Rh1BG144400

Chromo domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007358
Physical Location & Seq
Reverse (-)
23837299 .. 23858993
21695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG144400.1

Sequence Viewer

Length: 924 bp
ATGAACAAATTTCCAGCAAATTTCTTGCGTACTGGAAAGCAACGGAAGCGAAAGCGCAAGTCTGGGACTCCTCATACTCAACCTAAGAAGAAGCAGCAGCAGCAGCGTTCTACAGACACTATCTACAATGTGACAGATGGGGAAATAAGCAATGCTGATAAAGCTTTATCATCTAGTGCTCTCAATGGCTCAGGGGTTGATGTTCTTCCTCCCCCTCAACAGATTTTCCAGTCAGTTGGTGATGGAGAGGATAATGGGCGTGTCAACAATACTGAAACAGCAAGGAAAATTGATTCTGAGAACTTTTGTGCAAATGGTTCCCAACAAATTAGTGAAAGGAGAGAGGAAAATGAGTATGATCCAAAACTTAGTGAGCTCAAAGCAACAGGATCTACTAACACTGTCAGTTCAGATAAACTTTCTGTACATTTCCAAGAAGCCAAAGCTCCGGAAGTTAATGGCCCTACAAATGGTCTTTCCAAGGTTGATTGTGGAGAACCAGTACAGGGCAGTCGCAGTACTGGAGCTAAGAGAAGGAAGTCTGGTTCTGTGAAGAGGTTTAAACAAGAAGCACAAGTGTCTGAACTGGGTGCTACACAAAATGCACCAACTCGAGTTAGCACGAGATATGCTGGTAGAGTTGATCAAACTGGGGTAGAAAATCTTGATTATGCTGGGGAAAATTCAGGTCGCAAGAATAAGATTGATGAATGCAAAGAAGCAGTGCGCATCACCAAGATTCTCAAGCCAATGGGCTATTCAACTTCGATATCAAACAATGTCCAGGACGTGTCCGTTACCTTTATGGCCATGAGGTCTGATGGCACAGAAGTGATAGTGGATAACAAATTTCTCAAGGTCAATCATCCACTTCTGCTGATTAATTTCTATGAGCAACATCTCCGGTACAGTCCTGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

307

Amino Acids

33.83

Weight (kDa)

