Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007358

Physical Location & Seq

Genomic Coordinates Reverse (-)

18128959 .. 18131559

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACAGATGTGGAAATCGGCATCGTGGATAAAGCTCTGTCCTCCACTGCTCTCAACTGCTCGAAACTTATTGGTCTTTCTCCCCCTCAACAGCCAGTGGTTTTAGCTCGTGACGGAGAGAATGATGGGCATGTCAACAATATTGAAGCAACCAAGAAAGTTAATGCTGAGAATGGCTGTTCAAATACTTCTCAACAAAATGGTGGAAGGAGAGAGGAAAATGAGGATGATCCAAAGCTTAGTGAGCTCAGAGCAACAACGTTTACTAATGTTGTCAATTGGGATAAAGTTTCTGTACCTTTCCAAGAAGCAAAGGCTCCAGAAGTTAATGGCCCTACAGATGGTCTTTCCAAGGTTGATTGTGCAGAACCAGTACAGAGCAATCGCAGCACTGGAGCTAAGAGAAGGAAGTCCAGTTCTGTGAAGAGGTTTAAACAAGAGTCACAAGTGTCCGAACTGGGTGCTACACCAAATGCAACAACCAGAGTCAGTGTTAGATATGGTGGTAGAGGTAGTCAATCAGGGGCAGAAAATCTTGATTATGCTGGGGGAAATTCAAGTCGCAGGAATAAGATTGATGAATCCAGAAATGCAATACGTATCACCAAGATAATAAAGCCAATAGGATACTCAACTTCAGTGTCAAACGACATCCAGGATGTGTTAGTCACCTTTAAGGCAATGAGGTCCGACGGATCTGAAGTGATAGTGGACAACAAGTCTCTCAAGGTTAATCATCCGCTTCTGTTGATCGATTTTTACGAGCAACATCTCCGATACAGTCCTACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

265

Amino Acids

28.78

Weight (kDa)

