MD02G1231000.v1.1

Chromo domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0007358
Physical Location & Seq
Reverse (-)
27692499 .. 27696981
4483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1231000.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGAGAACCAAGGTAGGAAGAAGGGAGATTTGGGACAACAATTGGAAGGATGCAATGCCTGCTGCCGGTGCTGTTCTTGTTCGGGACGCCGGCAACAACCACCCCGACGCCCCTTTTGCTCTTCACCAACAGCAAGCTTCTGCCGCCGCTCAAGAGCAAGAGCATCAGGAGGAACCTCAAGCTACCCAAGAAGATGGCGATGGCGACGGAGACGGCGAAGCTGAAGAGGACGCTGACGATGAGGGAGGTGGCGACGGGGACGGTGAGGCTGGCGCTGATGACGAAAATAGAGAGCGTAACAAGCTTGATGACGGCTTCTACGAAATCGAAGCGATTCGCCGGAAAAGGGTTCGAAAGGGTCAGCTCCAGTACCTCATCAAATGGCGCGGTTGGCCAGAGACTGCCAATACATGGGAACCCTTAGATAATCTCCAGTCAATTGCTGATGTTGTTGAGGCCTTTGAAGAAAGCTTGCGAACTGGTAAGCATCGGAAGCGCAAGAGAAAGCAAGGGACTCCTCTTTCTCAACCCAAGAAGAGGCAGCAGCGTTCTAGTGATCCTATTCCTATCTACAATATGACAGATGTGGAAATCGGCATCGTGGATAAAGCTCTGTCCTCCACTGCTCTCAACTGCTCGAAACTTGTTGGTCTTCCTCCCCCTCAACAGCCAGTGGTTTTAGCTCGTGACGGAGAGAATGATGGGCATGTCAACAATATTGAAGCAACCAAGAAAGTTAATGCTGAGAATGGCTGTTCAAATACTTCTCAACAAAATGGTGGAAGGAGAGAGGAAAATGAGGATGATCCAAAGCTTAGTGAGCTCAGAGCAACAACATTTACTAATGTTGTCAATTGGGATAAAGTTTCTGTACCTTTCCAAGAAGCAAAGGCTCCAGAAGTTAATGGCCCTACAGATGGTCTTTCCAAGGTTGATTGTGCAGAACCAGTACAGAGCAATCGCAGCACTGGAGCTAAGAGAAGGAAGTCCAGTTCTGTGAAGAGGTTTAAACAAGAGTCACAAGTGTCCGAACTGGGTGCTACACCAAATGCAACAACCAGAGTCAGTGTTAGATATGGCGGTAGAGGTAGTCAATCAGGGGCAGAAAATCTTGATTATGCTGGGGGAAATTCAAGTCGCAGGAATAAGATTGATGAATCCAGAAATGCAGTACGTATCACCAAGATAATAAAGCCAATAGGATACTCAACTTCAGTGTCAAACGACGTCCAGGATGTGTTAGTCACCTTTAAGGCAATGAGGTCCGATGGATCTGAAGTGATAGTGGACAACAAGTCTCTCAAGGTTAATCATCCGCTTCTGTTGATCGATTTTTACGAGCAACATCTCCGATACAATCCTACATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

457

Amino Acids

50.43

Weight (kDa)

5.54

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 107 - 156 7.3e-16 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1230
AccB7I CCANNNNNTGG 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 149
AccII CGCG 1 cut(s) 387
AciI CCGC 5 cut(s) 144, 147, 387, 1080, 1316
AclWI GGATC 3 cut(s) 551, 800, 1279
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 1 cut(s) 1129
AcuI CTGAAG 3 cut(s) 243, 1197, 1296
AcyI GRCGYC 3 cut(s) 87, 108, 1227
AfaI GTAC 4 cut(s) 371, 873, 951, 1173
AfiI CCNNNNNNNGG 5 cut(s) 65, 346, 411, 537, 917
AgsI TTSAA 4 cut(s) 464, 722, 759, 1134
AhdI GACNNNNNGTC 1 cut(s) 1294
AjnI CCWGG 1 cut(s) 1230
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AloI GAACNNNNNNTCC 2 cut(s) 976, 1008
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 3 cut(s) 204, 392, 1302
AlwI GGATC 3 cut(s) 551, 800, 1279
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 3 cut(s) 392, 456, 907
ApeKI GCWGC 4 cut(s) 62, 541, 544, 963
ApoI RAATTY 1 cut(s) 1129