9.41

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 728
AccIII TCCGGA 1 cut(s) 448
AclWI GGATC 2 cut(s) 353, 397
AcoI YGGCCR 1 cut(s) 807
AcsI RAATTY 4 cut(s) 8, 19, 682, 848
AfaI GTAC 5 cut(s) 31, 426, 504, 520, 908
AfiI CCNNNNNNNGG 2 cut(s) 470, 506
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 1 cut(s) 762
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
AleI CACNNNNGTG 1 cut(s) 830
AloI GAACNNNNNNTCC 2 cut(s) 529, 561
AluBI AGCT 4 cut(s) 164, 376, 446, 527
AluI AGCT 4 cut(s) 164, 376, 446, 527
Alw21I GWGCWC 2 cut(s) 181, 378
AlwI GGATC 2 cut(s) 353, 397
Ama87I CYCGRG 1 cut(s) 612
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 2 cut(s) 460, 807
ApeKI GCWGC 4 cut(s) 94, 97, 100, 103
ApoI RAATTY 4 cut(s) 8, 19, 682, 848
AseI ATTAAT 1 cut(s) 882
AspLEI GCGC 2 cut(s) 57, 729
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 251, 724
AvaI CYCGRG 1 cut(s) 612
BalI TGGCCA 1 cut(s) 809
BanII GRGCYC 1 cut(s) 378
BauI CACGAG 1 cut(s) 622
Bbv12I GWGCWC 2 cut(s) 181, 378
BbvI GCAGC 4 cut(s) 106, 109, 112, 115
BccI CCATC 3 cut(s) 131, 236, 815
BciT130I CCWGG 1 cut(s) 785
BclI TGATCA 1 cut(s) 643
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 4 cut(s) 95, 98, 101, 104
BlsI GCNGC 4 cut(s) 96, 99, 102, 105
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 785
BmeT110I CYCGRG 1 cut(s) 612
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 785
BmrI ACTGGG 2 cut(s) 596, 660
BmsI GCATC 1 cut(s) 738
BmuI ACTGGG 2 cut(s) 596, 660
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 190
BpuEI CTTGAG 2 cut(s) 728, 839
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 2 cut(s) 448, 903
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 506
Bse1I ACTGG 6 cut(s) 37, 229, 500, 526, 591, 655
Bse3DI GCAATG 1 cut(s) 157
BseAI TCCGGA 1 cut(s) 448
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 2 cut(s) 470, 506
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 204, 288
BseNI ACTGG 6 cut(s) 37, 229, 500, 526, 591, 655
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 106, 109, 112, 115
BseYI CCCAGC 1 cut(s) 674
BshFI GGCC 2 cut(s) 462, 809
BsiHKAI GWGCWC 2 cut(s) 181, 378
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 449, 904
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 470, 506
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 2 cut(s) 462, 809
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 181, 378
Bsp13I TCCGGA 1 cut(s) 448
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 358, 389, 643
BspANI GGCC 2 cut(s) 462, 809
BspCNI CTCAG 2 cut(s) 203, 289
BspEI TCCGGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 2 cut(s) 353, 397
BsrDI GCAATG 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 6 cut(s) 37, 229, 500, 526, 591, 655
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 3 cut(s) 358, 389, 643
BssSI CACGAG 1 cut(s) 622
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 622
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 403, 911
Bst6I CTCTTC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 424
BstDEI CTNAG 5 cut(s) 84, 190, 297, 368, 528
BstF5I GGATG 1 cut(s) 865
BstHHI GCGC 2 cut(s) 57, 729
BstKTI GATC 3 cut(s) 361, 392, 646
BstMBI GATC 3 cut(s) 358, 389, 643
BstMWI GCNNNNNNNGC 4 cut(s) 46, 100, 103, 161
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 106, 109, 112, 115
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 2 cut(s) 462, 809
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 1 cut(s) 865
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 399, 729
CfoI GCGC 2 cut(s) 57, 729
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 5 cut(s) 30, 425, 503, 519, 907
CviAII CATG 1 cut(s) 811
CviQI GTAC 5 cut(s) 30, 425, 503, 519, 907
DdeI CTNAG 5 cut(s) 84, 190, 297, 368, 528
DpnI GATC 3 cut(s) 360, 391, 645
DpnII GATC 3 cut(s) 358, 389, 643
DraI TTTAAA 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 771
Eco53kI GAGCTC 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 783
EcoRV GATATC 1 cut(s) 771
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 1 cut(s) 814
FaiI YATR 7 cut(s) 75, 357, 630, 672, 806, 812, 891
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 810
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 4 cut(s) 95, 98, 101, 104
FokI GGATG 1 cut(s) 852
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 4 cut(s) 95, 98, 101, 104
FspAI RTGCGCAY 1 cut(s) 728
FspBI CTAG 1 cut(s) 174
FspI TGCGCA 1 cut(s) 728
GlaI GCGC 2 cut(s) 56, 728
GluI GCNGC 4 cut(s) 95, 98, 101, 104
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 462, 809
HapII CCGG 2 cut(s) 449, 904
HhaI GCGC 2 cut(s) 57, 729
Hin1II CATG 1 cut(s) 814
Hin6I GCGC 2 cut(s) 55, 727
HinP1I GCGC 2 cut(s) 55, 727
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 3 cut(s) 67, 293, 739
HpaII CCGG 2 cut(s) 449, 904
HphI GGTGA 2 cut(s) 251, 724
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 4 cut(s) 298, 412, 583, 820
Hpy188III TCNNGA 2 cut(s) 449, 665
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 528
HpyCH4III ACNGT 2 cut(s) 403, 911
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 3 cut(s) 311, 605, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 100, 103, 161
HpyF3I CTNAG 5 cut(s) 84, 190, 297, 368, 528
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 1 cut(s) 814
HspAI GCGC 2 cut(s) 55, 727
Kpn2I TCCGGA 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 3 cut(s) 358, 389, 643
LmnI GCTCC 2 cut(s) 451, 524
Lsp1109I GCAGC 4 cut(s) 106, 109, 112, 115
LweI GCATC 1 cut(s) 738
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 130, 796
MalI GATC 3 cut(s) 360, 391, 645
MboI GATC 3 cut(s) 358, 389, 643
MboII GAAGA 3 cut(s) 100, 197, 565
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 2 cut(s) 181, 378
MlsI TGGCCA 1 cut(s) 809
MluCI AATT 7 cut(s) 8, 19, 288, 327, 682, 848, 883
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 7 cut(s) 81, 219, 225, 241, 337, 549, 807
Mox20I TGGCCA 1 cut(s) 809
MroI TCCGGA 1 cut(s) 448
MscI TGGCCA 1 cut(s) 809
MseI TTAA 3 cut(s) 456, 561, 882
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 809
MspI CCGG 2 cut(s) 449, 904
MspR9I CCNGG 1 cut(s) 785
MssI GTTTAAAC 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 1 cut(s) 785
MwoI GCNNNNNNNGC 4 cut(s) 46, 100, 103, 161
NdeII GATC 3 cut(s) 358, 389, 643
NlaIII CATG 1 cut(s) 814
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 130
NsbI TGCGCA 1 cut(s) 728
OliI CACNNNNGTG 1 cut(s) 830
PaeR7I CTCGAG 1 cut(s) 612
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 2 cut(s) 293, 739
PfoI TCCNGGA 1 cut(s) 783
PkrI GCNGC 4 cut(s) 96, 99, 102, 105
PleI GAGTC 1 cut(s) 61
PmeI GTTTAAAC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 882
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 461
PspXI VCTCGAGB 1 cut(s) 612
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 5 cut(s) 31, 426, 504, 520, 908
RsaNI GTAC 5 cut(s) 30, 425, 503, 519, 907
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 3 cut(s) 456, 561, 882
SatI GCNGC 4 cut(s) 95, 98, 101, 104
Sau3AI GATC 3 cut(s) 358, 389, 643
Sau96I GGNCC 1 cut(s) 461
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 2 cut(s) 181, 378
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 612
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 612, 743, 854
SmoI CTYRAG 3 cut(s) 612, 743, 854
Sse9I AATT 7 cut(s) 8, 19, 288, 327, 682, 848, 883
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 403, 911
TaiI ACGT 1 cut(s) 792
TaqI TCGA 2 cut(s) 613, 767
TasI AATT 7 cut(s) 8, 19, 288, 327, 682, 848, 883
TatI WGTACW 3 cut(s) 424, 502, 518
TfiI GAWTC 2 cut(s) 293, 739
Tru1I TTAA 3 cut(s) 456, 561, 882
Tru9I TTAA 3 cut(s) 456, 561, 882
TscAI CASTG 2 cut(s) 406, 729
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 94, 97, 100, 103
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 17, 723
TspGWI ACGGA 2 cut(s) 58, 784
TspRI CASTG 2 cut(s) 406, 729
VspI ATTAAT 1 cut(s) 882
XapI RAATTY 4 cut(s) 8, 19, 682, 848
XhoI CTCGAG 1 cut(s) 612
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.