Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Forward (+)

69736502 .. 69741618

Gene Structure 5117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG446200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCCAAGTGCTTAGTGGTGCCCCATTCCTATTCCTATTCCTATTCCTATTGCTGCTATAGGAGGAACTCTAGCAGCACCAGGAACAGGAAGGCACCTCCGCAACAACATCAGCTCAATTCCTTGGCCGCCGGCACTCTCTTCTCCGTCGCCACCTCTTCAAACTCTTACAGTACTCCCCTCAATTTGCAACGCCGCCGAATTCTCAGCGCTCTCGAGTCCGATGTTCCTCACCCTCTTCACCAGGGATCGGCGAAATTGAAGAGTAGTGAGAGTTTTGAGCAATGGGATTCATGGACAGCAAAGTTCTCTGGCGCATCCAATATTCCATTTCTGCTGCTGCAAATGCCTCAGATCATCCTGAATGCTCAAAATCTTATGGCTGGAAATAAAGCTGCTCTTTTGGCAGTCCCTTGGCTGGGAATGTTTACTGGTTTGCTTGGAAACCTTTCGCTGCTTTCATATTTTGCAAAGAAGAGGGAGAAAGAGGCGATTGTGGTGCAAACATTGGGTGTAGTTTCCTTGTATACTGTATTTGCACAGCTCTCCTTGGCAGAAGCAATGCCTCTACCATACTTTGTGATTACCTCCATCGTCGTGGCAACCGGTCTTATTTTGAATTTTTTGAATTACTTTAACTTCCTCAATCCTGGAGTCTGGCTCTTCTGGGAAGATTTTATTACTGTTGGTGGGCTGTCAGTTCTTCCCCAAATTATGTGGTCTACATTTGTTCCATATATACCCAGCAGTATCGTGCCTGGAGCATTGGCTTTTGTTTTAGCTGTGGCAGCTGTAATTATGGCTCGAATGGGGAAACTCTCTTCAGAAGGAACCAAATTTGTTAGATCAATATCTGGATGGACAGCTACACTCCTCTTCATGTGGATGCCTGTTTCCCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGCTTATCAGCTGTCTCAATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCTCGTGCTCTTTTTATTCGTGATTTTATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.79

Weight (kDa)