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 3 cut(s) 275, 387, 498
AspS9I GGNCC 2 cut(s) 908, 1263
AsuHPI GGTGA 4 cut(s) 116, 275, 1171, 1237
AsuII TTCGAA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 1263
BalI TGGCCA 1 cut(s) 394
BanII GRGCYC 1 cut(s) 825
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 4 cut(s) 49, 553, 556, 975
BccI CCATC 5 cut(s) 188, 194, 695, 911, 1262
BceAI ACGGC 2 cut(s) 229, 328
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 1 cut(s) 1232
BciVI GTATCC 1 cut(s) 1196
BcoDI GTCTC 3 cut(s) 204, 392, 1302
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 276
BfuI GTATCC 1 cut(s) 1196
BisI GCNGC 6 cut(s) 63, 144, 147, 542, 545, 964
BlsI GCNGC 6 cut(s) 64, 145, 148, 543, 546, 965
Bme1390I CCNGG 1 cut(s) 1232
Bme18I GGWCC 1 cut(s) 1263
BmeRI GACNNNNNGTC 1 cut(s) 1294
BmgT120I GGNCC 2 cut(s) 908, 1263
BmiI GGNNCC 3 cut(s) 174, 417, 894
BmrFI CCNGG 1 cut(s) 1232
BmrI ACTGGG 1 cut(s) 1043
BmsI GCATC 4 cut(s) 40, 172, 496, 606
BmuI ACTGGG 1 cut(s) 1043
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 4 cut(s) 350, 416, 879, 990
Bpu14I TTCGAA 1 cut(s) 352
BpuEI CTTGAG 3 cut(s) 135, 162, 1286
Bsa29I ATCGAT 1 cut(s) 1329
BsaAI YACGTR 1 cut(s) 1175
BsaHI GRCGYC 3 cut(s) 87, 108, 1227
BsaJI CCNNGG 2 cut(s) 9, 927
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 346, 411, 537, 917
Bse118I RCCGGY 2 cut(s) 65, 89
Bse1I ACTGG 8 cut(s) 367, 433, 484, 671, 947, 973, 990, 1038
Bse3DI GCAATG 2 cut(s) 60, 1263
BseBI CCWGG 1 cut(s) 1232
BseCI ATCGAT 1 cut(s) 1329
BseDI CCNNGG 2 cut(s) 9, 927
BseGI GGATG 4 cut(s) 55, 808, 1240, 1312
BseLI CCNNNNNNNGG 5 cut(s) 65, 346, 411, 537, 917
BseMI GCAATG 2 cut(s) 60, 1263
BseMII CTCAG 2 cut(s) 735, 838
BseNI ACTGG 8 cut(s) 367, 433, 484, 671, 947, 973, 990, 1038
BseRI GAGGAG 1 cut(s) 507
BseXI GCAGC 4 cut(s) 49, 553, 556, 975
BseYI CCCAGC 1 cut(s) 1121
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 394, 458, 909
BshVI ATCGAT 1 cut(s) 1329
BsiHKAI GWGCWC 1 cut(s) 825
BsiSI CCGG 3 cut(s) 66, 90, 340
BslFI GGGAC 4 cut(s) 47, 98, 272, 526
BslI CCNNNNNNNGG 5 cut(s) 65, 346, 411, 537, 917
BsmAI GTCTC 3 cut(s) 204, 392, 1302
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 4 cut(s) 47, 98, 272, 526
BsnI GGCC 3 cut(s) 394, 458, 909
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 4 cut(s) 556, 805, 1271, 1326
BspACI CCGC 5 cut(s) 144, 147, 387, 1080, 1316
BspANI GGCC 3 cut(s) 394, 458, 909
BspCNI CTCAG 2 cut(s) 736, 837
BspDI ATCGAT 1 cut(s) 1329
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 174, 417, 894
BspPI GGATC 3 cut(s) 551, 800, 1279
BspQI GCTCTTC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 352
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 60, 1263
BsrFI RCCGGY 2 cut(s) 65, 89
