Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Forward (+)

66735336 .. 66739268

Gene Structure 3933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG465600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCCAAGTGCTTAGTGGTGCCCCATTCCTATTCCTATTCCTATTGCTGCTATCGCTATGGGAGGAACTCTAGCAGCACCAGGAACAGGAAGGCACCTCCGCAACAACATCAGCTCAATTCCTTGGCCGCCGGCACTCTCTTCTCCGTCGCCACCTCTTACACTCCCCTCAATTTGCAACGCCGCCGAATTCTCAGCGCTCTCGAGTCCGATGTTCCTCACCCTCTTCACCAGGGATCCGCGAAATTGAAGAGTAGTGAGAGTTTTGAGCAATGGGATTCATGGACAGCAAAGTTCTCTGGCGCATCCAATATTCCATTTCTGCTGCTGCAAATGCCTCAGATCATCCTGAATGCCCAAAATCTTATGGCTGGAAATAAAGCTGCTCTTTTGGCAGTCCCTTGGCTGGGAATGTTTACTGGTTTGATTGGAAACCTTTCGCTGCTTTCATATTTTGCGAAGAAGAGGGAGAAAGAGGCGATTGTGGTGCAAACATTGGGTGTAGTTTCCTTGTATACTGTATTTGCACAGCTCTCCTTGGCAGAAGCAATGCCACTACCATACTTTGTGATTACCTCCATCGTCGTGGCAACCGGTCTTATTTTGAATTTTTTGAATTACTTTAATTTCCTCAATCCTGGAGTCTGGCTCTTCTGGGAAGATTTTATTACTGTTGGTGGGCTGTCAGTTCTTCCCCAAATTATGTGGTCTACATTTGTTCCATATATACCCAGCAGTATCGTGCCCGGAGCATTGGCTTTTGTTTTAGCGGTGGCAGCTGTAATTATGGCTCGAATGGGGAAACTCTCTTCAGAAGGAACCAAATTTGTTAGATCAATATCTGGATGGACAGCTACGCTCCTCTTCATGTGGATGCCTGTTTCCCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGCTTATCAGCTGTCTCAATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCTCGTGCTCTTTTTATTCGTGATTTTATGTGGTTCACAGGTTCTTCATGGGCTTCTTTCTTTTATGGATATGGGAACATTGTGGCCTTATATTGGTATGGTGTTCCTGATGTTTGGTTCTTCATTGGTAGCATTTTGTTGGCGTTATTAATTTCTTCTAAGTGGCATCTTATACTACAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

43.12

Weight (kDa)

