Rmu_sc0012596.1_g000001

Serine hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012596.1
OG0011279
Physical Location & Seq
Forward (+)
414 .. 713
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012596.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
atggacttgactaggcacacccatcactcagcttggcacaccatgcacaatgtgatatgtgggggtgcaaagttaatggaatgctacttggaagttataggcaaagctggggttaaagtgtctgtgatccatggagatagagaccaggttgtccctgtagagtgcagcaacaacattcagatgacagttcctgaggcacaagttaacatcattaaaaatgctgatcattcctctgtactccttggccgagagaaagacttcactctccatctagagcacgtttgggccgcttcctcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

6.27

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17720 AT5G17780 AT5G17780
fragaria_vesca FvH4_2g19930 FvH4_2g19930 FvH4_2g19930
malus_domestica MD12G1013100.v1.1
prunus_persica Prupe.7G017500_v2.0.a1
pyrus_communis pycom12g01040
rosa_chinensis RchiOBHm_Chr3g0495891
rosa_laevigata RLG00000022582
rosa_multiflora Rmu_sc0012596.1_g000001
rosa_roxburghii Rroxscaffold_6G00389940
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324600 Rh3BG360600 Rh3BG360700 Rh3CG356800 Rh3DG359800
rosa_wichuraiana Rw3G028360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 32, 107
AluI AGCT 2 cut(s) 32, 107
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 2 cut(s) 244, 285
ApeKI GCWGC 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 285
AxyI CCTNAGG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 30, 276
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 12, 272
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 166, 288
BlsI GCNGC 2 cut(s) 167, 289
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 130, 241
Bse21I CCTNAGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 130, 241
BseMII CTCAG 2 cut(s) 42, 183
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 2 cut(s) 246, 287
BsiHKAI GWGCWC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 246, 287
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 126, 223
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 288
BspANI GGCC 2 cut(s) 246, 287
BspCNI CTCAG 2 cut(s) 41, 184
BspPI GGATC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 130, 241
BssMI GATC 2 cut(s) 126, 223
BssT1I CCWWGG 2 cut(s) 130, 241
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 28, 192
BstDSI CCRYGG 1 cut(s) 130
BstKTI GATC 2 cut(s) 129, 226
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 126, 223
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 246, 287
BtgI CCRYGG 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 144
Csp6I GTAC 1 cut(s) 236
CviAII CATG 2 cut(s) 43, 131
CviJI RGCY 4 cut(s) 32, 107, 246, 287
CviKI_1 RGCY 4 cut(s) 32, 107, 246, 287
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 28, 192
DpnI GATC 2 cut(s) 128, 225
DpnII GATC 2 cut(s) 126, 223
DraIII CACNNNGTG 1 cut(s) 52
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 130, 241
Eco31I GGTCTC 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 130, 241
ErhI CCWWGG 2 cut(s) 130, 241
FaeI CATG 2 cut(s) 46, 134
FaiI YATR 5 cut(s) 44, 58, 98, 132, 298
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 42, 130
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 166, 288
Fsp4HI GCNGC 2 cut(s) 166, 288
FspBI CTAG 2 cut(s) 12, 272
GluI GCNGC 2 cut(s) 166, 288
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 246, 287
Hin1II CATG 2 cut(s) 46, 134
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaI GTTAAC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 191, 272
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 46, 68, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 28, 192
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 46, 134
Ksp22I TGATCA 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 126, 223
LpnPI CCDG 5 cut(s) 93, 131, 158, 168, 204
Lsp1109I GCAGC 1 cut(s) 177
MabI ACCWGGT 1 cut(s) 144
MaeI CTAG 2 cut(s) 12, 272
MaeII ACGT 1 cut(s) 279
MalI GATC 2 cut(s) 128, 225
MboI GATC 2 cut(s) 126, 223
MhlI GDGCHC 1 cut(s) 279
MnlI CCTC 2 cut(s) 187, 241
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 4 cut(s) 74, 114, 204, 213
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 126, 223
NlaIII CATG 2 cut(s) 46, 134
NmeAIII GCCGAG 1 cut(s) 272
PctI GAATGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 167, 289
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 4 cut(s) 74, 114, 204, 213
SatI GCNGC 2 cut(s) 166, 288
Sau3AI GATC 2 cut(s) 126, 223
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 279
SetI ASST 4 cut(s) 34, 109, 150, 282
SexAI ACCWGGT 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 179
SsiI CCGC 1 cut(s) 288
SspMI CTAG 2 cut(s) 12, 272
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 130, 241
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 282
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 74, 114, 204, 213
Tru9I TTAA 4 cut(s) 74, 114, 204, 213
TseI GCWGC 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 12, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.