BsrI ACTGG 8 cut(s) 367, 433, 484, 671, 947, 973, 990, 1038
BssAI RCCGGY 2 cut(s) 65, 89
BssECI CCNNGG 2 cut(s) 9, 927
BssMI GATC 4 cut(s) 556, 805, 1271, 1326
BssNI GRCGYC 3 cut(s) 87, 108, 1227
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 2 cut(s) 9, 927
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 1232
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 4 cut(s) 126, 219, 530, 995
BstACI GRCGYC 3 cut(s) 87, 108, 1227
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 1175
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 5 cut(s) 60, 91, 135, 271, 473
BstDEI CTNAG 5 cut(s) 421, 744, 815, 824, 975
BstF5I GGATG 4 cut(s) 55, 808, 1240, 1312
BstFNI CGCG 1 cut(s) 387
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 3 cut(s) 275, 387, 498
BstKTI GATC 4 cut(s) 559, 808, 1274, 1329
BstMAI GTCTC 3 cut(s) 204, 392, 1302
BstMBI GATC 4 cut(s) 556, 805, 1271, 1326
BstMWI GCNNNNNNNGC 9 cut(s) 59, 68, 116, 143, 301, 391, 493, 820, 963
BstNI CCWGG 1 cut(s) 1232
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 1230
BstSFI CTRYAG 1 cut(s) 912
BstSNI TACGTA 1 cut(s) 1175
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 4 cut(s) 49, 553, 556, 975
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 1271
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 1271
Bsu15I ATCGAT 1 cut(s) 1329
BsuI GTATCC 1 cut(s) 1196
BsuRI GGCC 3 cut(s) 394, 458, 909
BsuTUI ATCGAT 1 cut(s) 1329
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 4 cut(s) 55, 808, 1240, 1312
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 5 cut(s) 621, 678, 966, 1072, 1221
Cac8I GCNNGC 5 cut(s) 60, 91, 135, 271, 473
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 3 cut(s) 275, 387, 498
Cfr10I RCCGGY 2 cut(s) 65, 89
Cfr13I GGNCC 2 cut(s) 908, 1263
ClaI ATCGAT 1 cut(s) 1329
CseI GACGC 3 cut(s) 95, 116, 239
Csp6I GTAC 4 cut(s) 370, 872, 950, 1172
CviAII CATG 2 cut(s) 411, 707
CviQI GTAC 4 cut(s) 370, 872, 950, 1172
DdeI CTNAG 5 cut(s) 421, 744, 815, 824, 975
DpnI GATC 4 cut(s) 558, 807, 1273, 1328
DpnII GATC 4 cut(s) 556, 805, 1271, 1326
DraI TTTAAA 1 cut(s) 1009
DriI GACNNNNNGTC 1 cut(s) 1294
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 4 cut(s) 126, 219, 530, 995
Eam1105I GACNNNNNGTC 1 cut(s) 1294
EarI CTCTTC 4 cut(s) 126, 219, 530, 995
Ecl136II GAGCTC 1 cut(s) 823
Eco105I TACGTA 1 cut(s) 1175
Eco130I CCWWGG 2 cut(s) 9, 927
Eco147I AGGCCT 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 1263
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 3 cut(s) 243, 1197, 1296
EcoICRI GAGCTC 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 1230
EcoT14I CCWWGG 2 cut(s) 9, 927
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 2 cut(s) 9, 927
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 414, 710
