Rh1DG176200

Chromo domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007358
Physical Location & Seq
Reverse (-)
36004635 .. 36028700
24066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG176200.1

Sequence Viewer

Length: 912 bp
ATGAGGCAGTTCTTGCGTACTGGAAAGCAACGGAAGCGAAAGCGCAAGTCTGGGACTCCTCATACTCAACCTAAGAAGAAGCAGCAGCAGCAGCGTTCTACAGACACTATCTACAATGTGACAGATGGGGAAATAAGCAATGCTGATAAAGCTTTATCATCTAGTGCTCTCAATGGCTCAGGGGTTGATGTTCTTCCTCCCCCTCAACAGATTTTCCAGTCAGTTGGTGATGGAGAGGATAATGGGCGTGTCAACAATACTGAAACAGCAAGGAAAATTGATTCTGAGAACTTTTGTGCAAATGGTTCCCAACAAATTAGTGAAAGGAGAGAGGAAAATGAGTATGATCCAAAACTTAGTGAGCTCAAAGCAACAGGATCTACTAACACTGTCAGTTCAGATAAACTTTCTGTACATTTCCAAGAAGCCAAAGCTCCGGAAGTTAATGGCCCTACAAATGGTCTTTCCAAGGTTGATTGTGGAGAACCAGTACAGGGCAGTCGCAGTACTGGAGCTAAGAGAAGGAAGTCTGGTTCTGTGAAGAGGTTTAAACAAGAAGCACAAGTGTCTGAACTGGGTGCTACACAAAATGCACCAACTCGAGTTAGCACGAGATATGCTGGTAGAGTTGATCAAACTGGGGTAGAAAATCTTGATTATGCTGGGGAAAATTCAGGTCGCAAGAATAAGATTGATGAATGCAAAGAAGCAGTGCGCATCACCAAGATTCTCAAGCCAATGGGCTATTCAACTTCGATATCAAACAATGTCCAGGACGTGTCCGTTACCTTTATGGCCATGAGGTCTGATGGCACAGAAGTGATAGTGGATAACAAATTTCTCAAGGTCAATCATCCACTTCTGCTGATTAATTTCTATGAGCAACATCTCCGGTACAGTCCTGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

303

Amino Acids

33.44

Weight (kDa)

