AT5G17720

hydrolase, alpha beta fold family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011279
Physical Location & Seq
Forward (+)
5845934 .. 5847653
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17720.1

Sequence Viewer

Length: 1332 bp
ATGATTACTTCGAGTTTCTCAGAAAAATGTACATCAGTTATTAACGGAGCTCCAAGTTGGGCGGTCTTCTTTCTTTTTGACCTCCTCGACTATTTTCTTTGTATCGTTTTCAGATTCCTCGACGAAGTTATGGAAGAAAAATCAGAGTCTTGTCATTGTAATAACCCTCGAGAGAAAACACATTTTGCAGAATACGAGTTCCTTTCGGAGACTCTCTATCGGAGGAGAAACGTTTTCCGACAGGCCGGTTTTCTCCGGTTTGCGAATAAACTCCCTGAGATAACCAAGAAAATAGGTATCGTTACTTTCCTGAGAAAATTTCTTTTTCCTCATACAATGAACAAAGTCTCTCATGAGGTTGCAAACCGGTGGTCTGATTGTGGTTGCAAGACTTGTGTTTCTTGGATCAACACTGATAAACTTAACGTAATCGTCAAGCAACCTTCAATATCAGATTTGTCGATAAGCAACAAACCGGTAGAGAACGTTATTTTCGTACACGGATTTTTGGCATCTTCATCGTTTTGGACCAACACAGTGTTCAAATATCTACCAGAGACCACCGAGGGAACTAACTACAGATTCTTTGCTATCGATCTTCTTGGATTTGGAGACAGCCCGAAACCAAGAGCCAGTCAGTATTCGTTGAAAGAACATGTCGAAATGATCGAAAAATCGGTTATTTTACCAAATAATTTGACTTCATTCCATGTTGTCGCACACTCCATGGGATGCATCATTGGAATAGCCTTAGCTGCAAAATTCTCCGACAGCGTCAAGTCTGTCGCATTAGTAGCTCCCCCGTATTTTGCTGATTCAAAAGGAGGAGCAAGTTGTGCTGCTCTTGATGTGGTCGCTAAGAAGAAACTTTGGCCACCAGCTTCGTTTTTCACGGCGATGATGTGTTGGTATGAACACATTGGCCGTGGCGTTTGCTTGGTCTTTTGTAGGCACCACCGTACATGGGAGAGGATCATCAAAATTGTAACTTGGAGAAGGAAACTACCGACAGCGATAATGGATTTTACAAAGCACACACATCAATCAGGATGGCATAGCATGCACAATGTAATATGCGGAGGAGCGAAATTCACGGATAAACACCTTGAAACTTTGATAAAATCCGGTGTTAAAATCAATGTGATGCAAGGGGATAAAGATGTTGTTGTTCCTATTGATTGTCTATCGAACATGAAAGGAAAGTTCCCTGCGGTTGAAGTCGAGGTTATCGCTGGGACTGATCATAGTACGGTCATAATGAGTAGGAGAGAGGTCTTTGCTGCAAACCTTGTAAGTTTGTGGGCTACTTCCGAAAAGAAACAAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

443

Amino Acids

50.18

Weight (kDa)