9.57

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 94
AccI	GTMKAC	2 cut(s)	515, 710
AccII	CGCG	1 cut(s)	242
AciI	CCGC	5 cut(s)	101, 129, 184, 240, 770
AclWI	GGATC	3 cut(s)	231, 244, 970
AcoI	YGGCCR	2 cut(s)	3, 126
AcsI	RAATTY	4 cut(s)	189, 607, 824, 898
AcuI	CTGAAG	1 cut(s)	795
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	5 cut(s)	87, 406, 407, 891, 1071
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	250, 607, 616
AjnI	CCWGG	3 cut(s)	80, 231, 637
AluBI	AGCT	6 cut(s)	115, 383, 532, 779, 854, 935
AluI	AGCT	6 cut(s)	115, 383, 532, 779, 854, 935
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	3 cut(s)	231, 244, 970
Ama87I	CYCGRG	1 cut(s)	203
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	3 cut(s)	3, 126, 1062
ApeKI	GCWGC	7 cut(s)	48, 75, 325, 328, 383, 442, 776
ApoI	RAATTY	4 cut(s)	189, 607, 824, 898
AseI	ATTAAT	1 cut(s)	1127
AsiGI	ACCGGT	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	2 cut(s)	200, 305
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	2 cut(s)	212, 221
AvaI	CYCGRG	1 cut(s)	203
BaeGI	GKGCMC	2 cut(s)	24, 747
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	236
BanI	GGYRCC	2 cut(s)	19, 94
BauI	CACGAG	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	7 cut(s)	35, 87, 312, 315, 370, 429, 788
BccI	CCATC	2 cut(s)	587, 840
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	3 cut(s)	82, 233, 639
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	943
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	1154
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	9 cut(s)	49, 76, 129, 184, 326, 329, 384, 443, 777
BlsI	GCNGC	9 cut(s)	50, 77, 130, 185, 327, 330, 385, 444, 778
Bme1390I	CCNGG	4 cut(s)	82, 233, 639, 747
BmeT110I	CYCGRG	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	21, 96, 238, 820
BmrFI	CCNGG	4 cut(s)	82, 233, 639, 747
BmsI	GCATC	3 cut(s)	314, 864, 1153
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
BpmI	CTGGAG	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	747
BsaBI	GATNNNNATC	1 cut(s)	838
BsaJI	CCNNGG	4 cut(s)	123, 232, 401, 537
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 406, 407, 891, 1071
Bse118I	RCCGGY	2 cut(s)	131, 593
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	3 cut(s)	278, 555, 960
Bse8I	GATNNNNATC	1 cut(s)	838
BseBI	CCWGG	3 cut(s)	82, 233, 639
BseDI	CCNNGG	4 cut(s)	123, 232, 401, 537
BseGI	GGATG	4 cut(s)	305, 345, 851, 879
BseJI	GATNNNNATC	1 cut(s)	838
BseLI	CCNNNNNNNGG	5 cut(s)	87, 406, 407, 891, 1071
BseMI	GCAATG	3 cut(s)	278, 555, 960
BseMII	CTCAG	2 cut(s)	208, 353
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	851
BseSI	GKGCMC	2 cut(s)	24, 747
BseXI	GCAGC	7 cut(s)	35, 87, 312, 315, 370, 429, 788
BseYI	CCCAGC	2 cut(s)	406, 731
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	3 cut(s)	5, 128, 1064
BshNI	GGYRCC	2 cut(s)	19, 94
BshTI	ACCGGT	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	988
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	132, 594, 747
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	5 cut(s)	87, 406, 407, 891, 1071
BsmAI	GTCTC	1 cut(s)	943
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	3 cut(s)	5, 128, 1064
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	24, 747, 988
Bsp143I	GATC	4 cut(s)	236, 342, 833, 975
BspACI	CCGC	5 cut(s)	101, 129, 184, 240, 770
BspANI	GGCC	3 cut(s)	5, 128, 1064
BspCNI	CTCAG	2 cut(s)	207, 352
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	4 cut(s)	21, 96, 238, 820
BspPI	GGATC	3 cut(s)	231, 244, 970
BspQI	GCTCTTC	1 cut(s)	656
BspT107I	GGYRCC	2 cut(s)	19, 94
BsrDI	GCAATG	3 cut(s)	278, 555, 960
BsrFI	RCCGGY	2 cut(s)	131, 593
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	2 cut(s)	131, 593
BssECI	CCNNGG	4 cut(s)	123, 232, 401, 537
BssMI	GATC	4 cut(s)	236, 342, 833, 975
BssNAI	GTATAC	1 cut(s)	516
BssSI	CACGAG	1 cut(s)	981
BssT1I	CCWWGG	3 cut(s)	123, 401, 537
Bst1107I	GTATAC	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	981
Bst2UI	CCWGG	3 cut(s)	82, 233, 639
Bst4CI	ACNGT	2 cut(s)	520, 673
Bst6I	CTCTTC	7 cut(s)	146, 231, 245, 458, 656, 814, 869
BstC8I	GCNNGC	2 cut(s)	133, 951
BstDEI	CTNAG	4 cut(s)	13, 194, 339, 1137
BstF5I	GGATG	4 cut(s)	305, 345, 851, 879
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	200, 305
BstKTI	GATC	4 cut(s)	239, 345, 836, 978
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	4 cut(s)	236, 342, 833, 975
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 334, 392, 776
BstNI	CCWGG	3 cut(s)	82, 233, 639
BstSCI	CCNGG	4 cut(s)	80, 231, 637, 745
BstSFI	CTRYAG	1 cut(s)	1154
BstSLI	GKGCMC	2 cut(s)	24, 747
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	7 cut(s)	35, 87, 312, 315, 370, 429, 788
BstX2I	RGATCY	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	236
BstZ17I	GTATAC	1 cut(s)	516
BsuRI	GGCC	3 cut(s)	5, 128, 1064
