Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307041.1

Orthogroup ID

OG0007358

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 910

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307041.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

cttgcgtactggaaagcaacggaagcgaaagcgcaagtctgggactcctcatactcaacctaagaagaagcagcagcagcagcagcgttctacagacactacctacaatgtgacagatggggaaataagcaatgctgataaagctttatcatctagtgctctcaatggctcaggggttgatgttcttcctccccctcaacagattttccagtcagttggtgatggagaggataatgggcgtgtcaacaatactgaaacagcaaagaaaattgattctgagaacttttgtgcaaatggttcccaacaaattagtgaaaggagagaggaaaatgagtatgatccaaaacttagtgagctcaaagcaacaggatctactaacactgtcagttcagataaactctctgtacatttccaagaagccaaagctccggaagttaatggccctacaaatggtctttccaaggttgattgtggagaaccagtacagggcagtcgcagtactggagctaagagaaggaagtctggttctgtgaagaggtttaaacaagaagcacaagtgtctgaactgggtgctacacaaaatgccccaactcgagttagcacgagatatgctggtagagttgatcaaactggggtagaaaatcttgattatgctggggaaaattcaggtcgcaagaataagattgatgaatgcaaagaagcagtgcgtatcaccaagattctcaagccaatgggctattcaacttcgatatcaaacaatgtccaggacgtgtccgttacctttatggccatgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0003933 GO:0003935 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010048 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016458 GO:0016787 GO:0016810 GO:0016814 GO:0019219 GO:0019222 GO:0019238 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035064 GO:0040007 GO:0040029 GO:0040030 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

264

Amino Acids

28.76

Weight (kDa)

