Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004619

Physical Location & Seq

Genomic Coordinates Forward (+)

6061298 .. 6063372

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTCATGGGAGATATGATACTTACAAGAAGAAAAGTGGACAGATTCCTCGGTTTGGAGAATGGGAAGAAGCAAATGAGATGCCAATAACACAATACTTTGAGAATCCAAGACAAGCTGAAGCCTTAAAGCTTGCTTCTCACCATCCCCGTCCACGTCACCTCCACGCTCAAAGACAGACGGCGGGGACGAAGGAGAAAAGAGGACCACAAAGGCGTGTGCGTGACGTCAGTGCACAGTCGGACAAGTATTACATTGACGTCAACGGTGTTAAGCAGTTCAAAAACGACGTTGCTCTGACTTGTAAGCCACCTAAGCCCGTTGATGAAGATCTCTACAAGATTCCTCCTGAGTTTATCCATTCTTCAACAAGGAAGAGAAGGCCTAGCTTTTTAGCTTGTTTGGTTCCATGCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

16.11

Weight (kDa)

9.71

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18310 AT5G18310 AT5G18310 AT5G18310
fragaria_vesca	FvH4_6g01200 FvH4_6g01210
malus_domestica	MD04G1235700.v1.1 MD12G1253400.v1.1
prunus_persica	Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1
pyrus_communis	pycom04g20920 pycom12g23250
rosa_chinensis	RchiOBHm_Chr3g0448791
rosa_laevigata	RLG00000025874
rosa_multiflora	Rmu_sc0003116.1_g000026
rosa_roxburghii	Rroxscaffold_6G00427000
rosa_rugosa	Rorug02G0616400
rosa_samantha	Rh3AG014700 Rh3BG014500 Rh3CG013400 Rh3DG015000
rosa_wichuraiana	Rw3G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	231, 264
Acc16I	TGCGCA	1 cut(s)	415
AciI	CCGC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	2 cut(s)	228, 261
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	283, 369
AjiI	CACGTC	1 cut(s)	158
AluBI	AGCT	4 cut(s)	119, 133, 390, 398
AluI	AGCT	4 cut(s)	119, 133, 390, 398
Alw21I	GWGCWC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	383
ApaLI	GTGCAC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	134, 152
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	408
BmsI	GCATC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	2 cut(s)	228, 261
BsaJI	CCNNGG	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	2 cut(s)	228, 261
Bst4CI	ACNGT	2 cut(s)	240, 269
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	228, 261
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	315, 351
BstF5I	GGATG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	3 cut(s)	8, 411, 417
CviJI	RGCY	9 cut(s)	5, 119, 125, 133, 310, 319, 385, 390, 398
CviKI_1	RGCY	9 cut(s)	5, 119, 125, 133, 310, 319, 385, 390, 398
DdeI	CTNAG	2 cut(s)	315, 351
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	141
FaeI	CATG	3 cut(s)	11, 414, 420
FaiI	YATR	4 cut(s)	9, 18, 412, 418
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	3 cut(s)	7, 410, 416
FauI	CCCGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	132
FspAI	RTGCGCAY	1 cut(s)	415
FspBI	CTAG	1 cut(s)	387
FspI	TGCGCA	1 cut(s)	415
GlaI	GCGC	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	2 cut(s)	228, 261
Hin1II	CATG	3 cut(s)	11, 414, 420
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	46, 106, 343
HphI	GGTGA	2 cut(s)	134, 152
Hpy166II	GTNNAC	4 cut(s)	41, 155, 236, 265
Hpy188I	TCNGA	2 cut(s)	244, 300
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	4 cut(s)	41, 155, 236, 265
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	187, 375
HpyCH4III	ACNGT	2 cut(s)	240, 269
HpyCH4IV	ACGT	4 cut(s)	157, 228, 261, 291
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	2 cut(s)	315, 351
HpySE526I	ACGT	4 cut(s)	157, 228, 261, 291
Hsp92I	GRCGYC	2 cut(s)	228, 261
Hsp92II	CATG	3 cut(s)	11, 414, 420
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	1 cut(s)	363
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	4 cut(s)	157, 228, 261, 291
MaeIII	GTNAC	2 cut(s)	158, 224
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	5 cut(s)	43, 80, 341, 357, 388
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	60, 173, 197, 357
MseI	TTAA	2 cut(s)	128, 273
MslI	CAYNNNNRTG	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	3 cut(s)	11, 414, 420
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	158, 224
NsbI	TGCGCA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	46, 106, 343
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	128, 273
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	415
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	240, 269
TaiI	ACGT	4 cut(s)	160, 231, 264, 294
TfiI	GAWTC	3 cut(s)	46, 106, 343
Tru1I	TTAA	2 cut(s)	128, 273
Tru9I	TTAA	2 cut(s)	128, 273
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	158, 224
Tsp45I	GTSAC	2 cut(s)	158, 224
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	1 cut(s)	387
ZraI	GACGTC	2 cut(s)	229, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.