AT5G17690

Chromo domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007358
Physical Location & Seq
Reverse (-)
5827142 .. 5829763
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17690.2

Sequence Viewer

Length: 1338 bp
ATGAAAGGGGCAAGTGGTGCTGTTAAGAAGAAACCCCAGGTGTTGAACGAAGCTGGTGAGGCGGAGACGGCGGTGGAAACAGTCGGAGAAAGCCGGAAAATTAGTGGAGACGGTGGGTTTGGCAGTGACGACGGCGGAGGGGGAGGTGGAGGTGGAAGTGGAGAGTCGATTCTTCGCGAGATTGGTGATGATAGGCCTACGGAGGATGGAGATGAAGAAGAAGAAGAGGACGAGGATGAAGATGATGGAGGTGATGAGGAAGATGAAGAAGGAGAAGGAGAAGGTGGGCAAGAGGAAAGGCCAAAGCTTGATGAAGGGTTTTATGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAAGGCAAGGTTCAGTATCTAATTAAATGGCGCGGATGGCCTGAAACTGCCAACACATGGGAGCCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCCTTTGAGGGAAGTTTGAAGCCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAGAAGAAGCAACGTTTAACATCTACATCACATGATGCTACTGAGAAATCTGACTCTTCTACGTCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGTCTATTAAATAGAGATGTGGAAGCGAAGAATGCTTATGTATCCAACCAAGTTGAAGCCAACAGTGGGAGTGTTGGGATGGCCCGACAAGTTCGTTTGATTGACAATGAGAAAGAATATGATCCAACACTTAACGAGCTACGAGGACCAGTCAACAATAGTAACGGTGCAGGATGTTCTCAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTTTATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGTTCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTACAGATCAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGGAATGAATATCCTGGTGTGATGGAAAATTGTAATTTGTCTCAGAAAACCAAGATTGAGGAGTTGGACATCACGAAGATACTTAAACCAATGAGTTTTACAGCATCTGTATCAGACAATGTCCAGGAAGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGCATTGGTGGACAACAGATTTCTCAAGGCTCACAATCCTCATCTCCTGATTGAATTCTATGAGCAACATCTCAAGTACAATCGAACGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

445

Amino Acids

48.64

Weight (kDa)

