Rh3BG360700

Serine hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011279
Physical Location & Seq
Reverse (-)
43529672 .. 43531123
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG360700.1

Sequence Viewer

Length: 954 bp
ATGTTTCCTCAGTGGCTGAAAAAGCCGGCAACAGCTCTCAATTCTGCCTTGGGCTTCATCGTGTTCCTTATATTTGACTTTCTTGATGCCATTTTGTGTGTCCTCTTCAGATATTTTGATCACTTGTTTGAAGGGCGGCCGGGCTCTTGTTACTGTGGACGCAAGGAAATAGAGCTGGTCAGGAATGTGGTTGGTGATGAAGAAGATCACCAGCTTTCAGAGACTTTATACCGGAGGAAAAACGTCTTCAGGGAAATGGGTCTGGTTGGATTTGCAAAAAGCTGCCAGAACACAAGTGCTGGCGGAGTTGCCAGGTGGTCTGACTGTGGATGTCACTCTTGTGTTTCATGGCTGAATGATACTCATCACAACTTACATCTTGTTATTATGCAGCCTTCATCACCAGCCATCACTGAGGATTGCAGAGTACAAGCAGCCGAGAATGTGATATTCCTTCACGGGTTTCTTTCTTCTTCCTCATTTTGGGCAGAAACAGTGTTTCCAAACATTTCGGAACCTGTGAGTCGGCAATATAGGTTGTTTGCCATAGACCTATTGGGATTTGGTTTAAGCCCAAAGCCAAGGGACTGTTTGTATACTTTGAAGGATCACACAGAAATGATTGAGAAATCTGTCATCTGCCCCTTCCAGTTGACTTCTTTCCATTTGGTTGCACACTCCATGGGTTGTCTGATTGCAATCGCTTTAGCTGCTAAGCACTCGCAATTAGTAAAATCAATCACTCTTGTAGCACCTCCTTACTTCCCTTCTAAAGATGGAGATAGTTTAAGAGTGCTTCACAAGCTTGCTGAAAGGAAACTGTGGCCACTTACCTTGTTTGGATCATCATTTATGTCATGGTATGAGCATCTGGGTCGATGTGTCTGTTTCGTTTTATGCCGCAACCACAGGGCATGGGAGAGGATTGTAAAGTTATTCACTCGGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

317

Amino Acids

36.18

Weight (kDa)