9.07

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 158 - 279 9.6e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 163 - 267 1.8e-23 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 163 - 428 1.1e-14 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17720 AT5G17780 AT5G17780
fragaria_vesca FvH4_2g19930 FvH4_2g19930 FvH4_2g19930
malus_domestica MD12G1013100.v1.1
prunus_persica Prupe.7G017500_v2.0.a1
pyrus_communis pycom12g01040
rosa_chinensis RchiOBHm_Chr3g0495891
rosa_laevigata RLG00000022582
rosa_multiflora Rmu_sc0012596.1_g000001
rosa_roxburghii Rroxscaffold_6G00389940
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324600 Rh3BG360600 Rh3BG360700 Rh3CG356800 Rh3DG359800
rosa_wichuraiana Rw3G028360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 951
AciI CCGC 3 cut(s) 62, 1077, 1211
AclI AACGTT 2 cut(s) 231, 486
AclWI GGATC 2 cut(s) 413, 980
AcoI YGGCCR 2 cut(s) 872, 922
AcsI RAATTY 3 cut(s) 317, 761, 1088
AfaI GTAC 4 cut(s) 31, 498, 961, 1249
AfiI CCNNNNNNNGG 1 cut(s) 964
AflIII ACRYGT 1 cut(s) 655
AgeI ACCGGT 2 cut(s) 366, 475
AgsI TTSAA 6 cut(s) 447, 544, 649, 819, 1109, 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 4 cut(s) 50, 755, 797, 881
AluI AGCT 4 cut(s) 50, 755, 797, 881
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 4 cut(s) 203, 352, 551, 606
AlwI GGATC 2 cut(s) 413, 980
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 3 cut(s) 243, 872, 922
ApeKI GCWGC 3 cut(s) 755, 839, 1280
ApoI RAATTY 3 cut(s) 317, 761, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 2 cut(s) 366, 475
AspS9I GGNCC 1 cut(s) 528
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 528
BalI TGGCCA 1 cut(s) 874
BanI GGYRCC 1 cut(s) 951
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 742, 826, 1267
BccI CCATC 1 cut(s) 1044
BceAI ACGGC 2 cut(s) 909, 909
BcgI CGANNNNNNTGC 2 cut(s) 501, 535
BclI TGATCA 1 cut(s) 1240
BcoDI GTCTC 4 cut(s) 203, 352, 551, 606
BfmI CTRYAG 1 cut(s) 577
BisI GCNGC 3 cut(s) 756, 840, 1281
BlsI GCNGC 3 cut(s) 757, 841, 1282
Bme18I GGWCC 1 cut(s) 528
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 1 cut(s) 953
BmsI GCATC 4 cut(s) 521, 722, 744, 1134
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 751
Bsa29I ATCGAT 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 564, 726, 925
BsaWI WCCGGW 4 cut(s) 255, 366, 475, 1124
Bsc4I CCNNNNNNNGG 1 cut(s) 964
Bse118I RCCGGY 3 cut(s) 245, 366, 475
Bse1I ACTGG 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 3 cut(s) 564, 726, 925
BseGI GGATG 2 cut(s) 737, 1055
BseLI CCNNNNNNNGG 1 cut(s) 964
BseMII CTCAG 3 cut(s) 33, 267, 302
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 4 cut(s) 74, 238, 840, 1095
BseXI GCAGC 3 cut(s) 742, 826, 1267
BseYI CCCAGC 1 cut(s) 1232
BshFI GGCC 3 cut(s) 245, 874, 924
BshNI GGYRCC 1 cut(s) 951
BshTI ACCGGT 2 cut(s) 366, 475
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 5 cut(s) 246, 256, 367, 476, 1125
BslFI GGGAC 1 cut(s) 1249
BslI CCNNNNNNNGG 1 cut(s) 964
BsmAI GTCTC 4 cut(s) 203, 352, 551, 606
BsmFI GGGAC 1 cut(s) 1249
BsnI GGCC 3 cut(s) 245, 874, 924