5.04

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 108 - 156 2.1e-16 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 414
AccII CGCG 2 cut(s) 177, 390
AciI CCGC 6 cut(s) 62, 71, 135, 390, 651, 943
AclI AACGTT 1 cut(s) 550
AclWI GGATC 4 cut(s) 629, 773, 978, 991
AcsI RAATTY 1 cut(s) 1298
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 1 cut(s) 1322
AfeI AGCGCT 1 cut(s) 1224
AfiI CCNNNNNNNGG 3 cut(s) 414, 723, 892
AgsI TTSAA 6 cut(s) 46, 332, 478, 713, 973, 1298
AjnI CCWGG 5 cut(s) 36, 481, 490, 1087, 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 1232, 1264
AloI GAACNNNNNNTCC 2 cut(s) 940, 972
AluBI AGCT 5 cut(s) 53, 307, 335, 796, 910
AluI AGCT 5 cut(s) 53, 307, 335, 796, 910
Alw26I GTCTC 4 cut(s) 59, 102, 606, 1119
AlwI GGATC 4 cut(s) 629, 773, 978, 991
AlwNI CAGNNNCTG 2 cut(s) 1024, 1181
Aor51HI AGCGCT 1 cut(s) 1224
AoxI GGCC 5 cut(s) 194, 299, 395, 738, 883
ApoI RAATTY 1 cut(s) 1298
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 1018, 1050
Asp700I GAANNNNTTC 2 cut(s) 336, 968
AspLEI GCGC 3 cut(s) 390, 510, 1225
AspS9I GGNCC 3 cut(s) 521, 739, 803
AsuHPI GGTGA 5 cut(s) 68, 197, 263, 875, 1222
AsuII TTCGAA 1 cut(s) 355
AvaII GGWCC 2 cut(s) 521, 803
AxyI CCTNAGG 1 cut(s) 903
BamHI GGATCC 1 cut(s) 983
BbvCI CCTCAGC 1 cut(s) 1226
BccI CCATC 8 cut(s) 200, 239, 387, 730, 974, 1066, 1090, 1229
BceAI ACGGC 2 cut(s) 84, 148
BciT130I CCWGG 5 cut(s) 38, 483, 492, 1089, 1199
BciVI GTATCC 1 cut(s) 709
BcoDI GTCTC 4 cut(s) 59, 102, 606, 1119
BfaI CTAG 2 cut(s) 615, 641
BfmI CTRYAG 1 cut(s) 1011
BfoI RGCGCY 1 cut(s) 1226
BfuAI ACCTGC 1 cut(s) 509
BfuI GTATCC 1 cut(s) 709
BlpI GCTNAGC 1 cut(s) 939
Bme1390I CCNGG 5 cut(s) 38, 483, 492, 1089, 1199
Bme18I GGWCC 2 cut(s) 521, 803
BmgT120I GGNCC 3 cut(s) 521, 739, 803
BmiI GGNNCC 2 cut(s) 420, 985
BmrFI CCNGG 5 cut(s) 38, 483, 492, 1089, 1199
BmsI GCATC 3 cut(s) 448, 562, 1187
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 2 cut(s) 647, 1226
Bpu1102I GCTNAGC 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 4 cut(s) 822, 875, 1253, 1301
BsaBI GATNNNNATC 1 cut(s) 1020
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 3 cut(s) 414, 723, 892
Bse1I ACTGG 2 cut(s) 436, 806
Bse21I CCTNAGG 1 cut(s) 903
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 5 cut(s) 38, 483, 492, 1089, 1199
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 6 cut(s) 211, 241, 398, 741, 836, 1077
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 3 cut(s) 414, 723, 892
BseMII CTCAG 4 cut(s) 545, 570, 1130, 1217
BseNI ACTGG 2 cut(s) 436, 806
BseRI GAGGAG 2 cut(s) 858, 1148
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 2 cut(s) 177, 390
BshFI GGCC 5 cut(s) 196, 301, 397, 740, 885
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 414, 723, 892
BsmAI GTCTC 4 cut(s) 59, 102, 606, 1119
BsmBI CGTCTC 3 cut(s) 59, 102, 606
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 5 cut(s) 196, 301, 397, 740, 885
Bsp119I TTCGAA 1 cut(s) 355
Bsp143I GATC 4 cut(s) 634, 778, 983, 1015
Bsp1720I GCTNAGC 1 cut(s) 939
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 6 cut(s) 62, 71, 135, 390, 651, 943
BspANI GGCC 5 cut(s) 196, 301, 397, 740, 885
BspCNI CTCAG 4 cut(s) 544, 571, 1129, 1218
BspFNI CGCG 2 cut(s) 177, 390
BspLI GGNNCC 2 cut(s) 420, 985
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 4 cut(s) 629, 773, 978, 991
