RLG00000029043

Chromo domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007358
Physical Location & Seq
Forward (+)
31933070 .. 31937982
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029043

Sequence Viewer

Length: 1002 bp
ATGTTGCGAAACCTAGGGCGTGGCTGGCCAGAGACGGCCAATACATGGGAACCCTTGGAGAACCTCCAGTCTGTCTCTGATGTTATAGATGCATTTGAAGAAAGCTTGCGTACTGGAAAGCAACGGAAGCGAAAGCGCAAGTCTGGGACTCCTCATACTCAACCTAAGAAGAAGCAGCAGCAGCGTTCTACAGACACTACCTACAATGTGACAGATGGGGAAATAAGCAATGCTGATAAAGCTTTATCATCTAGTGCTTTCAATGGCTCAGGGGTTGATGTTCTTCCTCCCCCTCAACAGATTTTCCAGTCAGTTGGTGATGGGGAGGATAATGGGCGTGTCAACAATACTGAAACAGCAAAGAAAATTGATTCTGAGAACTTTTGTGCAAATGGTTCCCAACAAATTAGTGAAAGGAGAGAGGAAAATGAGTATGATCCAAAACTTAGTGAGCTCAAAGCAACAGGATCTACTAACACTGTCAGTTCAGATAAACTTTCTGTACATTTCCAAGAAGCCAAAGCTCCGGAAGTTAATGGCCCTACAAATGGTCTTTCCAAGGTTGATTGTGGAGAACCAGTGCAGGGCAGTCGCAGTACTGGAGCTAAGAGAAGGAAGTCTGGTTCTGTGAAGAGGTTTAAACAAGAAGCACAAGTGTCTGAACTGGGTGCTACACAAAATGCACCAACTCGAGTTAGCACGAGATATGCTGGTAGAGTTGATCAAACTGGGGTAGAAAATCTTGATTATGCTGGGGAAAATTCAGGTCGCAAGAATAAGATTGATGAATGCAAAGAAGCAGTGCGCATCACCAAGATTCTCAAGCCAATGGGCTATTCAACTTCGATATCAAACAATGTCCAGGACGTGTCCGTTACCTTTATGGCCATGAGGTCTGATGGCACAGAAGTGATAGTGGATAACAAATTTCTCAAGGTCAATCATCCACTTCTGCTGATTAATTTCTATGAGCAACATCTCCGGTACAGTCCTGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

334

Amino Acids

36.73

Weight (kDa)