FaiI YATR 5 cut(s) 412, 578, 708, 1077, 1119
FaqI GGGAC 4 cut(s) 47, 98, 272, 526
FatI CATG 2 cut(s) 410, 706
Fnu4HI GCNGC 6 cut(s) 63, 144, 147, 542, 545, 964
FokI GGATG 4 cut(s) 62, 815, 1247, 1299
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 6 cut(s) 63, 144, 147, 542, 545, 964
FspBI CTAG 1 cut(s) 552
GlaI GCGC 3 cut(s) 274, 386, 497
GluI GCNGC 6 cut(s) 63, 144, 147, 542, 545, 964
GsaI CCCAGC 1 cut(s) 1125
GsuI CTGGAG 4 cut(s) 350, 416, 879, 990
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 3 cut(s) 394, 458, 909
HapII CCGG 3 cut(s) 66, 90, 340
HgaI GACGC 3 cut(s) 95, 116, 239
HhaI GCGC 3 cut(s) 275, 387, 498
Hin1I GRCGYC 3 cut(s) 87, 108, 1227
Hin1II CATG 2 cut(s) 414, 710
Hin6I GCGC 3 cut(s) 273, 385, 496
HinP1I GCGC 3 cut(s) 273, 385, 496
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 4 cut(s) 135, 302, 469, 812
HinfI GANTC 5 cut(s) 334, 514, 1016, 1062, 1157
HpaII CCGG 3 cut(s) 66, 90, 340
HphI GGTGA 4 cut(s) 116, 275, 1171, 1237
Hpy166II GTNNAC 2 cut(s) 712, 1288
Hpy188I TCNGA 6 cut(s) 492, 827, 1030, 1267, 1276, 1352
Hpy188III TCNNGA 7 cut(s) 83, 152, 167, 686, 896, 1112, 1161
Hpy8I GTNNAC 2 cut(s) 712, 1288
Hpy99I CGWCG 4 cut(s) 110, 209, 257, 1229
HpyAV CCTTC 4 cut(s) 15, 40, 777, 975
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 2 cut(s) 1174, 1227
HpyCH4V TGCA 4 cut(s) 53, 941, 1052, 1169
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 68, 116, 143, 301, 391, 493, 820, 963
HpyF3I CTNAG 5 cut(s) 421, 744, 815, 824, 975
HpySE526I ACGT 2 cut(s) 1174, 1227
Hsp92I GRCGYC 3 cut(s) 87, 108, 1227
Hsp92II CATG 2 cut(s) 414, 710
HspAI GCGC 3 cut(s) 273, 385, 496
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 556, 805, 1271, 1326
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 3 cut(s) 369, 898, 971
Lsp1109I GCAGC 4 cut(s) 49, 553, 556, 975
LweI GCATC 4 cut(s) 40, 172, 496, 606
MaeI CTAG 1 cut(s) 552
MaeII ACGT 2 cut(s) 1174, 1227
MaeIII GTNAC 4 cut(s) 296, 686, 1017, 1243
MalI GATC 4 cut(s) 558, 807, 1273, 1328
MbiI CCGCTC 1 cut(s) 149
MboI GATC 4 cut(s) 556, 805, 1271, 1326
MboII GAAGA 8 cut(s) 30, 113, 203, 236, 476, 547, 644, 1012
MfeI CAATTG 3 cut(s) 40, 438, 853
MflI RGATCY 1 cut(s) 1271
MhlI GDGCHC 1 cut(s) 825
MlsI TGGCCA 1 cut(s) 394
MluCI AATT 4 cut(s) 40, 438, 853, 1129
MluNI TGGCCA 1 cut(s) 394
MlyI GAGTC 3 cut(s) 508, 1025, 1071
Mox20I TGGCCA 1 cut(s) 394
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 394
MseI TTAA 6 cut(s) 738, 903, 1008, 1251, 1308, 1369
Msp20I TGGCCA 1 cut(s) 394
MspI CCGG 3 cut(s) 66, 90, 340
MspR9I CCNGG 1 cut(s) 1232
MssI GTTTAAAC 1 cut(s) 1009
MunI CAATTG 3 cut(s) 40, 438, 853
MvaI CCWGG 1 cut(s) 1232
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 9 cut(s) 59, 68, 116, 143, 301, 391, 493, 820, 963