9.43

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 716
AccIII TCCGGA 1 cut(s) 436
AclWI GGATC 2 cut(s) 341, 385
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 2 cut(s) 670, 836
AfaI GTAC 5 cut(s) 19, 414, 492, 508, 896
AfiI CCNNNNNNNGG 2 cut(s) 458, 494
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 1 cut(s) 750
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 1 cut(s) 771
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AleI CACNNNNGTG 1 cut(s) 818
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 4 cut(s) 152, 364, 434, 515
AluI AGCT 4 cut(s) 152, 364, 434, 515
Alw21I GWGCWC 2 cut(s) 169, 366
AlwI GGATC 2 cut(s) 341, 385
Ama87I CYCGRG 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 2 cut(s) 448, 795
ApeKI GCWGC 4 cut(s) 82, 85, 88, 91
ApoI RAATTY 2 cut(s) 670, 836
AseI ATTAAT 1 cut(s) 870
AspLEI GCGC 2 cut(s) 45, 717
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 239, 712
AvaI CYCGRG 1 cut(s) 600
BalI TGGCCA 1 cut(s) 797
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 169, 366
BbvI GCAGC 4 cut(s) 94, 97, 100, 103
BccI CCATC 3 cut(s) 119, 224, 803
BciT130I CCWGG 1 cut(s) 773
BclI TGATCA 1 cut(s) 631
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 4 cut(s) 83, 86, 89, 92
BlsI GCNGC 4 cut(s) 84, 87, 90, 93
BmcAI AGTACT 1 cut(s) 508
Bme1390I CCNGG 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 773
BmrI ACTGGG 2 cut(s) 584, 648
BmsI GCATC 1 cut(s) 726
BmuI ACTGGG 2 cut(s) 584, 648
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 2 cut(s) 716, 827
BsaJI CCNNGG 1 cut(s) 468
BsaWI WCCGGW 2 cut(s) 436, 891
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 494
Bse1I ACTGG 6 cut(s) 25, 217, 488, 514, 579, 643
Bse3DI GCAATG 1 cut(s) 145
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 2 cut(s) 458, 494
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 192, 276
BseNI ACTGG 6 cut(s) 25, 217, 488, 514, 579, 643
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 94, 97, 100, 103
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 2 cut(s) 450, 797
BsiHKAI GWGCWC 2 cut(s) 169, 366
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 2 cut(s) 437, 892
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 458, 494
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 2 cut(s) 450, 797
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 2 cut(s) 169, 366
Bsp13I TCCGGA 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 3 cut(s) 346, 377, 631
BspANI GGCC 2 cut(s) 450, 797
BspCNI CTCAG 2 cut(s) 191, 277
BspEI TCCGGA 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 2 cut(s) 341, 385
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 6 cut(s) 25, 217, 488, 514, 579, 643
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 3 cut(s) 346, 377, 631
BssSI CACGAG 1 cut(s) 610
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 610
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 2 cut(s) 391, 899
Bst6I CTCTTC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 412
BstDEI CTNAG 5 cut(s) 72, 178, 285, 356, 516
BstF5I GGATG 1 cut(s) 853
BstHHI GCGC 2 cut(s) 45, 717
BstKTI GATC 3 cut(s) 349, 380, 634
BstMBI GATC 3 cut(s) 346, 377, 631
BstMWI GCNNNNNNNGC 5 cut(s) 13, 34, 88, 91, 149
BstNI CCWGG 1 cut(s) 773
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 94, 97, 100, 103
BstX2I RGATCY 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 224
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 450, 797
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 1 cut(s) 853
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 387, 717
CfoI GCGC 2 cut(s) 45, 717
Cfr13I GGNCC 1 cut(s) 449
Csp6I GTAC 5 cut(s) 18, 413, 491, 507, 895
CviAII CATG 1 cut(s) 799
CviQI GTAC 5 cut(s) 18, 413, 491, 507, 895
DdeI CTNAG 5 cut(s) 72, 178, 285, 356, 516
DpnI GATC 3 cut(s) 348, 379, 633
DpnII GATC 3 cut(s) 346, 377, 631
DraI TTTAAA 1 cut(s) 550
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 771
EcoRV GATATC 1 cut(s) 759
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 1 cut(s) 802
FaiI YATR 7 cut(s) 63, 345, 618, 660, 794, 800, 879
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 798
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 4 cut(s) 83, 86, 89, 92
FokI GGATG 1 cut(s) 840
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 83, 86, 89, 92
FspAI RTGCGCAY 1 cut(s) 716
FspBI CTAG 1 cut(s) 162
FspI TGCGCA 1 cut(s) 716
GlaI GCGC 2 cut(s) 44, 716
GluI GCNGC 4 cut(s) 83, 86, 89, 92
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 450, 797
HapII CCGG 2 cut(s) 437, 892
HhaI GCGC 2 cut(s) 45, 717
Hin1II CATG 1 cut(s) 802
Hin6I GCGC 2 cut(s) 43, 715
HinP1I GCGC 2 cut(s) 43, 715
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 55, 281, 727
HpaII CCGG 2 cut(s) 437, 892
HphI GGTGA 2 cut(s) 239, 712
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 4 cut(s) 286, 400, 571, 808
Hpy188III TCNNGA 2 cut(s) 437, 653
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 2 cut(s) 391, 899
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 3 cut(s) 299, 593, 702
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 34, 88, 91, 149
HpyF3I CTNAG 5 cut(s) 72, 178, 285, 356, 516
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 1 cut(s) 802
HspAI GCGC 2 cut(s) 43, 715
Kpn2I TCCGGA 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 346, 377, 631
LmnI GCTCC 2 cut(s) 439, 512
Lsp1109I GCAGC 4 cut(s) 94, 97, 100, 103
LweI GCATC 1 cut(s) 726
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 2 cut(s) 118, 784
MalI GATC 3 cut(s) 348, 379, 633
MboI GATC 3 cut(s) 346, 377, 631
MboII GAAGA 3 cut(s) 88, 185, 553
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 169, 366
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 5 cut(s) 276, 315, 670, 836, 871
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 7 cut(s) 69, 207, 213, 229, 325, 537, 795
Mox20I TGGCCA 1 cut(s) 797
MroI TCCGGA 1 cut(s) 436
MscI TGGCCA 1 cut(s) 797
MseI TTAA 3 cut(s) 444, 549, 870
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 797
MspI CCGG 2 cut(s) 437, 892
MspR9I CCNGG 1 cut(s) 773
MssI GTTTAAAC 1 cut(s) 550
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 1 cut(s) 773
MwoI GCNNNNNNNGC 5 cut(s) 13, 34, 88, 91, 149
NdeII GATC 3 cut(s) 346, 377, 631
NlaIII CATG 1 cut(s) 802
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 118
NsbI TGCGCA 1 cut(s) 716
OliI CACNNNNGTG 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 600
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 281, 727
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 4 cut(s) 84, 87, 90, 93
PleI GAGTC 1 cut(s) 49
PmeI GTTTAAAC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 870
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 771
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 449
PspXI VCTCGAGB 1 cut(s) 600
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 5 cut(s) 19, 414, 492, 508, 896
RsaNI GTAC 5 cut(s) 18, 413, 491, 507, 895
RseI CAYNNNNRTG 1 cut(s) 818
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 444, 549, 870
SatI GCNGC 4 cut(s) 83, 86, 89, 92
Sau3AI GATC 3 cut(s) 346, 377, 631
Sau96I GGNCC 1 cut(s) 449
ScaI AGTACT 1 cut(s) 508
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 2 cut(s) 169, 366
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 1 cut(s) 99
Sfr274I CTCGAG 1 cut(s) 600
SlaI CTCGAG 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 3 cut(s) 600, 731, 842
SmoI CTYRAG 3 cut(s) 600, 731, 842
Sse9I AATT 5 cut(s) 276, 315, 670, 836, 871
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 771
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 391, 899
TaiI ACGT 1 cut(s) 780
TaqI TCGA 2 cut(s) 601, 755
TasI AATT 5 cut(s) 276, 315, 670, 836, 871
TatI WGTACW 3 cut(s) 412, 490, 506
TfiI GAWTC 2 cut(s) 281, 727
Tru1I TTAA 3 cut(s) 444, 549, 870
Tru9I TTAA 3 cut(s) 444, 549, 870
TscAI CASTG 2 cut(s) 394, 717
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 4 cut(s) 82, 85, 88, 91
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 711
TspGWI ACGGA 2 cut(s) 46, 772
TspRI CASTG 2 cut(s) 394, 717
VspI ATTAAT 1 cut(s) 870
XapI RAATTY 2 cut(s) 670, 836
XhoI CTCGAG 1 cut(s) 600
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.