Rh3BG360600

Serine hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011279
Physical Location & Seq
Reverse (-)
43529006 .. 43529311
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG360600.1

Sequence Viewer

Length: 306 bp
ATGACAATGGACTTGACTAGGCACACCCATCACTCAGCTTGGCACACCATGCACAATGTGATATGTGGGGGTGCAAAGTTAATGGAATGCTACTTGGAAGTTATAGGCAAAGCTGGGGTTAAAGTGTCTGTGATCCATGGAGATAGAGACCAGGTTGTCCCTGTAGAGTGCAGCAACAACATTCAGATGACAGTTCCTGAGGCACAAGTTAACATCATTAAAAATGCTGATCATTCCTCTGTACTCCTTGGCCGAGAGAAAGACTTCACTCTCCATCTAGAGCACGTTTGGGCCGCTTCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

6.27

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17720 AT5G17780 AT5G17780
fragaria_vesca FvH4_2g19930 FvH4_2g19930 FvH4_2g19930
malus_domestica MD12G1013100.v1.1
prunus_persica Prupe.7G017500_v2.0.a1
pyrus_communis pycom12g01040
rosa_chinensis RchiOBHm_Chr3g0495891
rosa_laevigata RLG00000022582
rosa_multiflora Rmu_sc0012596.1_g000001
rosa_roxburghii Rroxscaffold_6G00389940
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324600 Rh3BG360600 Rh3BG360700 Rh3CG356800 Rh3DG359800
rosa_wichuraiana Rw3G028360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 250
AdeI CACNNNGTG 1 cut(s) 58
AfaI GTAC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 38, 113
AluI AGCT 2 cut(s) 38, 113
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 250, 291
ApeKI GCWGC 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 291
AxyI CCTNAGG 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 36, 282
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 18, 278
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 172, 294
BlsI GCNGC 2 cut(s) 173, 295
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 136, 247
Bse21I CCTNAGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 136, 247
BseMII CTCAG 2 cut(s) 48, 189
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 2 cut(s) 252, 293
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 2 cut(s) 252, 293
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 132, 229
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 294
BspANI GGCC 2 cut(s) 252, 293
BspCNI CTCAG 2 cut(s) 47, 190
BspPI GGATC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 136, 247
BssMI GATC 2 cut(s) 132, 229
BssT1I CCWWGG 2 cut(s) 136, 247
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 193
BstAPI GCANNNNNTGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 34, 198
BstDSI CCRYGG 1 cut(s) 136
BstKTI GATC 2 cut(s) 135, 232
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 132, 229
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 252, 293
BtgI CCRYGG 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 291
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 49, 137
CviJI RGCY 4 cut(s) 38, 113, 252, 293
CviKI_1 RGCY 4 cut(s) 38, 113, 252, 293
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 34, 198
DpnI GATC 2 cut(s) 134, 231
DpnII GATC 2 cut(s) 132, 229
DraIII CACNNNGTG 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 136, 247
Eco31I GGTCTC 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 136, 247
ErhI CCWWGG 2 cut(s) 136, 247
FaeI CATG 2 cut(s) 52, 140
FaiI YATR 5 cut(s) 50, 64, 104, 138, 304
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 48, 136
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 172, 294
Fsp4HI GCNGC 2 cut(s) 172, 294
FspBI CTAG 2 cut(s) 18, 278
GluI GCNGC 2 cut(s) 172, 294
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 252, 293
Hin1II CATG 2 cut(s) 52, 140
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HpaI GTTAAC 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 197, 278
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 52, 74, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 34, 198
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 52, 140
Ksp22I TGATCA 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 2 cut(s) 132, 229
LpnPI CCDG 5 cut(s) 99, 137, 164, 174, 210
Lsp1109I GCAGC 1 cut(s) 183
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 2 cut(s) 18, 278
MaeII ACGT 1 cut(s) 285
MalI GATC 2 cut(s) 134, 231
MboI GATC 2 cut(s) 132, 229
MhlI GDGCHC 1 cut(s) 285
MnlI CCTC 2 cut(s) 193, 247
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 4 cut(s) 80, 120, 210, 219
MslI CAYNNNNRTG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 49
NcoI CCATGG 1 cut(s) 136
NdeII GATC 2 cut(s) 132, 229
NlaIII CATG 2 cut(s) 52, 140
NmeAIII GCCGAG 1 cut(s) 278
PctI GAATGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 173, 295
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 4 cut(s) 80, 120, 210, 219
SatI GCNGC 2 cut(s) 172, 294
Sau3AI GATC 2 cut(s) 132, 229
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 40, 115, 156, 288
SexAI ACCWGGT 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 185
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 18, 278
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 136, 247
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 288
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 4 cut(s) 80, 120, 210, 219
Tru9I TTAA 4 cut(s) 80, 120, 210, 219
TseI GCWGC 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 2 cut(s) 18, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.