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 4 cut(s) 556, 805, 1271, 1326
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 2 cut(s) 414, 710
NlaIV GGNNCC 3 cut(s) 174, 417, 894
NmuCI GTSAC 3 cut(s) 686, 1017, 1243
NspI RCATGY 1 cut(s) 710
NspV TTCGAA 1 cut(s) 352
PceI AGGCCT 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 3 cut(s) 213, 318, 1335
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 334, 1157
PflMI CCANNNNNTGG 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 1230
PkrI GCNGC 6 cut(s) 64, 145, 148, 543, 546, 965
PleI GAGTC 3 cut(s) 508, 1024, 1070
PmeI GTTTAAAC 1 cut(s) 1009
PpsI GAGTC 3 cut(s) 508, 1024, 1070
Ppu21I YACGTR 1 cut(s) 1175
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 1230
PspFI CCCAGC 1 cut(s) 1121
PspGI CCWGG 1 cut(s) 1230
PspN4I GGNNCC 3 cut(s) 174, 417, 894
PspPI GGNCC 2 cut(s) 908, 1263
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 1 cut(s) 1271
RsaI GTAC 4 cut(s) 371, 873, 951, 1173
RsaNI GTAC 4 cut(s) 370, 872, 950, 1172
SacI GAGCTC 1 cut(s) 825
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 6 cut(s) 738, 903, 1008, 1251, 1308, 1369
SatI GCNGC 6 cut(s) 63, 144, 147, 542, 545, 964
Sau3AI GATC 4 cut(s) 556, 805, 1271, 1326
Sau96I GGNCC 2 cut(s) 908, 1263
SchI GAGTC 3 cut(s) 508, 1025, 1071
ScrFI CCNGG 1 cut(s) 1232
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 4 cut(s) 40, 172, 496, 606
SfcI CTRYAG 1 cut(s) 912
SfuI TTCGAA 1 cut(s) 352
SinI GGWCC 1 cut(s) 1263
SmlI CTYRAG 3 cut(s) 150, 177, 1301
SmoI CTYRAG 3 cut(s) 150, 177, 1301
SnaBI TACGTA 1 cut(s) 1175
Sse9I AATT 4 cut(s) 40, 438, 853, 1129
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 5 cut(s) 144, 147, 387, 1080, 1316
SspI AATATT 1 cut(s) 718
SspMI CTAG 1 cut(s) 552
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 1230
StyI CCWWGG 2 cut(s) 9, 927
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 2 cut(s) 1177, 1230
TaqI TCGA 4 cut(s) 327, 352, 638, 1329
TasI AATT 4 cut(s) 40, 438, 853, 1129
TatI WGTACW 1 cut(s) 949
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 2 cut(s) 334, 1157
Tru1I TTAA 6 cut(s) 738, 903, 1008, 1251, 1308, 1369
Tru9I TTAA 6 cut(s) 738, 903, 1008, 1251, 1308, 1369
TscAI CASTG 5 cut(s) 628, 678, 973, 1072, 1221
TseFI GTSAC 3 cut(s) 686, 1017, 1243
TseI GCWGC 4 cut(s) 62, 541, 544, 963
Tsp45I GTSAC 3 cut(s) 686, 1017, 1243
TspDTI ATGAA 1 cut(s) 1170
TspGWI ACGGA 2 cut(s) 222, 705
TspRI CASTG 5 cut(s) 628, 678, 973, 1072, 1221
Van91I CCANNNNNTGG 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 1263
XapI RAATTY 1 cut(s) 1129
XceI RCATGY 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 1 cut(s) 552
ZraI GACGTC 1 cut(s) 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.