9.4

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17690 AT5G17690 AT5G17690
fragaria_vesca	FvH4_7g08280 FvH4_7g08280 FvH4_7g08280 FvH4_7g08280
malus_domestica	MD02G1231000.v1.1 MD07G1081800.v1.1
prunus_persica	Prupe.2G107000_v2.0.a1 Prupe.2G107000_v2.0.a1
pyrus_communis	pycom02g20010 pycom07g06510
rosa_chinensis	RchiOBHm_Chr1g0340791 RchiOBHm_Chr4g0424951
rosa_laevigata	RLG00000029043
rosa_multiflora	Rmu_co8307041.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311470
rosa_rugosa	Rorug01G0161300.1
rosa_samantha	Rh1AG176600 Rh1BG144400 Rh1CG164100 Rh1DG176200
rosa_wichuraiana	Rw1G014590 Rw1G014630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	428
AclWI	GGATC	2 cut(s)	333, 377
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	1 cut(s)	662
AfaI	GTAC	4 cut(s)	8, 406, 484, 500
AfiI	CCNNNNNNNGG	2 cut(s)	450, 486
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	1 cut(s)	742
AjiI	CACGTC	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	763
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	144, 356, 426, 507
AluI	AGCT	4 cut(s)	144, 356, 426, 507
Alw21I	GWGCWC	2 cut(s)	161, 358
AlwI	GGATC	2 cut(s)	333, 377
Ama87I	CYCGRG	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	428
AoxI	GGCC	2 cut(s)	440, 787
ApeKI	GCWGC	5 cut(s)	71, 74, 77, 80, 83
ApoI	RAATTY	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	231, 704
AvaI	CYCGRG	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	602
Bbv12I	GWGCWC	2 cut(s)	161, 358
BbvI	GCAGC	5 cut(s)	83, 86, 89, 92, 95
BccI	CCATC	2 cut(s)	111, 216
BciT130I	CCWGG	1 cut(s)	765
BclI	TGATCA	1 cut(s)	623
BfaI	CTAG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	5 cut(s)	72, 75, 78, 81, 84
BlsI	GCNGC	5 cut(s)	73, 76, 79, 82, 85
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	1 cut(s)	765
BmeT110I	CYCGRG	1 cut(s)	592
BmgBI	CACGTC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	765
BmrI	ACTGGG	2 cut(s)	576, 640
BmuI	ACTGGG	2 cut(s)	576, 640
BpmI	CTGGAG	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	708
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 486
Bse1I	ACTGG	6 cut(s)	14, 209, 480, 506, 571, 635
Bse3DI	GCAATG	1 cut(s)	137
BseAI	TCCGGA	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	450, 486
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	184, 268
BseNI	ACTGG	6 cut(s)	14, 209, 480, 506, 571, 635
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	5 cut(s)	83, 86, 89, 92, 95
BseYI	CCCAGC	1 cut(s)	654
BshFI	GGCC	2 cut(s)	442, 789
BsiHKAI	GWGCWC	2 cut(s)	161, 358
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	450, 486
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	442, 789
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	161, 358
Bsp13I	TCCGGA	1 cut(s)	428
Bsp1407I	TGTACA	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	338, 369, 623
BspANI	GGCC	2 cut(s)	442, 789
BspCNI	CTCAG	2 cut(s)	183, 269
BspEI	TCCGGA	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	299
BspPI	GGATC	2 cut(s)	333, 377
BsrDI	GCAATG	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	404
BsrI	ACTGG	6 cut(s)	14, 209, 480, 506, 571, 635
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	3 cut(s)	338, 369, 623
BssSI	CACGAG	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	528
BstAUI	TGTACA	1 cut(s)	404
BstDEI	CTNAG	5 cut(s)	61, 170, 277, 348, 508
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	3 cut(s)	341, 372, 626
BstMBI	GATC	3 cut(s)	338, 369, 623
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 77, 80, 83, 141
BstNI	CCWGG	1 cut(s)	765
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	5 cut(s)	83, 86, 89, 92, 95
BstX2I	RGATCY	1 cut(s)	369
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	442, 789
BtrI	CACGTC	1 cut(s)	770
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	379, 709
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	4 cut(s)	7, 405, 483, 499
CviAII	CATG	1 cut(s)	791
CviQI	GTAC	4 cut(s)	7, 405, 483, 499
DdeI	CTNAG	5 cut(s)	61, 170, 277, 348, 508
DpnI	GATC	3 cut(s)	340, 371, 625
DpnII	GATC	3 cut(s)	338, 369, 623
DraI	TTTAAA	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	794
FaiI	YATR	6 cut(s)	52, 337, 610, 652, 786, 792
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	790
FbaI	TGATCA	1 cut(s)	623
Fnu4HI	GCNGC	5 cut(s)	72, 75, 78, 81, 84
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	5 cut(s)	72, 75, 78, 81, 84
FspBI	CTAG	1 cut(s)	154
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	5 cut(s)	72, 75, 78, 81, 84
GsaI	CCCAGC	1 cut(s)	658
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	2 cut(s)	442, 789
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	794
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	3 cut(s)	44, 273, 719
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	2 cut(s)	231, 704
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	278, 392, 563
Hpy188III	TCNNGA	2 cut(s)	429, 645
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	769
HpyCH4V	TGCA	2 cut(s)	291, 694
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 77, 80, 83, 141
HpyF3I	CTNAG	5 cut(s)	61, 170, 277, 348, 508
HpySE526I	ACGT	1 cut(s)	769
Hsp92II	CATG	1 cut(s)	794
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	623
Kzo9I	GATC	3 cut(s)	338, 369, 623
LmnI	GCTCC	2 cut(s)	431, 504
Lsp1109I	GCAGC	5 cut(s)	83, 86, 89, 92, 95
MaeI	CTAG	1 cut(s)	154
MaeII	ACGT	1 cut(s)	769
MaeIII	GTNAC	2 cut(s)	110, 776
MalI	GATC	3 cut(s)	340, 371, 625
MboI	GATC	3 cut(s)	338, 369, 623
MboII	GAAGA	3 cut(s)	77, 177, 545
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	161, 358
MlsI	TGGCCA	1 cut(s)	789
MluCI	AATT	3 cut(s)	268, 307, 662
MluNI	TGGCCA	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	6 cut(s)	58, 199, 205, 221, 317, 529
Mox20I	TGGCCA	1 cut(s)	789
MroI	TCCGGA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	789
MseI	TTAA	2 cut(s)	436, 541
Msp20I	TGGCCA	1 cut(s)	789
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	765
MssI	GTTTAAAC	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	5 cut(s)	23, 77, 80, 83, 141
NdeII	GATC	3 cut(s)	338, 369, 623
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	592
PctI	GAATGC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	273, 719
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	5 cut(s)	73, 76, 79, 82, 85
PleI	GAGTC	1 cut(s)	38
PmeI	GTTTAAAC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	763
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	441
PspXI	VCTCGAGB	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	4 cut(s)	8, 406, 484, 500
RsaNI	GTAC	4 cut(s)	7, 405, 483, 499
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	436, 541
SatI	GCNGC	5 cut(s)	72, 75, 78, 81, 84
Sau3AI	GATC	3 cut(s)	338, 369, 623
Sau96I	GGNCC	1 cut(s)	441
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	2 cut(s)	161, 358
SfcI	CTRYAG	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	592
SlaI	CTCGAG	1 cut(s)	592
SmlI	CTYRAG	2 cut(s)	592, 723
SmoI	CTYRAG	2 cut(s)	592, 723
Sse9I	AATT	3 cut(s)	268, 307, 662
SspMI	CTAG	1 cut(s)	154
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	763
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	2 cut(s)	593, 747
TasI	AATT	3 cut(s)	268, 307, 662
TatI	WGTACW	3 cut(s)	404, 482, 498
TfiI	GAWTC	2 cut(s)	273, 719
Tru1I	TTAA	2 cut(s)	436, 541
Tru9I	TTAA	2 cut(s)	436, 541
TscAI	CASTG	2 cut(s)	386, 709
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	5 cut(s)	71, 74, 77, 80, 83
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	703
TspGWI	ACGGA	2 cut(s)	35, 764
TspRI	CASTG	2 cut(s)	386, 709
XapI	RAATTY	1 cut(s)	662
XhoI	CTCGAG	1 cut(s)	592
XspI	CTAG	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.