BtsCI	GGATG	4 cut(s)	305, 345, 851, 879
Cac8I	GCNNGC	2 cut(s)	133, 951
CfoI	GCGC	2 cut(s)	200, 305
Cfr10I	RCCGGY	2 cut(s)	131, 593
CspAI	ACCGGT	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	686, 721
CviAII	CATG	3 cut(s)	282, 868, 1026
DdeI	CTNAG	4 cut(s)	13, 194, 339, 1137
DpnI	GATC	4 cut(s)	238, 344, 835, 977
DpnII	GATC	4 cut(s)	236, 342, 833, 975
EaeI	YGGCCR	2 cut(s)	3, 126
Eam1104I	CTCTTC	7 cut(s)	146, 231, 245, 458, 656, 814, 869
EarI	CTCTTC	7 cut(s)	146, 231, 245, 458, 656, 814, 869
Eco130I	CCWWGG	3 cut(s)	123, 401, 537
Eco47III	AGCGCT	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	3 cut(s)	80, 231, 637
EcoT14I	CCWWGG	3 cut(s)	123, 401, 537
ErhI	CCWWGG	3 cut(s)	123, 401, 537
FaeI	CATG	3 cut(s)	285, 871, 1029
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	281, 867, 1025
FblI	GTMKAC	2 cut(s)	515, 710
Fnu4HI	GCNGC	9 cut(s)	49, 76, 129, 184, 326, 329, 384, 443, 777
FokI	GGATG	4 cut(s)	292, 332, 858, 886
Fsp4HI	GCNGC	9 cut(s)	49, 76, 129, 184, 326, 329, 384, 443, 777
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	2 cut(s)	199, 304
GluI	GCNGC	9 cut(s)	49, 76, 129, 184, 326, 329, 384, 443, 777
GsaI	CCCAGC	2 cut(s)	410, 735
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	5, 128, 1064
HapII	CCGG	3 cut(s)	132, 594, 747
HhaI	GCGC	2 cut(s)	200, 305
Hin1II	CATG	3 cut(s)	285, 871, 1029
Hin6I	GCGC	2 cut(s)	198, 303
HinP1I	GCGC	2 cut(s)	198, 303
HinfI	GANTC	3 cut(s)	206, 278, 642
HpaII	CCGG	3 cut(s)	132, 594, 747
HphI	GGTGA	2 cut(s)	212, 221
Hpy166II	GTNNAC	5 cut(s)	417, 516, 711, 894, 1014
Hpy188I	TCNGA	3 cut(s)	211, 342, 814
Hpy188III	TCNNGA	6 cut(s)	203, 349, 843, 911, 998, 1085
Hpy8I	GTNNAC	5 cut(s)	417, 516, 711, 894, 1014
Hpy99I	CGWCG	2 cut(s)	152, 587
HpyAV	CCTTC	2 cut(s)	85, 809
HpyCH4III	ACNGT	2 cut(s)	520, 673
HpyCH4V	TGCA	5 cut(s)	178, 331, 490, 527, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 334, 392, 776
HpyF3I	CTNAG	4 cut(s)	13, 194, 339, 1137
Hsp92II	CATG	3 cut(s)	285, 871, 1029
HspAI	GCGC	2 cut(s)	198, 303
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	236, 342, 833, 975
LguI	GCTCTTC	1 cut(s)	656
LmnI	GCTCC	2 cut(s)	749, 864
Lsp1109I	GCAGC	7 cut(s)	35, 87, 312, 315, 370, 429, 788
LweI	GCATC	3 cut(s)	314, 864, 1153
MaeI	CTAG	1 cut(s)	72
MalI	GATC	4 cut(s)	238, 344, 835, 977
MboI	GATC	4 cut(s)	236, 342, 833, 975
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	3 cut(s)	24, 747, 988
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	215, 651
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	624, 1127, 1162
MslI	CAYNNNNRTG	2 cut(s)	584, 872
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	779, 935
MspI	CCGG	3 cut(s)	132, 594, 747
MspR9I	CCNGG	4 cut(s)	82, 233, 639, 747
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	3 cut(s)	82, 233, 639
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	54, 334, 392, 776
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	747
NdeII	GATC	4 cut(s)	236, 342, 833, 975
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	285, 871, 1029
NlaIV	GGNNCC	4 cut(s)	21, 96, 238, 820
PaeR7I	CTCGAG	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	656
PctI	GAATGC	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	637
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	9 cut(s)	50, 77, 130, 185, 327, 330, 385, 444, 778
PleI	GAGTC	2 cut(s)	214, 650
PpsI	GAGTC	2 cut(s)	214, 650
PshBI	ATTAAT	1 cut(s)	1127
Psp6I	CCWGG	3 cut(s)	80, 231, 637
PspFI	CCCAGC	2 cut(s)	406, 731
PspGI	CCWGG	3 cut(s)	80, 231, 637
PspN4I	GGNNCC	4 cut(s)	21, 96, 238, 820
PsuI	RGATCY	1 cut(s)	236
PvuII	CAGCTG	2 cut(s)	779, 935
RseI	CAYNNNNRTG	2 cut(s)	584, 872
SapI	GCTCTTC	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	624, 1127, 1162
SatI	GCNGC	9 cut(s)	49, 76, 129, 184, 326, 329, 384, 443, 777
Sau3AI	GATC	4 cut(s)	236, 342, 833, 975
SchI	GAGTC	2 cut(s)	215, 651
ScrFI	CCNGG	4 cut(s)	82, 233, 639, 747
SduI	GDGCHC	3 cut(s)	24, 747, 988
SfaNI	GCATC	3 cut(s)	314, 864, 1153
SfcI	CTRYAG	1 cut(s)	1154
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	584, 872
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	5 cut(s)	101, 129, 184, 240, 770
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	4 cut(s)	80, 231, 637, 745
StyI	CCWWGG	3 cut(s)	123, 401, 537
TaaI	ACNGT	2 cut(s)	520, 673
TaqI	TCGA	2 cut(s)	204, 793
TauI	GCSGC	2 cut(s)	131, 186
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	624, 1127, 1162
Tru9I	TTAA	3 cut(s)	624, 1127, 1162
TseI	GCWGC	7 cut(s)	48, 75, 325, 328, 383, 442, 776
TspDTI	ATGAA	5 cut(s)	270, 438, 856, 1014, 1090
TspGWI	ACGGA	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	1127
XapI	RAATTY	4 cut(s)	189, 607, 824, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	2 cut(s)	515, 710
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.