Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008532

Physical Location & Seq

Genomic Coordinates Forward (+)

5788358 .. 5789964

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGCAGACATTAATGGCGACAACTCGTCCGTACGTTCTTCTCTCTTCCACAAGAGCGAGTCTTTATCGCCTTTTTCAATCTTCAAAGAGACCCTTCGCTTCATTCTCAGCTCCTCTCGTGAGATTCACTAACTCGAGATGTGTAAGCGCCGTTTTGTCTCGTAAAGAGACTGCGCCGTCGTCGATTTACGGCAATAGAGTTTCTAGGGTTTCTGGGTTTGGTGCTTTGGACATTCGCAGCCTTAATTTCAGTACTAAATCCTCTCAAATCAATGATGCTGGTTCTATTGATCAAACCCTTATGCAATCCATGGAGCTAAAGATCAAAGAACAATTGAATGCAGAGTCGGTTACTGTAACGGATATGTCTGGAGATGGACGTCATGTCTGCATCAATGTGGTATCATCGGCTTTTGAGGGACAATCTGCAGTGAACAGACAAAGGATGGTCTACAAAGCCATTTGGGAAGAGCTTCAGAACGTTGTTCATGCCGTTGATCAAATGACAACAAAGACTCCTTCTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA

Protein Analysis

177

Amino Acids

19.54

Weight (kDa)