BspT104I TTCGAA 1 cut(s) 355
BsrI ACTGG 2 cut(s) 436, 806
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 634, 778, 983, 1015
Bst2UI CCWGG 5 cut(s) 38, 483, 492, 1089, 1199
Bst4CI ACNGT 5 cut(s) 82, 113, 722, 824, 923
Bst6I CTCTTC 2 cut(s) 219, 598
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 355
BstDEI CTNAG 7 cut(s) 531, 579, 647, 903, 939, 1116, 1226
BstEII GGTNACC 1 cut(s) 1210
BstENI CCTNNNNNAGG 1 cut(s) 890
BstF5I GGATG 6 cut(s) 211, 241, 398, 741, 836, 1077
BstFNI CGCG 2 cut(s) 177, 390
BstH2I RGCGCY 1 cut(s) 1226
BstHHI GCGC 3 cut(s) 390, 510, 1225
BstKTI GATC 4 cut(s) 637, 781, 986, 1018
BstMAI GTCTC 4 cut(s) 59, 102, 606, 1119
BstMBI GATC 4 cut(s) 634, 778, 983, 1015
BstMWI GCNNNNNNNGC 6 cut(s) 17, 59, 68, 394, 487, 689
BstNI CCWGG 5 cut(s) 38, 483, 492, 1089, 1199
BstPI GGTNACC 1 cut(s) 1210
BstSCI CCNGG 5 cut(s) 36, 481, 490, 1087, 1197
BstSFI CTRYAG 1 cut(s) 1011
BstUI CGCG 2 cut(s) 177, 390
BstX2I RGATCY 1 cut(s) 983
BstYI RGATCY 1 cut(s) 983
Bsu36I CCTNAGG 1 cut(s) 903
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 5 cut(s) 196, 301, 397, 740, 885
BtsCI GGATG 6 cut(s) 211, 241, 398, 741, 836, 1077
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 727
BtuMI TCGCGA 1 cut(s) 177
BveI ACCTGC 1 cut(s) 509
CaiI CAGNNNCTG 2 cut(s) 1024, 1181
CfoI GCGC 3 cut(s) 390, 510, 1225
Cfr13I GGNCC 3 cut(s) 521, 739, 803
Csp6I GTAC 1 cut(s) 1321
CviAII CATG 2 cut(s) 414, 569
CviQI GTAC 1 cut(s) 1321
DdeI CTNAG 7 cut(s) 531, 579, 647, 903, 939, 1116, 1226
DpnI GATC 4 cut(s) 636, 780, 985, 1017
DpnII GATC 4 cut(s) 634, 778, 983, 1015
Eam1104I CTCTTC 2 cut(s) 219, 598
EarI CTCTTC 2 cut(s) 219, 598
EciI GGCGGA 2 cut(s) 77, 150
Eco147I AGGCCT 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 521, 803
Eco47III AGCGCT 1 cut(s) 1224
Eco57I CTGAAG 1 cut(s) 879
Eco81I CCTNAGG 1 cut(s) 903
Eco91I GGTNACC 1 cut(s) 1210
EcoNI CCTNNNNNAGG 1 cut(s) 890
EcoO109I RGGNCCY 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 1298
EcoRII CCWGG 5 cut(s) 36, 481, 490, 1087, 1197
Esp3I CGTCTC 3 cut(s) 59, 102, 606
FaeI CATG 2 cut(s) 417, 572
FaiI YATR 9 cut(s) 324, 415, 455, 516, 570, 696, 777, 932, 1305
FatI CATG 2 cut(s) 413, 568
FokI GGATG 6 cut(s) 218, 248, 405, 748, 843, 1084
FspBI CTAG 2 cut(s) 615, 641
GlaI GCGC 3 cut(s) 389, 509, 1224
GsuI CTGGAG 1 cut(s) 419
HaeII RGCGCY 1 cut(s) 1226
HaeIII GGCC 5 cut(s) 196, 301, 397, 740, 885
HapII CCGG 1 cut(s) 94
HhaI GCGC 3 cut(s) 390, 510, 1225
Hin1II CATG 2 cut(s) 417, 572
Hin6I GCGC 3 cut(s) 388, 508, 1223
HinP1I GCGC 3 cut(s) 388, 508, 1223
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 8 cut(s) 164, 169, 430, 590, 658, 969, 1021, 1049
HpaII CCGG 1 cut(s) 94
HphI GGTGA 5 cut(s) 68, 197, 263, 875, 1222
Hpy166II GTNNAC 2 cut(s) 811, 1255
Hpy188I TCNGA 9 cut(s) 86, 534, 589, 859, 1020, 1026, 1119, 1189, 1234
Hpy188III TCNNGA 5 cut(s) 176, 623, 632, 1147, 1291
Hpy8I GTNNAC 2 cut(s) 811, 1255
Hpy99I CGWCG 2 cut(s) 134, 345
HpyAV CCTTC 8 cut(s) 263, 269, 275, 308, 629, 854, 896, 1234
HpyCH4III ACNGT 5 cut(s) 82, 113, 722, 824, 923
HpyCH4IV ACGT 2 cut(s) 550, 599
HpyCH4V TGCA 3 cut(s) 518, 827, 1067
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 59, 68, 394, 487, 689
HpyF3I CTNAG 7 cut(s) 531, 579, 647, 903, 939, 1116, 1226
HpySE526I ACGT 2 cut(s) 550, 599
Hsp92II CATG 2 cut(s) 417, 572