8.63

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 147 - 270 1.7e-09 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 149 - 253 1e-23 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 149 - 310 5.7e-16 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17720 AT5G17780 AT5G17780
fragaria_vesca FvH4_2g19930 FvH4_2g19930 FvH4_2g19930
malus_domestica MD12G1013100.v1.1
prunus_persica Prupe.7G017500_v2.0.a1
pyrus_communis pycom12g01040
rosa_chinensis RchiOBHm_Chr3g0495891
rosa_laevigata RLG00000022582
rosa_multiflora Rmu_sc0012596.1_g000001
rosa_roxburghii Rroxscaffold_6G00389940
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324600 Rh3BG360600 Rh3BG360700 Rh3CG356800 Rh3DG359800
rosa_wichuraiana Rw3G028360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 596
AciI CCGC 3 cut(s) 136, 303, 901
AclWI GGATC 2 cut(s) 615, 850
AcoI YGGCCR 2 cut(s) 137, 824
AcuI CTGAAG 2 cut(s) 91, 232
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 483
AgsI TTSAA 2 cut(s) 131, 604
AjnI CCWGG 1 cut(s) 311
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 6 cut(s) 35, 175, 214, 282, 710, 805
AluI AGCT 6 cut(s) 35, 175, 214, 282, 710, 805
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 615, 850
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 137, 824
ApeKI GCWGC 4 cut(s) 282, 391, 434, 710
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 200, 206, 393
BalI TGGCCA 1 cut(s) 826
BanII GRGCYC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 4 cut(s) 269, 403, 446, 697
BccI CCATC 2 cut(s) 416, 770
BcgI CGANNNNNNTGC 2 cut(s) 857, 891
BciT130I CCWGG 1 cut(s) 313
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 6 cut(s) 137, 283, 392, 435, 711, 901
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 6 cut(s) 138, 284, 393, 436, 712, 902
Bme1390I CCNGG 2 cut(s) 141, 313
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 2 cut(s) 141, 313
BmsI GCATC 2 cut(s) 76, 877
BpiI GAAGAC 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 141
BsaBI GATNNNNATC 2 cut(s) 363, 698
BsaJI CCNNGG 3 cut(s) 48, 581, 681
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 649
Bse8I GATNNNNATC 2 cut(s) 363, 698
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 3 cut(s) 48, 581, 681
BseGI GGATG 1 cut(s) 335
BseJI GATNNNNATC 2 cut(s) 363, 698
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 23, 405
BseNI ACTGG 1 cut(s) 649
BseX3I CGGCCG 1 cut(s) 137
BseXI GCAGC 4 cut(s) 269, 403, 446, 697
Bsh1285I CGRYCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 139, 826
BsiEI CGRYCG 1 cut(s) 140
BsiSI CCGG 3 cut(s) 26, 140, 232
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 2 cut(s) 139, 826
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 4 cut(s) 118, 205, 607, 842
Bsp1720I GCTNAGC 1 cut(s) 714
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 3 cut(s) 136, 303, 901
BspANI GGCC 2 cut(s) 139, 826
BspCNI CTCAG 2 cut(s) 22, 406
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 2 cut(s) 615, 850
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 48, 581, 681
BssMI GATC 4 cut(s) 118, 205, 607, 842
BssNAI GTATAC 1 cut(s) 597
BssT1I CCWWGG 3 cut(s) 48, 581, 681
Bst1107I GTATAC 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 5 cut(s) 155, 326, 496, 590, 822
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 27, 301, 807
BstDEI CTNAG 3 cut(s) 9, 414, 714
BstDSI CCRYGG 1 cut(s) 681
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 4 cut(s) 121, 208, 610, 845
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 118, 205, 607, 842
BstMCI CGRYCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 3 cut(s) 22, 710, 802
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 139, 311
BstV1I GCAGC 4 cut(s) 269, 403, 446, 697
BstV2I GAAGAC 1 cut(s) 238
BstZ17I GTATAC 1 cut(s) 597
BstZI CGGCCG 1 cut(s) 137
BsuRI GGCC 2 cut(s) 139, 826
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 3 cut(s) 17, 411, 501
Cac8I GCNNGC 3 cut(s) 27, 301, 807
CaiI CAGNNNCTG 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 25
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 428
CspCI CAANNNNNGTGG 2 cut(s) 816, 851
CviAII CATG 4 cut(s) 348, 682, 858, 915
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 3 cut(s) 9, 414, 714
DpnI GATC 4 cut(s) 120, 207, 609, 844
DpnII GATC 4 cut(s) 118, 205, 607, 842
EaeI YGGCCR 2 cut(s) 137, 824
EagI CGGCCG 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 318
EclXI CGGCCG 1 cut(s) 137
Eco130I CCWWGG 3 cut(s) 48, 581, 681
Eco24I GRGCYC 1 cut(s) 146
Eco52I CGGCCG 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 91, 232
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 3 cut(s) 48, 581, 681
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 3 cut(s) 48, 581, 681
FaeI CATG 4 cut(s) 351, 685, 861, 918
FaqI GGGAC 1 cut(s) 599
FatI CATG 4 cut(s) 347, 681, 857, 914
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 6 cut(s) 137, 283, 392, 435, 711, 901
FokI GGATG 1 cut(s) 342
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 6 cut(s) 137, 283, 392, 435, 711, 901
GluI GCNGC 6 cut(s) 137, 283, 392, 435, 711, 901
HaeIII GGCC 2 cut(s) 139, 826
HapII CCGG 3 cut(s) 26, 140, 232
HgaI GACGC 1 cut(s) 168
Hin1II CATG 4 cut(s) 351, 685, 861, 918
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 1 cut(s) 523
HpaII CCGG 3 cut(s) 26, 140, 232
HphI GGTGA 3 cut(s) 200, 206, 393
Hpy166II GTNNAC 3 cut(s) 158, 597, 654
Hpy188I TCNGA 6 cut(s) 110, 220, 322, 514, 693, 945
Hpy188III TCNNGA 2 cut(s) 83, 181
Hpy8I GTNNAC 3 cut(s) 158, 597, 654
HpyAV CCTTC 6 cut(s) 125, 405, 464, 598, 655, 777
HpyCH4III ACNGT 5 cut(s) 155, 326, 496, 590, 822
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 5 cut(s) 275, 391, 423, 674, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 710, 802
HpyF3I CTNAG 3 cut(s) 9, 414, 714
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 4 cut(s) 351, 685, 861, 918
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 118, 205, 607, 842
Lsp1109I GCAGC 4 cut(s) 269, 403, 446, 697
LweI GCATC 2 cut(s) 76, 877
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 149, 332
MalI GATC 4 cut(s) 120, 207, 609, 844
MboI GATC 4 cut(s) 118, 205, 607, 842
MboII GAAGA 6 cut(s) 97, 212, 215, 238, 462, 465
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 2 cut(s) 40, 725
MluNI TGGCCA 1 cut(s) 826
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 9 cut(s) 18, 113, 228, 409, 487, 765, 915, 939, 942
Mox20I TGGCCA 1 cut(s) 826
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 826
MseI TTAA 2 cut(s) 569, 788
MslI CAYNNNNRTG 2 cut(s) 339, 617
Msp20I TGGCCA 1 cut(s) 826
MspI CCGG 3 cut(s) 26, 140, 232
MspR9I CCNGG 2 cut(s) 141, 313
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 3 cut(s) 22, 710, 802
NaeI GCCGGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 141
NcoI CCATGG 1 cut(s) 681
NdeII GATC 4 cut(s) 118, 205, 607, 842
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 351, 685, 861, 918
NlaIV GGNNCC 1 cut(s) 516
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 332
OliI CACNNNNGTG 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 27
PkrI GCNGC 6 cut(s) 138, 284, 393, 436, 712, 902
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 516
PstNI CAGNNNCTG 1 cut(s) 16
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 2 cut(s) 339, 617
SaqAI TTAA 2 cut(s) 569, 788
SatI GCNGC 6 cut(s) 137, 283, 392, 435, 711, 901
Sau3AI GATC 4 cut(s) 118, 205, 607, 842
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 2 cut(s) 141, 313
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 2 cut(s) 76, 877
SmiMI CAYNNNNRTG 2 cut(s) 339, 617
Sse9I AATT 2 cut(s) 40, 725
SsiI CCGC 3 cut(s) 136, 303, 901
StyD4I CCNGG 2 cut(s) 139, 311
StyI CCWWGG 3 cut(s) 48, 581, 681
TaaI ACNGT 5 cut(s) 155, 326, 496, 590, 822
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 877
TasI AATT 2 cut(s) 40, 725
TatI WGTACW 1 cut(s) 427
TauI GCSGC 2 cut(s) 139, 903
Tru1I TTAA 2 cut(s) 569, 788
Tru9I TTAA 2 cut(s) 569, 788
TscAI CASTG 3 cut(s) 17, 418, 501
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 4 cut(s) 282, 391, 434, 710
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 46, 213, 336, 387
TspRI CASTG 3 cut(s) 17, 418, 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.