Rorug02G0616400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004619
Physical Location & Seq
Forward (+)
73465135 .. 73469902
4768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0616400.1

Sequence Viewer

Length: 1539 bp
ATGGGGTTTCTAGGTGGCATTTTGAGGAAATTGGGCAGCCGTTCCATTGTCAGTAACATGGGGCCAAAGTTGAATTTGGGCACAAAGATGCATTGCTCATTTGGGACTCTGACCAGAAAAAACATTTTTCTGGAAGATATTAAGCAAGAGGGCACATTGGAGCAAAAGAAAGCTTGCTTGAAAGGGCTCCTTCATGAAATGGTATGGAGAATGAGGAGGGGCATTCAAGGAGGATGCACAGATCCGGAACAGATTCCCGTAATTTATCACAGAGCTTACTTGCCAGACGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCATGAGAATGATCAAATGAGTTCAAGGGACAGCATGAAGTTTGAAGATTTCAAGATTTACACGAGCTTATTGAGCAACATAAGGCATCTTGTACTGTTAGCTGGGCATCCTCATCTACAAACAACAGTGCAAGAGGTAGCATACATACCAGCAGCACTTCACCAAATGGATTTGATTCCTGCCAAACCAAATGGCTTATATCCATACCGGCACTTCCCACTTCCCCGCCCCAATTGCCATCAAGTTCCAAGAGCATTGGCATTTACAACTCCAGAGAAACATCTACACCAGTGGCAGGATGCTTATAGGAGAGTGTGTGTCAATAGGAGGGTCCACATTGCACAGTCAATTGCAAGTGCTGGCAAAGAGTTTCATGAAGTGTACAACTACCATAGCTCATTCAAGACAGCAGGATACAACGATCATGATCCCATAGATGAGTTACAATATTTTAGCAATGTGATCAAGCACTTAGATAATGAGACAGTTTACTCCTCGCATGACATGTTTCCATACAACACCATGGAGATGTTCAAATTCCATTGGTGCTATGATAGGCATGCTATGGAGACAATTAACCTCGAAAACATCCAGCAGCAGGAGGAGGTGGAGGAGGAGGTGGAGCCTTTTGTTGTGTTTGAGGATGTTGCTATGGAGCAGGAAGGAAAACTTAATTGTGATGCATCTGTCCTTGATAATGGAAATCAGGTGGGCATAGGTTGTGTTATAAGGGGCAGTGATGGTGAACTGCTACTTGCGGTGGGTGAGCGGCTCCAAAGCCGCCTTAAGCCTTGTGTTGCTGAGTTGCAGGCAGTGATCCTGGGGCTTGAGATGATGATAGAGCATGGTTGGCGGCCTGAGAGGGTGGAAACCGATTGTTTGGAGGCTGTTAATTTGATAAACAGGGAGGAGGATTGTCTGGCAGGGGAAGGAGTGTTAGTAGAGAAGATTAAATTCTTACTGGGGTATGTCGGTATTCGAAGTGTTCATCATGTTTCTAGGGTGGCAAATGGTGCTGCTCATGGTGTTGCTCAGTTTGTAGCCCGGTTAAATGGGCGTCATAGTTGGTTCGGGATTGGGCCCTCTTGGCTCATGGATGTCATCGGTGATGATAGACCCGTAACTCGTTCTAGTAGGGAAGAGAGTGGGGAATTTTCCTCCACCGATTTTTCCCATATGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

512

Amino Acids

58.3

Weight (kDa)