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 52
Bsp1407I TGTACA 1 cut(s) 29
Bsp143I GATC 5 cut(s) 405, 595, 666, 972, 1240
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 3 cut(s) 62, 1077, 1211
BspANI GGCC 3 cut(s) 245, 874, 924
BspCNI CTCAG 3 cut(s) 32, 268, 303
BspDI ATCGAT 1 cut(s) 594
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 953
BspPI GGATC 2 cut(s) 413, 980
BspT107I GGYRCC 1 cut(s) 951
BspTNI GGTCTC 1 cut(s) 551
BsrFI RCCGGY 3 cut(s) 245, 366, 475
BsrGI TGTACA 1 cut(s) 29
BsrI ACTGG 1 cut(s) 633
BssAI RCCGGY 3 cut(s) 245, 366, 475
BssECI CCNNGG 3 cut(s) 564, 726, 925
BssMI GATC 5 cut(s) 405, 595, 666, 972, 1240
BssT1I CCWWGG 1 cut(s) 726
Bst4CI ACNGT 3 cut(s) 538, 959, 1252
BstAPI GCANNNNNTGC 2 cut(s) 836, 1060
BstAUI TGTACA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 1061
BstDEI CTNAG 5 cut(s) 19, 276, 311, 751, 858
BstDSI CCRYGG 2 cut(s) 726, 925
BstF5I GGATG 2 cut(s) 737, 1055
BstKTI GATC 5 cut(s) 408, 598, 669, 975, 1243
BstMAI GTCTC 4 cut(s) 203, 352, 551, 606
BstMBI GATC 5 cut(s) 405, 595, 666, 972, 1240
BstMWI GCNNNNNNNGC 4 cut(s) 755, 794, 836, 1060
BstNSI RCATGY 2 cut(s) 659, 1063
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 3 cut(s) 742, 826, 1267
BstV2I GAAGAC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 3 cut(s) 245, 874, 924
BsuTUI ATCGAT 1 cut(s) 594
BtgI CCRYGG 2 cut(s) 726, 925
BtgZI GCGATG 1 cut(s) 911
BtsCI GGATG 2 cut(s) 737, 1055
BtsIMutI CAGTG 2 cut(s) 411, 543
Cac8I GCNNGC 1 cut(s) 1061
CciI TCATGA 1 cut(s) 352
Cfr10I RCCGGY 3 cut(s) 245, 366, 475
Cfr13I GGNCC 1 cut(s) 528
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 763
Csp6I GTAC 4 cut(s) 30, 497, 960, 1248
CspAI ACCGGT 2 cut(s) 366, 475
CviAII CATG 7 cut(s) 353, 656, 710, 727, 963, 1060, 1192
CviQI GTAC 4 cut(s) 30, 497, 960, 1248
DdeI CTNAG 5 cut(s) 19, 276, 311, 751, 858
DpnI GATC 5 cut(s) 407, 597, 668, 974, 1242
DpnII GATC 5 cut(s) 405, 595, 666, 972, 1240
EaeI YGGCCR 2 cut(s) 872, 922
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 528
Eco53kI GAGCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 726
EcoT22I ATGCAT 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 7 cut(s) 356, 659, 713, 730, 966, 1063, 1195
FaqI GGGAC 1 cut(s) 1249
FatI CATG 7 cut(s) 352, 655, 709, 726, 962, 1059, 1191
FbaI TGATCA 1 cut(s) 1240
Fnu4HI GCNGC 3 cut(s) 756, 840, 1281
FokI GGATG 2 cut(s) 744, 1062
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 756, 840, 1281
GluI GCNGC 3 cut(s) 756, 840, 1281
GsaI CCCAGC 1 cut(s) 1236
HaeIII GGCC 3 cut(s) 245, 874, 924
HapII CCGG 5 cut(s) 246, 256, 367, 476, 1125
HgaI GACGC 1 cut(s) 763
Hin1II CATG 7 cut(s) 356, 659, 713, 730, 966, 1063, 1195
HinfI GANTC 5 cut(s) 114, 146, 211, 582, 815
HpaII CCGG 5 cut(s) 246, 256, 367, 476, 1125
Hpy166II GTNNAC 1 cut(s) 499
Hpy188III TCNNGA 5 cut(s) 170, 310, 353, 845, 1047
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 453, 990
HpyCH4III ACNGT 3 cut(s) 538, 959, 1252
HpyCH4IV ACGT 3 cut(s) 231, 426, 486
HpyCH4V TGCA 8 cut(s) 188, 362, 387, 735, 758, 1063, 1147, 1283
HpyF10VI GCNNNNNNNGC 4 cut(s) 755, 794, 836, 1060