HspAI GCGC 3 cut(s) 388, 508, 1223
Kzo9I GATC 4 cut(s) 634, 778, 983, 1015
LmnI GCTCC 2 cut(s) 418, 907
LweI GCATC 3 cut(s) 448, 562, 1187
MaeI CTAG 2 cut(s) 615, 641
MaeII ACGT 2 cut(s) 550, 599
MaeIII GTNAC 4 cut(s) 125, 818, 992, 1210
MalI GATC 4 cut(s) 636, 780, 985, 1017
MboI GATC 4 cut(s) 634, 778, 983, 1015
MflI RGATCY 1 cut(s) 983
MluCI AATT 6 cut(s) 99, 327, 378, 1102, 1108, 1298
MlyI GAGTC 4 cut(s) 173, 584, 667, 1043
MmeI TCCRAC 4 cut(s) 64, 726, 806, 1119
MroXI GAANNNNTTC 2 cut(s) 336, 968
MseI TTAA 7 cut(s) 24, 381, 554, 665, 789, 1158, 1336
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 5 cut(s) 38, 483, 492, 1089, 1199
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 5 cut(s) 38, 483, 492, 1089, 1199
MvnI CGCG 2 cut(s) 177, 390
MwoI GCNNNNNNNGC 6 cut(s) 17, 59, 68, 394, 487, 689
NdeII GATC 4 cut(s) 634, 778, 983, 1015
NlaIII CATG 2 cut(s) 417, 572
NlaIV GGNNCC 2 cut(s) 420, 985
NmuCI GTSAC 2 cut(s) 125, 1210
NruI TCGCGA 1 cut(s) 177
NspV TTCGAA 1 cut(s) 355
PceI AGGCCT 1 cut(s) 196
PctI GAATGC 1 cut(s) 694
PdmI GAANNNNTTC 2 cut(s) 336, 968
PfeI GAWTC 4 cut(s) 169, 430, 969, 1021
PflFI GACNNNGTC 1 cut(s) 1193
PflMI CCANNNNNTGG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 1197
PleI GAGTC 4 cut(s) 172, 584, 666, 1043
PpsI GAGTC 4 cut(s) 172, 584, 666, 1043
PpuMI RGGWCCY 1 cut(s) 521
Psp1406I AACGTT 1 cut(s) 550
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 5 cut(s) 36, 481, 490, 1087, 1197
PspEI GGTNACC 1 cut(s) 1210
PspGI CCWGG 5 cut(s) 36, 481, 490, 1087, 1197
PspN4I GGNNCC 2 cut(s) 420, 985
PspPI GGNCC 3 cut(s) 521, 739, 803
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 2 cut(s) 1024, 1181
PsuI RGATCY 1 cut(s) 983
PsyI GACNNNGTC 1 cut(s) 1193
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 1 cut(s) 1322
RsaNI GTAC 1 cut(s) 1321
SaqAI TTAA 7 cut(s) 24, 381, 554, 665, 789, 1158, 1336
Sau3AI GATC 4 cut(s) 634, 778, 983, 1015
Sau96I GGNCC 3 cut(s) 521, 739, 803
SchI GAGTC 4 cut(s) 173, 584, 667, 1043
ScrFI CCNGG 5 cut(s) 38, 483, 492, 1089, 1199
SfaNI GCATC 3 cut(s) 448, 562, 1187
SfcI CTRYAG 1 cut(s) 1011
SfuI TTCGAA 1 cut(s) 355
SinI GGWCC 2 cut(s) 521, 803
SmlI CTYRAG 4 cut(s) 837, 890, 1268, 1316
SmoI CTYRAG 4 cut(s) 837, 890, 1268, 1316
Sse9I AATT 6 cut(s) 99, 327, 378, 1102, 1108, 1298
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 6 cut(s) 62, 71, 135, 390, 651, 943
SspMI CTAG 2 cut(s) 615, 641
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 5 cut(s) 36, 481, 490, 1087, 1197
TaaI ACNGT 5 cut(s) 82, 113, 722, 824, 923
TaiI ACGT 2 cut(s) 553, 602
TaqI TCGA 4 cut(s) 167, 355, 656, 1327
TasI AATT 6 cut(s) 99, 327, 378, 1102, 1108, 1298
TatI WGTACW 1 cut(s) 1320
TfiI GAWTC 4 cut(s) 169, 430, 969, 1021
Tru1I TTAA 7 cut(s) 24, 381, 554, 665, 789, 1158, 1336
Tru9I TTAA 7 cut(s) 24, 381, 554, 665, 789, 1158, 1336
TscAI CASTG 2 cut(s) 130, 727
TseFI GTSAC 2 cut(s) 125, 1210
Tsp45I GTSAC 2 cut(s) 125, 1210
TspDTI ATGAA 9 cut(s) 17, 228, 252, 279, 327, 339, 551, 919, 1095
TspGWI ACGGA 2 cut(s) 215, 517
TspRI CASTG 2 cut(s) 130, 727
Tth111I GACNNNGTC 1 cut(s) 1193
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 521, 803
XagI CCTNNNNNAGG 1 cut(s) 890
XapI RAATTY 1 cut(s) 1298
XmnI GAANNNNTTC 2 cut(s) 336, 968
XspI CTAG 2 cut(s) 615, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.