AT5G17780

hydrolase, alpha beta fold family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011279
Physical Location & Seq
Reverse (-)
5867169 .. 5869065
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17780.2

Sequence Viewer

Length: 1254 bp
ATGTCTTTCCCGAGAAAATTCGGGACAGCGATTCACGCCGCTCTATCTTTTATCGTCTTCTTTTTCTTGGACCTCCTCGACGCGATTCTCTGTGTCGTTTACGAGTTCGTCGATGAGATTTTGGAAGAAAACTCAACAGGTTGTTACTGCACGGCGGCGGCTCCTCAAAGTCAAACCACCGACGAAAATGAGTTGTCGTCGGAGACTTTATTCGGGAGGAGAAACATTTTCCGGGGAATGTGGTTTCTGGGATTCGCGAGAGAATTCAAATCCAAGCTTTCCCGGAAACTGAGAAAATCTAAGATTCATCAAGAGTCAGTGAATCGATGGTCAGATTGTGGATGCAAATCTTGCAAGTCATGGACTAAGAACGAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTCTCGAGAGTACTCTGTTCAAGAACCGTCCGAGAATGTAATATTCATACACGGTTTTATGGGGTCATCACATTTTTGGACAGAAACTGTATTTGAACACATTCAAAAAGATGATTATAGGCTCCTCGCGATCGATCTTTTGGGATTCGGGGAGAGTCCTAAGCCAAGGGATAGTCTCTATACATTGAAAGATCATGTGGATACGATAGAGAGATCTGTCATTAAGCCATACCAATTAGATTCTTTTCATGTGGTTGCACATTCAATGGGTTGCTTAATTGCTCTTGCTTTGGCTGCTAAACATTCCAACATTGTTAAATCCGTTACTCTTGTTGCACCGCCTTATTTTCCTTCATCGGTAGAAGGATCGGTCTTGAACCGAATCGCTAGAAAGCGGTTGTGGCCACCGCTTGCGTTTGGGACAGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCTGCAAGCATCATAAGATATGGGAGTGGCTAATCAAGCTATGTATAGGTAAAAGGGAGATTCATTGGAAGATCAAGGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACAATGTGATATGTGGTGGCTCCAAAGTCGCTGATGAACATCTTGAAACCCTAATAAAGTCTGGCGTTAAGATTCACTTGATGCAAGGCGACTGTGACCAAATCGTTCCTTCACATTGCTCTGGCAACATGAAGAGGACTTTTCCGGCGGTGGAAGTTGATATCATTACTGGTGCTGATCATGATAGTATGATAAGCGGAAGAGGAGAAGAGTTTGCTGAGAAATTGGAGAGCATTTGGTGTTCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

417

Amino Acids

47.46

Weight (kDa)