8.78

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 806
AccB7I CCANNNNNTGG 1 cut(s) 45
AccIII TCCGGA 1 cut(s) 526
AclWI GGATC 2 cut(s) 431, 475
AcoI YGGCCR 3 cut(s) 26, 36, 885
AcsI RAATTY 2 cut(s) 760, 926
AfaI GTAC 4 cut(s) 112, 504, 598, 986
AfiI CCNNNNNNNGG 3 cut(s) 45, 548, 584
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 3 cut(s) 98, 262, 840
AjiI CACGTC 1 cut(s) 868
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AleI CACNNNNGTG 1 cut(s) 908
AloI GAACNNNNNNTCC 2 cut(s) 607, 639
AluBI AGCT 5 cut(s) 105, 242, 454, 524, 605
AluI AGCT 5 cut(s) 105, 242, 454, 524, 605
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 2 cut(s) 26, 79
AlwI GGATC 2 cut(s) 431, 475
Ama87I CYCGRG 1 cut(s) 690
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 4 cut(s) 26, 36, 538, 885
ApeKI GCWGC 3 cut(s) 175, 178, 181
ApoI RAATTY 2 cut(s) 760, 926
AseI ATTAAT 1 cut(s) 960
AspA2I CCTAGG 1 cut(s) 13
AspLEI GCGC 2 cut(s) 138, 807
AspS9I GGNCC 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 329, 802
AvaI CYCGRG 1 cut(s) 690
AvrII CCTAGG 1 cut(s) 13
BalI TGGCCA 2 cut(s) 28, 887
BanII GRGCYC 1 cut(s) 456
BauI CACGAG 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 187, 190, 193
BccI CCATC 3 cut(s) 209, 314, 893
BceAI ACGGC 2 cut(s) 51, 980
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 1 cut(s) 863
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 26, 79
BfaI CTAG 2 cut(s) 14, 252
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 3 cut(s) 176, 179, 182
BlnI CCTAGG 1 cut(s) 13
BlsI GCNGC 3 cut(s) 177, 180, 183
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 690
BmgBI CACGTC 1 cut(s) 868
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 2 cut(s) 51, 397
BmrFI CCNGG 1 cut(s) 863
BmrI ACTGGG 2 cut(s) 674, 738
BmsI GCATC 2 cut(s) 79, 816
BmuI ACTGGG 2 cut(s) 674, 738
BpmI CTGGAG 2 cut(s) 50, 621
Bpu10I CCTNAGC 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 806, 917
BsaJI CCNNGG 3 cut(s) 13, 54, 558
BsaWI WCCGGW 2 cut(s) 526, 981
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 548, 584
Bse1I ACTGG 7 cut(s) 67, 118, 307, 578, 604, 669, 733
Bse3DI GCAATG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 13, 54, 558
BseGI GGATG 1 cut(s) 943
BseLI CCNNNNNNNGG 3 cut(s) 45, 548, 584
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 282, 366
BseNI ACTGG 7 cut(s) 67, 118, 307, 578, 604, 669, 733
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 187, 190, 193
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 602
BshFI GGCC 4 cut(s) 28, 38, 540, 887
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 2 cut(s) 527, 982
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 3 cut(s) 45, 548, 584
BsmAI GTCTC 2 cut(s) 26, 79
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 4 cut(s) 28, 38, 540, 887
BsoBI CYCGRG 1 cut(s) 690
Bsp1286I GDGCHC 1 cut(s) 456
Bsp13I TCCGGA 1 cut(s) 526
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 3 cut(s) 436, 467, 721
BspANI GGCC 4 cut(s) 28, 38, 540, 887
BspCNI CTCAG 2 cut(s) 281, 367
BspEI TCCGGA 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 51, 397
BspPI GGATC 2 cut(s) 431, 475
BsrDI GCAATG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 7 cut(s) 67, 118, 307, 578, 604, 669, 733
BssECI CCNNGG 3 cut(s) 13, 54, 558
BssMI GATC 3 cut(s) 436, 467, 721
BssSI CACGAG 1 cut(s) 700
BssT1I CCWWGG 3 cut(s) 13, 54, 558
Bst2BI CACGAG 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 481, 989
Bst6I CTCTTC 1 cut(s) 626
BstAUI TGTACA 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 26, 107
BstDEI CTNAG 5 cut(s) 165, 268, 375, 446, 606
BstF5I GGATG 1 cut(s) 943
BstHHI GCGC 2 cut(s) 138, 807
BstKTI GATC 3 cut(s) 439, 470, 724
BstMAI GTCTC 2 cut(s) 26, 79
BstMBI GATC 3 cut(s) 436, 467, 721
BstMWI GCNNNNNNNGC 4 cut(s) 25, 127, 181, 239
BstNI CCWGG 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 187, 190, 193
BstX2I RGATCY 1 cut(s) 467
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 4 cut(s) 28, 38, 540, 887
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 1 cut(s) 943
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 3 cut(s) 477, 585, 807
Cac8I GCNNGC 2 cut(s) 26, 107
CfoI GCGC 2 cut(s) 138, 807
Cfr13I GGNCC 1 cut(s) 539
Csp6I GTAC 4 cut(s) 111, 503, 597, 985
CviAII CATG 2 cut(s) 45, 889
CviQI GTAC 4 cut(s) 111, 503, 597, 985
DdeI CTNAG 5 cut(s) 165, 268, 375, 446, 606
DpnI GATC 3 cut(s) 438, 469, 723
DpnII GATC 3 cut(s) 436, 467, 721
DraI TTTAAA 1 cut(s) 640
EaeI YGGCCR 3 cut(s) 26, 36, 885
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 13, 54, 558
Eco24I GRGCYC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 849
Eco53kI GAGCTC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 861
EcoRV GATATC 1 cut(s) 849