HpyF3I CTNAG 5 cut(s) 19, 276, 311, 751, 858
HpySE526I ACGT 3 cut(s) 231, 426, 486
Hsp92II CATG 7 cut(s) 356, 659, 713, 730, 966, 1063, 1195
Ksp22I TGATCA 1 cut(s) 1240
Kzo9I GATC 5 cut(s) 405, 595, 666, 972, 1240
LmnI GCTCC 5 cut(s) 47, 55, 802, 827, 1082
Lsp1109I GCAGC 3 cut(s) 742, 826, 1267
LweI GCATC 4 cut(s) 521, 722, 744, 1134
MaeII ACGT 3 cut(s) 231, 426, 486
MaeIII GTNAC 2 cut(s) 301, 985
MalI GATC 5 cut(s) 407, 597, 668, 974, 1242
MboI GATC 5 cut(s) 405, 595, 666, 972, 1240
MboII GAAGA 5 cut(s) 58, 146, 507, 590, 874
MhlI GDGCHC 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 874
MluCI AATT 5 cut(s) 317, 694, 761, 981, 1088
MluNI TGGCCA 1 cut(s) 874
MlyI GAGTC 2 cut(s) 155, 205
MmeI TCCRAC 2 cut(s) 262, 792
Mox20I TGGCCA 1 cut(s) 874
Mph1103I ATGCAT 1 cut(s) 737
MscI TGGCCA 1 cut(s) 874
MseI TTAA 3 cut(s) 42, 423, 1131
MslI CAYNNNNRTG 1 cut(s) 896
Msp20I TGGCCA 1 cut(s) 874
MspI CCGG 5 cut(s) 246, 256, 367, 476, 1125
MwoI GCNNNNNNNGC 4 cut(s) 755, 794, 836, 1060
NcoI CCATGG 1 cut(s) 726
NdeII GATC 5 cut(s) 405, 595, 666, 972, 1240
NlaIII CATG 7 cut(s) 356, 659, 713, 730, 966, 1063, 1195
NlaIV GGNNCC 1 cut(s) 953
NsiI ATGCAT 1 cut(s) 737
NspI RCATGY 2 cut(s) 659, 1063
PaeI GCATGC 1 cut(s) 1063
PaeR7I CTCGAG 1 cut(s) 168
PagI TCATGA 1 cut(s) 352
PciI ACATGT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 2 cut(s) 492, 666
PfeI GAWTC 3 cut(s) 114, 582, 815
PflFI GACNNNGTC 1 cut(s) 773
PinAI ACCGGT 2 cut(s) 366, 475
PkrI GCNGC 3 cut(s) 757, 841, 1282
PleI GAGTC 2 cut(s) 154, 205
PpsI GAGTC 2 cut(s) 154, 205
PscI ACATGT 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 52
Psp1406I AACGTT 2 cut(s) 231, 486
PspFI CCCAGC 1 cut(s) 1232
PspN4I GGNNCC 1 cut(s) 953
PspPI GGNCC 1 cut(s) 528
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 4 cut(s) 31, 498, 961, 1249
RsaNI GTAC 4 cut(s) 30, 497, 960, 1248
RseI CAYNNNNRTG 1 cut(s) 896
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 3 cut(s) 42, 423, 1131
SatI GCNGC 3 cut(s) 756, 840, 1281
Sau3AI GATC 5 cut(s) 405, 595, 666, 972, 1240
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 2 cut(s) 155, 205
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 4 cut(s) 521, 722, 744, 1134
SfcI CTRYAG 1 cut(s) 577
Sfr274I CTCGAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 1063
Sse9I AATT 5 cut(s) 317, 694, 761, 981, 1088
SsiI CCGC 3 cut(s) 62, 1077, 1211
SstI GAGCTC 1 cut(s) 52
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 3 cut(s) 538, 959, 1252
TaiI ACGT 3 cut(s) 234, 429, 489
TasI AATT 5 cut(s) 317, 694, 761, 981, 1088
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 3 cut(s) 114, 582, 815
Tru1I TTAA 3 cut(s) 42, 423, 1131
Tru9I TTAA 3 cut(s) 42, 423, 1131
TscAI CASTG 2 cut(s) 418, 543
TseI GCWGC 3 cut(s) 755, 839, 1280
TspDTI ATGAA 5 cut(s) 353, 507, 693, 927, 1208
TspGWI ACGGA 3 cut(s) 60, 516, 1109
TspRI CASTG 2 cut(s) 418, 543
Tth111I GACNNNGTC 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 528
XapI RAATTY 3 cut(s) 317, 761, 1088
XceI RCATGY 2 cut(s) 659, 1063
XhoI CTCGAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.