104I	CTCTTC	5 cut(s)	115, 166, 276, 506, 915
EarI	CTCTTC	5 cut(s)	115, 166, 276, 506, 915
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	172, 449
Eco47I	GGWCC	1 cut(s)	47
Eco47III	AGCGCT	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	346, 792
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	43, 276
EcoT14I	CCWWGG	2 cut(s)	172, 449
EgeI	GGCGCC	1 cut(s)	227
EheI	GGCGCC	1 cut(s)	227
ErhI	CCWWGG	2 cut(s)	172, 449
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	453, 917
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	2 cut(s)	245, 431
FatI	CATG	2 cut(s)	449, 913
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	3 cut(s)	224, 301, 432
FokI	GGATG	7 cut(s)	26, 45, 189, 466, 854, 904, 932
Fsp4HI	GCNGC	3 cut(s)	224, 301, 432
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	4 cut(s)	227, 244, 352, 698
GluI	GCNGC	3 cut(s)	224, 301, 432
HaeII	RGCGCY	3 cut(s)	229, 246, 700
HaeIII	GGCC	4 cut(s)	5, 171, 177, 527
HapII	CCGG	1 cut(s)	793
HhaI	GCGC	4 cut(s)	228, 245, 353, 699
Hin1I	GRCGYC	2 cut(s)	226, 258
Hin1II	CATG	2 cut(s)	453, 917
Hin6I	GCGC	4 cut(s)	226, 243, 351, 697
HinP1I	GCGC	4 cut(s)	226, 243, 351, 697
HinfI	GANTC	2 cut(s)	251, 690
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	3 cut(s)	145, 257, 266
Hpy166II	GTNNAC	5 cut(s)	333, 465, 473, 757, 940
Hpy188I	TCNGA	4 cut(s)	87, 256, 841, 857
Hpy188III	TCNNGA	4 cut(s)	248, 661, 889, 957
Hpy8I	GTNNAC	5 cut(s)	333, 465, 473, 757, 940
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	852
HpyCH4III	ACNGT	3 cut(s)	157, 721, 783
HpyCH4IV	ACGT	2 cut(s)	258, 759
HpyCH4V	TGCA	5 cut(s)	70, 379, 506, 538, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 440, 822
HpyF3I	CTNAG	2 cut(s)	239, 576
HpySE526I	ACGT	2 cut(s)	258, 759
Hsp92I	GRCGYC	2 cut(s)	226, 258
Hsp92II	CATG	2 cut(s)	453, 917
HspAI	GCGC	4 cut(s)	226, 243, 351, 697
KasI	GGCGCC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	2 cut(s)	312, 418
LweI	GCATC	3 cut(s)	362, 583, 910
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	258, 759
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	7 cut(s)	102, 153, 263, 404, 523, 731, 902
MfeI	CAATTG	1 cut(s)	826
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	7 cut(s)	325, 552, 655, 664, 826, 870, 944
MluNI	TGGCCA	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	245, 684
MmeI	TCCRAC	3 cut(s)	151, 279, 857
Mox20I	TGGCCA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	3 cut(s)	533, 918, 935
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	4 cut(s)	45, 278, 793, 794
MunI	CAATTG	1 cut(s)	826
MvaI	CCWGG	2 cut(s)	45, 278
MwoI	GCNNNNNNNGC	3 cut(s)	223, 440, 822
NarI	GGCGCC	1 cut(s)	226
NciI	CCSGG	2 cut(s)	793, 794
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	453, 917
NlaIV	GGNNCC	2 cut(s)	24, 227
NmeAIII	GCCGAG	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	935
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	225, 302, 433
PleI	GAGTC	2 cut(s)	245, 684
PluTI	GGCGCC	1 cut(s)	229
PpsI	GAGTC	2 cut(s)	245, 684
Psp6I	CCWGG	2 cut(s)	43, 276
PspGI	CCWGG	2 cut(s)	43, 276
PspN4I	GGNNCC	2 cut(s)	24, 227
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	3 cut(s)	533, 918, 935
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	3 cut(s)	224, 301, 432
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	245, 684
ScrFI	CCNGG	4 cut(s)	45, 278, 793, 794
SfaNI	GCATC	3 cut(s)	362, 583, 910
SfoI	GGCGCC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	47
SmaI	CCCGGG	1 cut(s)	794
SmiMI	CAYNNNNRTG	3 cut(s)	533, 918, 935
Sse9I	AATT	7 cut(s)	325, 552, 655, 664, 826, 870, 944
SsiI	CCGC	4 cut(s)	50, 99, 165, 223
SspDI	GGCGCC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	4 cut(s)	43, 276, 791, 792
StyI	CCWWGG	2 cut(s)	172, 449
TaaI	ACNGT	3 cut(s)	157, 721, 783
TaiI	ACGT	2 cut(s)	261, 762
TaqI	TCGA	2 cut(s)	315, 584
TasI	AATT	7 cut(s)	325, 552, 655, 664, 826, 870, 944
TauI	GCSGC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	2 cut(s)	72, 291
TseI	GCWGC	2 cut(s)	300, 431
TspDTI	ATGAA	2 cut(s)	486, 902
TspMI	CCCGGG	1 cut(s)	792
TspRI	CASTG	2 cut(s)	72, 291
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	4 cut(s)	325, 655, 870, 944
XmaI	CCCGGG	1 cut(s)	792
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.