9.68

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 94
AccI	GTMKAC	2 cut(s)	527, 722
AciI	CCGC	3 cut(s)	101, 129, 196
AclWI	GGATC	2 cut(s)	256, 982
AcoI	YGGCCR	2 cut(s)	3, 126
AcsI	RAATTY	4 cut(s)	201, 619, 836, 910
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	5 cut(s)	87, 250, 418, 419, 903
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	4 cut(s)	162, 262, 619, 628
AjnI	CCWGG	4 cut(s)	80, 243, 649, 757
AluBI	AGCT	7 cut(s)	115, 395, 544, 782, 791, 866, 947
AluI	AGCT	7 cut(s)	115, 395, 544, 782, 791, 866, 947
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	1 cut(s)	955
AlwI	GGATC	2 cut(s)	256, 982
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	2 cut(s)	3, 126
ApeKI	GCWGC	7 cut(s)	54, 75, 337, 340, 395, 454, 788
ApoI	RAATTY	4 cut(s)	201, 619, 836, 910
AsiGI	ACCGGT	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	212, 317
AsuHPI	GGTGA	2 cut(s)	224, 233
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	19, 94
BauI	CACGAG	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	7 cut(s)	41, 87, 324, 327, 382, 441, 800
BccI	CCATC	2 cut(s)	599, 852
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	4 cut(s)	82, 245, 651, 759
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	9 cut(s)	55, 76, 129, 196, 338, 341, 396, 455, 789
BlsI	GCNGC	9 cut(s)	56, 77, 130, 197, 339, 342, 397, 456, 790
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	4 cut(s)	82, 245, 651, 759
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	3 cut(s)	21, 96, 832
BmrFI	CCNGG	4 cut(s)	82, 245, 651, 759
BmsI	GCATC	2 cut(s)	326, 876
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpmI	CTGGAG	2 cut(s)	672, 780
BsaBI	GATNNNNATC	1 cut(s)	850
BsaJI	CCNNGG	4 cut(s)	123, 244, 413, 549
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 250, 418, 419, 903
Bse118I	RCCGGY	2 cut(s)	131, 605
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	3 cut(s)	290, 567, 972
Bse8I	GATNNNNATC	1 cut(s)	850
BseBI	CCWGG	4 cut(s)	82, 245, 651, 759
BseDI	CCNNGG	4 cut(s)	123, 244, 413, 549
BseGI	GGATG	4 cut(s)	317, 357, 863, 891
BseJI	GATNNNNATC	1 cut(s)	850
BseLI	CCNNNNNNNGG	5 cut(s)	87, 250, 418, 419, 903
BseMI	GCAATG	3 cut(s)	290, 567, 972
BseMII	CTCAG	2 cut(s)	220, 365
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	7 cut(s)	41, 87, 324, 327, 382, 441, 800
BseYI	CCCAGC	2 cut(s)	418, 743
BshFI	GGCC	2 cut(s)	5, 128
BshNI	GGYRCC	2 cut(s)	19, 94
BshTI	ACCGGT	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	1000
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	132, 606
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	5 cut(s)	87, 250, 418, 419, 903
BsmAI	GTCTC	1 cut(s)	955
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	5, 128
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	24, 1000
Bsp143I	GATC	4 cut(s)	248, 354, 845, 987
BspACI	CCGC	3 cut(s)	101, 129, 196
BspANI	GGCC	2 cut(s)	5, 128
BspCNI	CTCAG	2 cut(s)	219, 364
BspLI	GGNNCC	3 cut(s)	21, 96, 832
BspPI	GGATC	2 cut(s)	256, 982
BspQI	GCTCTTC	1 cut(s)	668
BspT107I	GGYRCC	2 cut(s)	19, 94
BsrDI	GCAATG	3 cut(s)	290, 567, 972
BsrFI	RCCGGY	2 cut(s)	131, 605
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	2 cut(s)	131, 605
BssECI	CCNNGG	4 cut(s)	123, 244, 413, 549
BssMI	GATC	4 cut(s)	248, 354, 845, 987
BssNAI	GTATAC	1 cut(s)	528
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	3 cut(s)	123, 413, 549
Bst1107I	GTATAC	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	4 cut(s)	82, 245, 651, 759
Bst4CI	ACNGT	3 cut(s)	173, 532, 685
Bst6I	CTCTTC	8 cut(s)	146, 163, 243, 257, 470, 668, 826, 881
BstC8I	GCNNGC	2 cut(s)	133, 963
BstDEI	CTNAG	3 cut(s)	13, 206, 351
BstF5I	GGATG	4 cut(s)	317, 357, 863, 891
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 317
BstKTI	GATC	4 cut(s)	251, 357, 848, 990
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	4 cut(s)	248, 354, 845, 987
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 404, 788
BstNI	CCWGG	4 cut(s)	82, 245, 651, 759
BstSCI	CCNGG	4 cut(s)	80, 243, 649, 757
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	41, 87, 324, 327, 382, 441, 800
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	5, 128
BtsCI	GGATG	4 cut(s)	317, 357, 863, 891
Cac8I	GCNNGC	2 cut(s)	133, 963
CfoI	GCGC	2 cut(s)	212, 317
Cfr10I	RCCGGY	2 cut(s)	131, 605
Csp6I	GTAC	1 cut(s)	174