9.64

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17560 AT5G17560 AT5G17560
fragaria_vesca	FvH4_4g10840 FvH4_4g10840
malus_domestica	MD08G1049500.v1.1 MD15G1045100.v1.1
prunus_persica	Prupe.1G398900_v2.0.a1
pyrus_communis	pycom08g04140 pycom15g04190 pycom15g04220
rosa_chinensis	RchiOBHm_Chr4g0406641
rosa_laevigata	RLG00000008763
rosa_multiflora	Rmu_co8238271.1_g000001 Rmu_sc0002774.1_g000004
rosa_roxburghii	Rroxscaffold_5G00351480
rosa_rugosa	Rorug04G0072600 Rorug04G0072600
rosa_samantha	Rh4AG139800 Rh4BG136800 Rh4CG147000 Rh4DG134000
rosa_wichuraiana	Rw4G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AatII	GACGTC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	453
AclI	AACGTT	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	35, 256
AgsI	TTSAA	3 cut(s)	80, 87, 340
AhdI	GACNNNNNGTC	2 cut(s)	27, 386
AluBI	AGCT	3 cut(s)	113, 319, 475
AluI	AGCT	3 cut(s)	113, 319, 475
Alw26I	GTCTC	3 cut(s)	85, 164, 165
Ama87I	CYCGRG	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	240
AseI	ATTAAT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	3 cut(s)	7, 152, 178
AvaI	CYCGRG	1 cut(s)	136
BauI	CACGAG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	2 cut(s)	371, 442
BceAI	ACGGC	4 cut(s)	137, 163, 208, 479
BclI	TGATCA	2 cut(s)	292, 499
BcoDI	GTCTC	3 cut(s)	85, 164, 165
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
BmcAI	AGTACT	1 cut(s)	256
BmeRI	GACNNNNNGTC	2 cut(s)	27, 386
BmeT110I	CYCGRG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	268, 402
BpmI	CTGGAG	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	136
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	435
BsmAI	GTCTC	3 cut(s)	85, 164, 165
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	292, 324, 499
Bsp19I	CCATGG	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	433
BspQI	GCTCTTC	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	292, 324, 499
BssNI	GRCGYC	1 cut(s)	382
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	52, 465
BstACI	GRCGYC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	3 cut(s)	7, 152, 178
BstKTI	GATC	3 cut(s)	295, 327, 502
BstMAI	GTCTC	3 cut(s)	85, 164, 165
BstMBI	GATC	3 cut(s)	292, 324, 499
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
CfoI	GCGC	3 cut(s)	7, 152, 178
Csp6I	GTAC	2 cut(s)	34, 255
CviAII	CATG	3 cut(s)	313, 386, 491
CviJI	RGCY	6 cut(s)	113, 243, 319, 413, 461, 475
CviKI_1	RGCY	6 cut(s)	113, 243, 319, 413, 461, 475
CviQI	GTAC	2 cut(s)	34, 255
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	3 cut(s)	294, 326, 501
DpnII	GATC	3 cut(s)	292, 324, 499
DrdI	GACNNNNNNGTC	1 cut(s)	178
DriI	GACNNNNNGTC	2 cut(s)	27, 386
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	52, 465
Eam1105I	GACNNNNNGTC	2 cut(s)	27, 386
EarI	CTCTTC	2 cut(s)	52, 465
Eco130I	CCWWGG	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	316, 389, 494
FaiI	YATR	5 cut(s)	305, 314, 368, 387, 492
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	3 cut(s)	312, 385, 490
FbaI	TGATCA	2 cut(s)	292, 499
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	3 cut(s)	6, 151, 177
GluI	GCNGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	153
HhaI	GCGC	3 cut(s)	7, 152, 178
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	316, 389, 494
Hin6I	GCGC	3 cut(s)	5, 150, 176
HinP1I	GCGC	3 cut(s)	5, 150, 176
HinfI	GANTC	4 cut(s)	61, 126, 347, 517
Hpy166II	GTNNAC	2 cut(s)	436, 454
Hpy188I	TCNGA	2 cut(s)	480, 526
Hpy188III	TCNNGA	3 cut(s)	121, 138, 372
Hpy8I	GTNNAC	2 cut(s)	436, 454
Hpy99I	CGWCG	2 cut(s)	184, 187
HpyAV	CCTTC	2 cut(s)	106, 531
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	3 cut(s)	36, 382, 483
HpyCH4V	TGCA	4 cut(s)	307, 344, 393, 431
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	3 cut(s)	36, 382, 483
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	316, 389, 494
HspAI	GCGC	3 cut(s)	5, 150, 176
Ksp22I	TGATCA	2 cut(s)	292, 499
Kzo9I	GATC	3 cut(s)	292, 324, 499
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	118, 316
LpnPI	CCDG	3 cut(s)	201, 267, 357
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	2 cut(s)	268, 402
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	3 cut(s)	36, 382, 483
MaeIII	GTNAC	2 cut(s)	352, 358
MalI	GATC	3 cut(s)	294, 326, 501
MboI	GATC	3 cut(s)	292, 324, 499
MboII	GAAGA	4 cut(s)	32, 39, 75, 482
MfeI	CAATTG	1 cut(s)	335
MluCI	AATT	2 cut(s)	247, 335
MlyI	GAGTC	3 cut(s)	70, 356, 511
MnlI	CCTC	3 cut(s)	126, 274, 412
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	14, 246
MslI	CAYNNNNRTG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	292, 324, 499
NlaIII	CATG	3 cut(s)	316, 389, 494
PaeR7I	CTCGAG	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	465
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	126
Pfl23II	CGTACG	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	3 cut(s)	69, 355, 511
PpsI	GAGTC	3 cut(s)	69, 355, 511
PshBI	ATTAAT	1 cut(s)	14
Psp1406I	AACGTT	1 cut(s)	483
PspLI	CGTACG	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	35, 256
RsaNI	GTAC	2 cut(s)	34, 255
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	14, 246
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	3 cut(s)	292, 324, 499
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	3 cut(s)	70, 356, 511
SetI	ASST	6 cut(s)	39, 115, 321, 385, 477, 486
SfaNI	GCATC	2 cut(s)	268, 402
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	247, 335
SspMI	CTAG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	3 cut(s)	39, 385, 486
TaqI	TCGA	2 cut(s)	137, 185
TasI	AATT	2 cut(s)	247, 335
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	14, 246
Tru9I	TTAA	2 cut(s)	14, 246
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	93, 479
TspGWI	ACGGA	2 cut(s)	21, 377
TspRI	CASTG	1 cut(s)	438
VspI	ATTAAT	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	1 cut(s)	207
ZraI	GACGTC	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.