Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238271.1

Orthogroup ID

OG0008532

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 523

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggtggctgggatggtgatggtgcgtccgtatgtgtcagcctcaacgctaagtcgagctctgccatcagcagcctctgcactaagtcgagctctaccaaccttatttactgaaccaaggaataattggttagtgtgtgagactcagagcatgaaattgttaaatgatagagcaaccgccaacaaacacagaaactcaaggagactggtgtttggtggtgggaggaggttcactactcgagcttcccacgtcaatgatgctggctacattggctcgcctctcatgcagtccatggagaacaagatcaaggaacagctgaatgcagaatctgttattgttaaagatgctaacggggatggtcggcatgtcagcattgatgttgtctcttcatcctttgagggccaatctgctgtgaataggcagaggatggtgtacaaagccatatgggaggagcttcaaaacacagtgcatgcagtagatcagatgactactaaaaccccagatgaagcagcaacacaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA

Protein Analysis

174

Amino Acids

19.21

Weight (kDa)

9.77

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17560 AT5G17560 AT5G17560
fragaria_vesca	FvH4_4g10840 FvH4_4g10840
malus_domestica	MD08G1049500.v1.1 MD15G1045100.v1.1
prunus_persica	Prupe.1G398900_v2.0.a1
pyrus_communis	pycom08g04140 pycom15g04190 pycom15g04220
rosa_chinensis	RchiOBHm_Chr4g0406641
rosa_laevigata	RLG00000008763
rosa_multiflora	Rmu_co8238271.1_g000001 Rmu_sc0002774.1_g000004
rosa_roxburghii	Rroxscaffold_5G00351480
rosa_rugosa	Rorug04G0072600 Rorug04G0072600
rosa_samantha	Rh4AG139800 Rh4BG136800 Rh4CG147000 Rh4DG134000
rosa_wichuraiana	Rw4G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	458
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	5 cut(s)	59, 92, 242, 316, 454
AluI	AGCT	5 cut(s)	59, 92, 242, 316, 454
Alw21I	GWGCWC	2 cut(s)	61, 94
Alw26I	GTCTC	3 cut(s)	134, 196, 388
AlwNI	CAGNNNCTG	2 cut(s)	77, 329
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	71, 509
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	237
BanII	GRGCYC	2 cut(s)	61, 94
Bbv12I	GWGCWC	2 cut(s)	61, 94
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	5 cut(s)	7, 13, 73, 350, 421
BcoDI	GTCTC	3 cut(s)	134, 196, 388
BisI	GCNGC	2 cut(s)	72, 510
BlsI	GCNGC	2 cut(s)	73, 511
BmeT110I	CYCGRG	1 cut(s)	237
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	400
BmsI	GCATC	2 cut(s)	247, 334
BpuEI	CTTGAG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	116, 291
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	116, 291
BseGI	GGATG	4 cut(s)	18, 361, 389, 432
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	238, 464
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	402
BsiHKAI	GWGCWC	2 cut(s)	61, 94
BsiHKCI	CYCGRG	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	134, 196, 388
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	61, 94
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	303, 478
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	116, 291
BssMI	GATC	2 cut(s)	303, 478
BssT1I	CCWWGG	2 cut(s)	116, 291
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	262, 275, 471
BstDEI	CTNAG	3 cut(s)	50, 83, 144
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	18, 361, 389, 432
BstKTI	GATC	2 cut(s)	306, 481
BstMAI	GTCTC	3 cut(s)	134, 196, 388
BstMBI	GATC	2 cut(s)	303, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 270, 283
BstNSI	RCATGY	2 cut(s)	368, 473
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	18, 361, 389, 432
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	262, 275, 471
CaiI	CAGNNNCTG	2 cut(s)	77, 329
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	5 cut(s)	151, 283, 292, 365, 470
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	50, 83, 144
DpnI	GATC	2 cut(s)	305, 480
DpnII	GATC	2 cut(s)	303, 478
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Ecl136II	GAGCTC	2 cut(s)	59, 92
Eco130I	CCWWGG	2 cut(s)	116, 291
Eco24I	GRGCYC	2 cut(s)	61, 94
Eco53kI	GAGCTC	2 cut(s)	59, 92
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	2 cut(s)	59, 92
EcoT14I	CCWWGG	2 cut(s)	116, 291
EcoT38I	GRGCYC	2 cut(s)	61, 94
ErhI	CCWWGG	2 cut(s)	116, 291
FaeI	CATG	5 cut(s)	154, 286, 295, 368, 473
FaiI	YATR	8 cut(s)	33, 152, 284, 293, 366, 443, 445, 471
FatI	CATG	5 cut(s)	150, 282, 291, 364, 469
FauNDI	CATATG	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	72, 510
FokI	GGATG	4 cut(s)	25, 368, 376, 439
FriOI	GRGCYC	2 cut(s)	61, 94
Fsp4HI	GCNGC	2 cut(s)	72, 510
GluI	GCNGC	2 cut(s)	72, 510
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	402
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	154, 286, 295, 368, 473
HinfI	GANTC	2 cut(s)	142, 326
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	231, 433
Hpy188I	TCNGA	2 cut(s)	147, 483
Hpy8I	GTNNAC	2 cut(s)	231, 433
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	80, 286, 323, 469, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 270, 283
HpyF3I	CTNAG	3 cut(s)	50, 83, 144
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	154, 286, 295, 368, 473
Kzo9I	GATC	2 cut(s)	303, 478
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	3 cut(s)	191, 246, 513
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	247, 334
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	305, 480
MboI	GATC	2 cut(s)	303, 478
MboII	GAAGA	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	61, 94
MluCI	AATT	2 cut(s)	124, 155
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	8 cut(s)	52, 85, 216, 219, 288, 391, 417, 442
MseI	TTAA	2 cut(s)	161, 339
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	77, 270, 283
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	2 cut(s)	303, 478
NlaIII	CATG	5 cut(s)	154, 286, 295, 368, 473
NspI	RCATGY	2 cut(s)	368, 473
PaeI	GCATGC	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	237
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	73, 511
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp124BI	GAGCTC	2 cut(s)	61, 94
PspFI	CCCAGC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	237
PstNI	CAGNNNCTG	2 cut(s)	77, 329
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	2 cut(s)	61, 94
SaqAI	TTAA	2 cut(s)	161, 339
SatI	GCNGC	2 cut(s)	72, 510
Sau3AI	GATC	2 cut(s)	303, 478
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	61, 94
SetI	ASST	8 cut(s)	61, 94, 104, 230, 244, 252, 318, 456
SfaNI	GCATC	2 cut(s)	247, 334
Sfr274I	CTCGAG	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	196, 237
SmoI	CTYRAG	2 cut(s)	196, 237
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	2 cut(s)	124, 155
SsiI	CCGC	1 cut(s)	177
SstI	GAGCTC	2 cut(s)	61, 94
StyI	CCWWGG	2 cut(s)	116, 291
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	55, 88, 238
TasI	AATT	2 cut(s)	124, 155
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	161, 339
Tru9I	TTAA	2 cut(s)	161, 339
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	2 cut(s)	71, 509
TspDTI	ATGAA	3 cut(s)	167, 378, 519
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	471
XceI	RCATGY	2 cut(s)	368, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.