CspAI	ACCGGT	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	698, 733
CviAII	CATG	2 cut(s)	294, 880
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	3 cut(s)	13, 206, 351
DpnI	GATC	4 cut(s)	250, 356, 847, 989
DpnII	GATC	4 cut(s)	248, 354, 845, 987
EaeI	YGGCCR	2 cut(s)	3, 126
Eam1104I	CTCTTC	8 cut(s)	146, 163, 243, 257, 470, 668, 826, 881
EarI	CTCTTC	8 cut(s)	146, 163, 243, 257, 470, 668, 826, 881
Eco130I	CCWWGG	3 cut(s)	123, 413, 549
Eco47III	AGCGCT	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	4 cut(s)	80, 243, 649, 757
EcoT14I	CCWWGG	3 cut(s)	123, 413, 549
ErhI	CCWWGG	3 cut(s)	123, 413, 549
FaeI	CATG	2 cut(s)	297, 883
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	293, 879
FblI	GTMKAC	2 cut(s)	527, 722
Fnu4HI	GCNGC	9 cut(s)	55, 76, 129, 196, 338, 341, 396, 455, 789
FokI	GGATG	4 cut(s)	304, 344, 870, 898
Fsp4HI	GCNGC	9 cut(s)	55, 76, 129, 196, 338, 341, 396, 455, 789
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	2 cut(s)	211, 316
GluI	GCNGC	9 cut(s)	55, 76, 129, 196, 338, 341, 396, 455, 789
GsaI	CCCAGC	2 cut(s)	422, 747
GsuI	CTGGAG	2 cut(s)	672, 780
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	5, 128
HapII	CCGG	2 cut(s)	132, 606
HhaI	GCGC	2 cut(s)	212, 317
Hin1II	CATG	2 cut(s)	297, 883
Hin6I	GCGC	2 cut(s)	210, 315
HinP1I	GCGC	2 cut(s)	210, 315
HinfI	GANTC	3 cut(s)	218, 290, 654
HpaII	CCGG	2 cut(s)	132, 606
HphI	GGTGA	2 cut(s)	224, 233
Hpy166II	GTNNAC	4 cut(s)	429, 528, 723, 906
Hpy188I	TCNGA	3 cut(s)	223, 354, 826
Hpy188III	TCNNGA	5 cut(s)	215, 361, 855, 923, 1010
Hpy8I	GTNNAC	4 cut(s)	429, 528, 723, 906
Hpy99I	CGWCG	2 cut(s)	152, 599
HpyAV	CCTTC	2 cut(s)	85, 821
HpyCH4III	ACNGT	3 cut(s)	173, 532, 685
HpyCH4V	TGCA	6 cut(s)	190, 343, 470, 502, 539, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 404, 788
HpyF3I	CTNAG	3 cut(s)	13, 206, 351
Hsp92II	CATG	2 cut(s)	297, 883
HspAI	GCGC	2 cut(s)	210, 315
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	248, 354, 845, 987
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	7 cut(s)	41, 87, 324, 327, 382, 441, 800
LweI	GCATC	2 cut(s)	326, 876
MaeI	CTAG	1 cut(s)	72
MalI	GATC	4 cut(s)	250, 356, 847, 989
MboI	GATC	4 cut(s)	248, 354, 845, 987
MhlI	GDGCHC	2 cut(s)	24, 1000
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	227, 663
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	2 cut(s)	596, 884
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	791, 947
MspI	CCGG	2 cut(s)	132, 606
MspR9I	CCNGG	4 cut(s)	82, 245, 651, 759
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	4 cut(s)	82, 245, 651, 759
MwoI	GCNNNNNNNGC	3 cut(s)	346, 404, 788
NaeI	GCCGGC	1 cut(s)	133
NdeII	GATC	4 cut(s)	248, 354, 845, 987
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	297, 883
NlaIV	GGNNCC	3 cut(s)	21, 96, 832
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	668
PctI	GAATGC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	649
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	9 cut(s)	56, 77, 130, 197, 339, 342, 397, 456, 790
PleI	GAGTC	2 cut(s)	226, 662
PpsI	GAGTC	2 cut(s)	226, 662
Psp6I	CCWGG	4 cut(s)	80, 243, 649, 757
PspFI	CCCAGC	2 cut(s)	418, 743
PspGI	CCWGG	4 cut(s)	80, 243, 649, 757
PspN4I	GGNNCC	3 cut(s)	21, 96, 832
PvuII	CAGCTG	2 cut(s)	791, 947
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	2 cut(s)	596, 884
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	9 cut(s)	55, 76, 129, 196, 338, 341, 396, 455, 789
Sau3AI	GATC	4 cut(s)	248, 354, 845, 987
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	227, 663
ScrFI	CCNGG	4 cut(s)	82, 245, 651, 759
SduI	GDGCHC	2 cut(s)	24, 1000
SfaNI	GCATC	2 cut(s)	326, 876
SfcI	CTRYAG	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	596, 884
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	3 cut(s)	101, 129, 196
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	4 cut(s)	80, 243, 649, 757
StyI	CCWWGG	3 cut(s)	123, 413, 549
TaaI	ACNGT	3 cut(s)	173, 532, 685
TaqI	TCGA	2 cut(s)	216, 805
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	2 cut(s)	131, 198
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	7 cut(s)	54, 75, 337, 340, 395, 454, 788
TspDTI	ATGAA	3 cut(s)	282, 450, 868
TspGWI	ACGGA	1 cut(s)	136
XapI	RAATTY	4 cut(s)	201, 619, 836, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	527, 722
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.