7.08

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 146 - 299 1.5e-13 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 152 - 262 2.1e-28 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 152 - 410 1.5e-18 Alpha/beta hydrolase family
LIDHydrolase PF10230 152 - 391 1.6e-07 Lipid-droplet associated hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17720 AT5G17780 AT5G17780
fragaria_vesca FvH4_2g19930 FvH4_2g19930 FvH4_2g19930
malus_domestica MD12G1013100.v1.1
prunus_persica Prupe.7G017500_v2.0.a1
pyrus_communis pycom12g01040
rosa_chinensis RchiOBHm_Chr3g0495891
rosa_laevigata RLG00000022582
rosa_multiflora Rmu_sc0012596.1_g000001
rosa_roxburghii Rroxscaffold_6G00389940
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324600 Rh3BG360600 Rh3BG360700 Rh3CG356800 Rh3DG359800
rosa_wichuraiana Rw3G028360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 3 cut(s) 83, 257, 539
AciI CCGC 9 cut(s) 39, 155, 158, 749, 805, 818, 836, 1151, 1200
AclWI GGATC 1 cut(s) 784
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 2 cut(s) 17, 263
AdeI CACNNNGTG 2 cut(s) 394, 1009
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 8 cut(s) 268, 431, 506, 515, 598, 675, 787, 1049
AjiI CACGTC 1 cut(s) 391
AluBI AGCT 2 cut(s) 277, 922
AluI AGCT 2 cut(s) 277, 922
Alw26I GTCTC 2 cut(s) 197, 590
AlwI GGATC 1 cut(s) 784
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 2 cut(s) 10, 414
AoxI GGCC 1 cut(s) 812
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 2 cut(s) 17, 263
Asp700I GAANNNNTTC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 233, 283
AsuHPI GGTGA 1 cut(s) 850
AvaI CYCGRG 2 cut(s) 10, 414
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 814
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 691
BccI CCATC 2 cut(s) 321, 371
BceAI ACGGC 1 cut(s) 168
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 2 cut(s) 233, 283
BcoDI GTCTC 2 cut(s) 197, 590
BfaI CTAG 1 cut(s) 798
BfuI GTATCC 1 cut(s) 604
BglII AGATCT 1 cut(s) 623
BisI GCNGC 4 cut(s) 39, 156, 159, 705
BlsI GCNGC 4 cut(s) 40, 157, 160, 706
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 233, 283
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 2 cut(s) 10, 414
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 162, 533, 1024
BmrFI CCNGG 2 cut(s) 233, 283
BmsI GCATC 4 cut(s) 332, 857, 901, 1074
BpiI GAAGAC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 570
BpuMI CCSGG 2 cut(s) 233, 283
Bsa29I ATCGAT 2 cut(s) 325, 543
BsaBI GATNNNNATC 3 cut(s) 346, 381, 1041
BsaJI CCNNGG 2 cut(s) 232, 575
Bse1I ACTGG 1 cut(s) 1177
Bse3DI GCAATG 1 cut(s) 1117
Bse8I GATNNNNATC 3 cut(s) 346, 381, 1041
BseCI ATCGAT 2 cut(s) 325, 543
BseDI CCNNGG 2 cut(s) 232, 575
BseGI GGATG 1 cut(s) 347
BseJI GATNNNNATC 3 cut(s) 346, 381, 1041
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 2 cut(s) 281, 1212
BseNI ACTGG 1 cut(s) 1177
BseRI GAGGAG 5 cut(s) 65, 153, 232, 524, 1221
BseXI GCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 3 cut(s) 83, 257, 539
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 1 cut(s) 814
BshVI ATCGAT 2 cut(s) 325, 543
BsiEI CGRYCG 1 cut(s) 543
BsiHKCI CYCGRG 2 cut(s) 10, 414
BsiSI CCGG 3 cut(s) 232, 283, 1148
BslFI GGGAC 2 cut(s) 37, 844
BsmAI GTCTC 2 cut(s) 197, 590
BsmFI GGGAC 2 cut(s) 37, 844
BsnI GGCC 1 cut(s) 814
BsoBI CYCGRG 2 cut(s) 10, 414
Bsp143I GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
Bsp68I TCGCGA 2 cut(s) 257, 539
BspACI CCGC 9 cut(s) 39, 155, 158, 749, 805, 818, 836, 1151, 1200
BspANI GGCC 1 cut(s) 814
BspCNI CTCAG 2 cut(s) 282, 1213
BspDI ATCGAT 2 cut(s) 325, 543
BspFNI CGCG 3 cut(s) 83, 257, 539
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 3 cut(s) 162, 533, 1024
BspPI GGATC 1 cut(s) 784
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 1117
BsrI ACTGG 1 cut(s) 1177
BssECI CCNNGG 2 cut(s) 232, 575
BssMI GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
BssT1I CCWWGG 1 cut(s) 575
Bst4CI ACNGT 4 cut(s) 438, 464, 499, 1097
Bst6I CTCTTC 3 cut(s) 1130, 1198, 1206
BstAPI GCANNNNNTGC 2 cut(s) 351, 1000
BstC8I GCNNGC 2 cut(s) 822, 890
BstDEI CTNAG 5 cut(s) 290, 300, 366, 570, 1221
BstF5I GGATG 1 cut(s) 347
BstFNI CGCG 3 cut(s) 83, 257, 539
BstKTI GATC 7 cut(s) 543, 547, 604, 626, 779, 957, 1183
BstMAI GTCTC 2 cut(s) 197, 590
BstMBI GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 6 cut(s) 35, 351, 704, 811, 919, 1000
BstSCI CCNGG 2 cut(s) 231, 281
BstUI CGCG 3 cut(s) 83, 257, 539
BstV1I GCAGC 1 cut(s) 691
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
Bsu15I ATCGAT 2 cut(s) 325, 543
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 814
BsuTUI ATCGAT 2 cut(s) 325, 543
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 324
BtuMI TCGCGA 2 cut(s) 257, 539
Cac8I GCNNGC 2 cut(s) 822, 890
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 1183
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 2 cut(s) 325, 543
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 421
