RchiOBHm_Chr4g0424951

Chromo domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007358
Physical Location & Seq
Forward (+)
50523457 .. 50524174
718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39419

Sequence Viewer

Length: 198 bp
ATGTTGGTGTTGTGCTTATGCGGGCGTGGGTGGCCAGAGATGGCCAATACATGGGAACCCTTGGAGAATCTCCTATCTGTCTCTGATGTTATAGAAGCATTTGAAAAAAGGTATTATTTTGTTTCTGTTTCTATTTTACGTTCCAGTTACTTCCAAGTCTTTATATTGCTAGTGTTGGCCTCTATAGATAGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

65

Amino Acids

7.46

Weight (kDa)

4.49

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 9 - 37 3.8e-06 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 1 cut(s) 21
AcoI YGGCCR 2 cut(s) 32, 42
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 85
AoxI GGCC 3 cut(s) 32, 42, 177
BalI TGGCCA 2 cut(s) 34, 44
BccI CCATC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 144
BshFI GGCC 3 cut(s) 34, 44, 179
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 3 cut(s) 34, 44, 179
BspACI CCGC 1 cut(s) 21
BspANI GGCC 3 cut(s) 34, 44, 179
BspLI GGNNCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 34, 44, 179
Cac8I GCNNGC 1 cut(s) 23
CviAII CATG 1 cut(s) 51
CviJI RGCY 3 cut(s) 34, 44, 179
CviKI_1 RGCY 3 cut(s) 34, 44, 179
EaeI YGGCCR 2 cut(s) 32, 42
Eco130I CCWWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 54
FaiI YATR 6 cut(s) 19, 52, 92, 164, 185, 196
FatI CATG 1 cut(s) 50
FauI CCCGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 170
HaeIII GGCC 3 cut(s) 34, 44, 179
Hin1II CATG 1 cut(s) 54
HinfI GANTC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 1 cut(s) 54
LpnPI CCDG 2 cut(s) 48, 157
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 146
MlsI TGGCCA 2 cut(s) 34, 44
MluNI TGGCCA 2 cut(s) 34, 44
MnlI CCTC 1 cut(s) 190
Mox20I TGGCCA 2 cut(s) 34, 44
MscI TGGCCA 2 cut(s) 34, 44
Msp20I TGGCCA 2 cut(s) 34, 44
MwoI GCNNNNNNNGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 57
SetI ASST 2 cut(s) 113, 142
SfcI CTRYAG 1 cut(s) 183
SgeI CNNG 8 cut(s) 34, 38, 47, 63, 73, 156, 167, 182
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 142
TfiI GAWTC 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 51
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.