EcoT14I CCWWGG 3 cut(s) 13, 54, 558
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 3 cut(s) 13, 54, 558
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 2 cut(s) 48, 892
FaiI YATR 9 cut(s) 46, 86, 156, 435, 708, 750, 884, 890, 969
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 44, 888
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 176, 179, 182
FokI GGATG 1 cut(s) 930
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 3 cut(s) 176, 179, 182
FspAI RTGCGCAY 1 cut(s) 806
FspBI CTAG 2 cut(s) 14, 252
FspI TGCGCA 1 cut(s) 806
GlaI GCGC 2 cut(s) 137, 806
GluI GCNGC 3 cut(s) 176, 179, 182
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 2 cut(s) 50, 621
HaeIII GGCC 4 cut(s) 28, 38, 540, 887
HapII CCGG 2 cut(s) 527, 982
HhaI GCGC 2 cut(s) 138, 807
Hin1II CATG 2 cut(s) 48, 892
Hin6I GCGC 2 cut(s) 136, 805
HinP1I GCGC 2 cut(s) 136, 805
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 103, 240
HinfI GANTC 3 cut(s) 148, 371, 817
HpaII CCGG 2 cut(s) 527, 982
HphI GGTGA 2 cut(s) 329, 802
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 5 cut(s) 79, 376, 490, 661, 898
Hpy188III TCNNGA 2 cut(s) 527, 743
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 606
HpyCH4III ACNGT 2 cut(s) 481, 989
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 5 cut(s) 92, 389, 583, 683, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 127, 181, 239
HpyF3I CTNAG 5 cut(s) 165, 268, 375, 446, 606
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 2 cut(s) 48, 892
HspAI GCGC 2 cut(s) 136, 805
Kpn2I TCCGGA 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 3 cut(s) 436, 467, 721
LmnI GCTCC 2 cut(s) 529, 602
Lsp1109I GCAGC 3 cut(s) 187, 190, 193
LweI GCATC 2 cut(s) 79, 816
MaeI CTAG 2 cut(s) 14, 252
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 2 cut(s) 208, 874
MalI GATC 3 cut(s) 438, 469, 723
MboI GATC 3 cut(s) 436, 467, 721
MboII GAAGA 4 cut(s) 110, 181, 275, 643
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 456
MlsI TGGCCA 2 cut(s) 28, 887
MluCI AATT 5 cut(s) 366, 405, 760, 926, 961
MluNI TGGCCA 2 cut(s) 28, 887
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 8 cut(s) 74, 162, 297, 303, 319, 415, 627, 885
Mox20I TGGCCA 2 cut(s) 28, 887
Mph1103I ATGCAT 1 cut(s) 94
MroI TCCGGA 1 cut(s) 526
MscI TGGCCA 2 cut(s) 28, 887
MseI TTAA 3 cut(s) 534, 639, 960
MslI CAYNNNNRTG 1 cut(s) 908
Msp20I TGGCCA 2 cut(s) 28, 887
MspI CCGG 2 cut(s) 527, 982
MspR9I CCNGG 1 cut(s) 863
MssI GTTTAAAC 1 cut(s) 640
Mva1269I GAATGC 1 cut(s) 794
MvaI CCWGG 1 cut(s) 863
MwoI GCNNNNNNNGC 4 cut(s) 25, 127, 181, 239
NdeII GATC 3 cut(s) 436, 467, 721
NlaIII CATG 2 cut(s) 48, 892
NlaIV GGNNCC 2 cut(s) 51, 397
NmuCI GTSAC 1 cut(s) 208
NsbI TGCGCA 1 cut(s) 806
NsiI ATGCAT 1 cut(s) 94
OliI CACNNNNGTG 1 cut(s) 908
PaeR7I CTCGAG 1 cut(s) 690
PctI GAATGC 1 cut(s) 794
PfeI GAWTC 2 cut(s) 371, 817
PflMI CCANNNNNTGG 1 cut(s) 45
PfoI TCCNGGA 1 cut(s) 861
PkrI GCNGC 3 cut(s) 177, 180, 183
PleI GAGTC 1 cut(s) 142
PmeI GTTTAAAC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 142
PshBI ATTAAT 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 861
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 2 cut(s) 51, 397
PspPI GGNCC 1 cut(s) 539
PspXI VCTCGAGB 1 cut(s) 690
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 4 cut(s) 112, 504, 598, 986
RsaNI GTAC 4 cut(s) 111, 503, 597, 985
RseI CAYNNNNRTG 1 cut(s) 908
SacI GAGCTC 1 cut(s) 456
SaqAI TTAA 3 cut(s) 534, 639, 960
SatI GCNGC 3 cut(s) 176, 179, 182
Sau3AI GATC 3 cut(s) 436, 467, 721
Sau96I GGNCC 1 cut(s) 539
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 863
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 2 cut(s) 79, 816
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 690
SlaI CTCGAG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 3 cut(s) 690, 821, 932
SmoI CTYRAG 3 cut(s) 690, 821, 932
Sse9I AATT 5 cut(s) 366, 405, 760, 926, 961
SspMI CTAG 2 cut(s) 14, 252
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 3 cut(s) 13, 54, 558
TaaI ACNGT 2 cut(s) 481, 989
TaiI ACGT 1 cut(s) 870
TaqI TCGA 2 cut(s) 691, 845
TasI AATT 5 cut(s) 366, 405, 760, 926, 961
TatI WGTACW 2 cut(s) 502, 596
TfiI GAWTC 2 cut(s) 371, 817
Tru1I TTAA 3 cut(s) 534, 639, 960
Tru9I TTAA 3 cut(s) 534, 639, 960
TscAI CASTG 3 cut(s) 484, 585, 807
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 3 cut(s) 175, 178, 181
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 801
TspGWI ACGGA 2 cut(s) 139, 862
TspRI CASTG 3 cut(s) 484, 585, 807
Van91I CCANNNNNTGG 1 cut(s) 45
VspI ATTAAT 1 cut(s) 960
XapI RAATTY 2 cut(s) 760, 926
XhoI CTCGAG 1 cut(s) 690
XmaJI CCTAGG 1 cut(s) 13
XspI CTAG 2 cut(s) 14, 252
ZrmI AGTACT 1 cut(s) 598
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.