CviAII CATG 7 cut(s) 360, 605, 659, 990, 1132, 1184, 1248
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 5 cut(s) 290, 300, 366, 570, 1221
DpnI GATC 7 cut(s) 542, 546, 603, 625, 778, 956, 1182
DpnII GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
DraIII CACNNNGTG 2 cut(s) 394, 1009
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 1130, 1198, 1206
EarI CTCTTC 3 cut(s) 1130, 1198, 1206
Eco130I CCWWGG 1 cut(s) 575
Eco32I GATATC 1 cut(s) 1165
Eco47I GGWCC 1 cut(s) 70
Eco88I CYCGRG 2 cut(s) 10, 414
EcoRI GAATTC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 1165
EcoT14I CCWWGG 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 575
FaeI CATG 7 cut(s) 363, 608, 662, 993, 1135, 1187, 1251
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 2 cut(s) 37, 844
FatI CATG 7 cut(s) 359, 604, 658, 989, 1131, 1183, 1247
FbaI TGATCA 1 cut(s) 1180
Fnu4HI GCNGC 4 cut(s) 39, 156, 159, 705
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 4 cut(s) 39, 156, 159, 705
FspBI CTAG 1 cut(s) 798
GluI GCNGC 4 cut(s) 39, 156, 159, 705
HaeIII GGCC 1 cut(s) 814
HapII CCGG 3 cut(s) 232, 283, 1148
HgaI GACGC 1 cut(s) 89
Hin1II CATG 7 cut(s) 363, 608, 662, 993, 1135, 1187, 1251
HindIII AAGCTT 1 cut(s) 275
HpaII CCGG 3 cut(s) 232, 283, 1148
HphI GGTGA 1 cut(s) 850
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 202, 334, 442
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 5 cut(s) 83, 113, 185, 202, 395
HpyAV CCTTC 3 cut(s) 767, 771, 1122
HpyCH4III ACNGT 4 cut(s) 438, 464, 499, 1097
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 9 cut(s) 150, 345, 354, 668, 746, 888, 989, 1003, 1087
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 351, 704, 811, 919, 1000
HpyF3I CTNAG 5 cut(s) 290, 300, 366, 570, 1221
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 7 cut(s) 363, 608, 662, 993, 1135, 1187, 1251
Ksp22I TGATCA 1 cut(s) 1180
Kzo9I GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
LmnI GCTCC 3 cut(s) 166, 537, 1028
LpnPI CCDG 8 cut(s) 123, 233, 245, 296, 1050, 1110, 1158, 1161
Lsp1109I GCAGC 1 cut(s) 691
LweI GCATC 4 cut(s) 332, 857, 901, 1074
MaeI CTAG 1 cut(s) 798
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 143, 733, 1097
MalI GATC 7 cut(s) 542, 546, 603, 625, 778, 956, 1182
MbiI CCGCTC 1 cut(s) 41
MboI GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
MboII GAAGA 8 cut(s) 49, 137, 377, 386, 964, 1147, 1215, 1223
MflI RGATCY 1 cut(s) 623
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 5 cut(s) 17, 263, 644, 687, 1226
MluNI TGGCCA 1 cut(s) 814
MlyI GAGTC 2 cut(s) 323, 574
MmeI TCCRAC 2 cut(s) 180, 741
MnlI CCTC 7 cut(s) 83, 86, 174, 210, 545, 1131, 1199
Mox20I TGGCCA 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 814
MseI TTAA 5 cut(s) 633, 686, 726, 1071, 1252
Msp20I TGGCCA 1 cut(s) 814
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 3 cut(s) 232, 283, 1148
MspR9I CCNGG 2 cut(s) 233, 283
MvnI CGCG 3 cut(s) 83, 257, 539
MwoI GCNNNNNNNGC 6 cut(s) 35, 351, 704, 811, 919, 1000
NciI CCSGG 2 cut(s) 233, 283
NdeII GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
NlaIII CATG 7 cut(s) 363, 608, 662, 993, 1135, 1187, 1251
NlaIV GGNNCC 3 cut(s) 162, 533, 1024
NmuCI GTSAC 1 cut(s) 1097
NruI TCGCGA 2 cut(s) 257, 539
PaeR7I CTCGAG 1 cut(s) 414
PagI TCATGA 1 cut(s) 1183
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 510
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 4 cut(s) 40, 157, 160, 706
Ple19I CGATCG 1 cut(s) 543
PleI GAGTC 2 cut(s) 322, 573
PpsI GAGTC 2 cut(s) 322, 573
PspN4I GGNNCC 3 cut(s) 162, 533, 1024
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 623
PvuI CGATCG 1 cut(s) 543
RruI TCGCGA 2 cut(s) 257, 539
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SaqAI TTAA 5 cut(s) 633, 686, 726, 1071, 1252
SatI GCNGC 4 cut(s) 39, 156, 159, 705
Sau3AI GATC 7 cut(s) 540, 544, 601, 623, 776, 954, 1180
Sau96I GGNCC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 323, 574
ScrFI CCNGG 2 cut(s) 233, 283
SetI ASST 6 cut(s) 75, 142, 279, 393, 924, 934
SfaNI GCATC 4 cut(s) 332, 857, 901, 1074
Sfr274I CTCGAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 5 cut(s) 17, 263, 644, 687, 1226
SsiI CCGC 9 cut(s) 39, 155, 158, 749, 805, 818, 836, 1151, 1200
SspI AATATT 1 cut(s) 453
SspMI CTAG 1 cut(s) 798
StyD4I CCNGG 2 cut(s) 231, 281
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 4 cut(s) 438, 464, 499, 1097
TaiI ACGT 1 cut(s) 393
TaqI TCGA 5 cut(s) 78, 111, 325, 415, 543
TaqII GACCGA 1 cut(s) 769
TasI AATT 5 cut(s) 17, 263, 644, 687, 1226
TatI WGTACW 1 cut(s) 420
TauI GCSGC 3 cut(s) 41, 158, 161
Tru1I TTAA 5 cut(s) 633, 686, 726, 1071, 1252
Tru9I TTAA 5 cut(s) 633, 686, 726, 1071, 1252
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 1 cut(s) 704
Tsp45I GTSAC 1 cut(s) 1097
TspGWI ACGGA 1 cut(s) 721
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 17, 263
XhoI CTCGAG 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 798
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.