8.35

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17690 AT5G17690 AT5G17690
fragaria_vesca	FvH4_7g08280 FvH4_7g08280 FvH4_7g08280 FvH4_7g08280
malus_domestica	MD02G1231000.v1.1 MD07G1081800.v1.1
prunus_persica	Prupe.2G107000_v2.0.a1 Prupe.2G107000_v2.0.a1
pyrus_communis	pycom02g20010 pycom07g06510
rosa_chinensis	RchiOBHm_Chr1g0340791 RchiOBHm_Chr4g0424951
rosa_laevigata	RLG00000029043
rosa_multiflora	Rmu_co8307041.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311470
rosa_rugosa	Rorug01G0161300.1
rosa_samantha	Rh1AG176600 Rh1BG144400 Rh1CG164100 Rh1DG176200
rosa_wichuraiana	Rw1G014590 Rw1G014630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	740
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	2 cut(s)	224, 703
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	621, 720
AfaI	GTAC	2 cut(s)	297, 375
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	146, 183, 558
AhdI	GACNNNNNGTC	1 cut(s)	718
AjnI	CCWGG	1 cut(s)	654
AloI	GAACNNNNNNTCC	2 cut(s)	400, 432
AluBI	AGCT	5 cut(s)	35, 107, 238, 247, 398
AluI	AGCT	5 cut(s)	35, 107, 238, 247, 398
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	2 cut(s)	224, 703
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	332, 687
AsuHPI	GGTGA	2 cut(s)	595, 661
AvaII	GGWCC	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	2 cut(s)	119, 335
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	726
BfmI	CTRYAG	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	687
BmeRI	GACNNNNNGTC	1 cut(s)	718
BmgT120I	GGNCC	2 cut(s)	332, 687
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	656
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	467
BpmI	CTGGAG	2 cut(s)	303, 414
BpuEI	CTTGAG	1 cut(s)	710
Bsa29I	ATCGAT	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	5 cut(s)	95, 371, 397, 414, 462
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	656
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	4 cut(s)	232, 651, 664, 736
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	159, 262
BseNI	ACTGG	5 cut(s)	95, 371, 397, 414, 462
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	333
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	726
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	229, 695, 750
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	160, 261
BspDI	ATCGAT	1 cut(s)	753
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	224, 703
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	5 cut(s)	95, 371, 397, 414, 462
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	229, 695, 750
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	782
Bst6I	CTCTTC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	599
BstDEI	CTNAG	4 cut(s)	168, 239, 248, 399
BstF5I	GGATG	4 cut(s)	232, 651, 664, 736
BstKTI	GATC	3 cut(s)	232, 698, 753
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	3 cut(s)	229, 695, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 387
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	654
BstSFI	CTRYAG	1 cut(s)	336
BstSNI	TACGTA	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	753
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	232, 651, 664, 736
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	5 cut(s)	45, 102, 390, 496, 645
Cfr13I	GGNCC	2 cut(s)	332, 687
ClaI	ATCGAT	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	296, 374
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	2 cut(s)	296, 374
DdeI	CTNAG	4 cut(s)	168, 239, 248, 399
DpnI	GATC	3 cut(s)	231, 697, 752
DpnII	GATC	3 cut(s)	229, 695, 750
DraI	TTTAAA	1 cut(s)	433
DriI	GACNNNNNGTC	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	419
Eam1105I	GACNNNNNGTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	621, 720
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	134
FaiI	YATR	3 cut(s)	132, 501, 543
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	4 cut(s)	239, 638, 671, 723
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	388
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	303, 414
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	440, 486, 581
HphI	GGTGA	2 cut(s)	595, 661
Hpy166II	GTNNAC	3 cut(s)	136, 264, 712
Hpy188I	TCNGA	5 cut(s)	251, 454, 691, 700, 776
Hpy188III	TCNNGA	4 cut(s)	110, 320, 536, 585
Hpy8I	GTNNAC	3 cut(s)	136, 264, 712
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	2 cut(s)	201, 399
HpyCH4III	ACNGT	1 cut(s)	782
HpyCH4IV	ACGT	2 cut(s)	260, 598
HpyCH4V	TGCA	3 cut(s)	365, 476, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 387
HpyF3I	CTNAG	4 cut(s)	168, 239, 248, 399
HpySE526I	ACGT	2 cut(s)	260, 598
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	229, 695, 750
LmnI	GCTCC	2 cut(s)	322, 395
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	2 cut(s)	260, 598
MaeIII	GTNAC	3 cut(s)	110, 441, 667
MalI	GATC	3 cut(s)	231, 697, 752
MboI	GATC	3 cut(s)	229, 695, 750
MboII	GAAGA	1 cut(s)	436
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	277, 553
MlyI	GAGTC	2 cut(s)	449, 495
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	7 cut(s)	52, 96, 208, 217, 420, 503, 678
MseI	TTAA	6 cut(s)	162, 327, 432, 675, 732, 793
MspR9I	CCNGG	1 cut(s)	656
MssI	GTTTAAAC	1 cut(s)	433
MunI	CAATTG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	244, 387
NdeII	GATC	3 cut(s)	229, 695, 750
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	3 cut(s)	110, 441, 667
NspI	RCATGY	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	2 cut(s)	448, 494
PmeI	GTTTAAAC	1 cut(s)	433
PpsI	GAGTC	2 cut(s)	448, 494
Ppu21I	YACGTR	1 cut(s)	599
Psp124BI	GAGCTC	1 cut(s)	249
Psp1406I	AACGTT	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	654
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	332, 687
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	2 cut(s)	297, 375
RsaNI	GTAC	2 cut(s)	296, 374
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	6 cut(s)	162, 327, 432, 675, 732, 793
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	3 cut(s)	229, 695, 750
Sau96I	GGNCC	2 cut(s)	332, 687
SchI	GAGTC	2 cut(s)	449, 495
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SnaBI	TACGTA	1 cut(s)	599
Sse9I	AATT	2 cut(s)	277, 553
SsiI	CCGC	1 cut(s)	740
SspI	AATATT	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	654
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	782
TaiI	ACGT	2 cut(s)	263, 601
TaqI	TCGA	2 cut(s)	62, 753
TasI	AATT	2 cut(s)	277, 553
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	6 cut(s)	162, 327, 432, 675, 732, 793
Tru9I	TTAA	6 cut(s)	162, 327, 432, 675, 732, 793
TscAI	CASTG	5 cut(s)	52, 102, 397, 496, 645
TseFI	GTSAC	3 cut(s)	110, 441, 667
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	3 cut(s)	110, 441, 667
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	2 cut(s)	129, 708
TspRI	CASTG	5 cut(s)	52, 102, 397, 496, 645
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.