6.03

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 343 - 464 5.5e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AccBSI CCGCTC 1 cut(s) 1123
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 5 cut(s) 580, 1112, 1123, 1135, 1207
AclWI GGATC 3 cut(s) 236, 776, 1165
AcsI RAATTY 4 cut(s) 73, 890, 1307, 1505
AcyI GRCGYC 1 cut(s) 1411
AfaI GTAC 2 cut(s) 447, 737
AfiI CCNNNNNNNGG 2 cut(s) 649, 952
AflII CTTAAG 1 cut(s) 1139
AflIII ACRYGT 1 cut(s) 858
AgsI TTSAA 8 cut(s) 73, 181, 227, 378, 398, 406, 757, 889
AjnI CCWGG 1 cut(s) 1173
AluBI AGCT 6 cut(s) 173, 275, 318, 420, 455, 750
AluI AGCT 6 cut(s) 173, 275, 318, 420, 455, 750
Alw26I GTCTC 3 cut(s) 284, 830, 917
AlwI GGATC 3 cut(s) 236, 776, 1165
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 3 cut(s) 62, 1208, 1433
ApaI GGGCCC 1 cut(s) 1437
ApeKI GCWGC 4 cut(s) 36, 506, 949, 1370
ApoI RAATTY 4 cut(s) 73, 890, 1307, 1505
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 4 cut(s) 62, 685, 1433, 1434
AsuC2I CCSGG 1 cut(s) 1399
AsuHPI GGTGA 4 cut(s) 506, 1109, 1130, 1472
AsuII TTCGAA 1 cut(s) 1333
AvaII GGWCC 1 cut(s) 685
BaeGI GKGCMC 3 cut(s) 83, 155, 1437
BanII GRGCYC 2 cut(s) 189, 1437
BauI CACGAG 1 cut(s) 415
BbvI GCAGC 4 cut(s) 48, 518, 961, 1357
BccI CCATC 2 cut(s) 600, 1088
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 1175
BciVI GTATCC 1 cut(s) 761
BclI TGATCA 2 cut(s) 364, 816
BcnI CCSGG 1 cut(s) 1399
BcoDI GTCTC 3 cut(s) 284, 830, 917
BfaI CTAG 4 cut(s) 11, 315, 1353, 1485
BfrI CTTAAG 1 cut(s) 1139
BfuI GTATCC 1 cut(s) 761
BglI GCCNNNNNGGC 1 cut(s) 1441
BglII AGATCT 1 cut(s) 337
BisI GCNGC 7 cut(s) 37, 507, 950, 1124, 1135, 1208, 1371
BlsI GCNGC 7 cut(s) 38, 508, 951, 1125, 1136, 1209, 1372
Bme1390I CCNGG 2 cut(s) 1175, 1399
Bme18I GGWCC 1 cut(s) 685
BmgT120I GGNCC 4 cut(s) 62, 685, 1433, 1434
BmiI GGNNCC 6 cut(s) 63, 188, 686, 978, 1127, 1435
BmrFI CCNGG 2 cut(s) 1175, 1399
BmrI ACTGGG 1 cut(s) 1325
BmsI GCATC 7 cut(s) 78, 224, 448, 469, 643, 1024, 1046
BmuI ACTGGG 1 cut(s) 1325
BpmI CTGGAG 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 1333
BpuEI CTTGAG 1 cut(s) 1202
BpuMI CCSGG 1 cut(s) 1399
BsaBI GATNNNNATC 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 1411
BsaJI CCNNGG 2 cut(s) 876, 1174
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 4 cut(s) 655, 685, 1278, 1308
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 952
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 643, 1320
Bse3DI GCAATG 3 cut(s) 91, 690, 817
Bse8I GATNNNNATC 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 1175
BseDI CCNNGG 2 cut(s) 876, 1174
BseGI GGATG 6 cut(s) 239, 460, 658, 942, 1003, 1456
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 2 cut(s) 649, 952
BseMI GCAATG 3 cut(s) 91, 690, 817
BseMII CTCAG 3 cut(s) 1146, 1203, 1400
BseNI ACTGG 2 cut(s) 643, 1320
BseRI GAGGAG 6 cut(s) 229, 838, 971, 980, 983, 1277
BseSI GKGCMC 3 cut(s) 83, 155, 1437
BseXI GCAGC 4 cut(s) 48, 518, 961, 1357
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 3 cut(s) 64, 1210, 1435
BsiSI CCGG 3 cut(s) 245, 562, 1399
BslFI GGGAC 2 cut(s) 118, 395
BslI CCNNNNNNNGG 2 cut(s) 649, 952
BsmAI GTCTC 3 cut(s) 284, 830, 917
BsmFI GGGAC 2 cut(s) 118, 395
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 64, 1210, 1435
Bsp119I TTCGAA 1 cut(s) 1333
Bsp120I GGGCCC 1 cut(s) 1433
Bsp1286I GDGCHC 4 cut(s) 83, 155, 189, 1437
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 5 cut(s) 580, 1112, 1123, 1135, 1207
BspANI GGCC 3 cut(s) 64, 1210, 1435
BspCNI CTCAG 3 cut(s) 1147, 1204, 1399
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 4 cut(s) 193, 355, 727, 778
BspLI GGNNCC 6 cut(s) 63, 188, 686, 978, 1127, 1435
BspPI GGATC 3 cut(s) 236, 776, 1165
BspT104I TTCGAA 1 cut(s) 1333
BspTI CTTAAG 1 cut(s) 1139
BsrBI CCGCTC 1 cut(s) 1123
BsrDI GCAATG 3 cut(s) 91, 690, 817
BsrFI RCCGGY 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 2 cut(s) 643, 1320
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 876, 1174
BssMI GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
BssNI GRCGYC 1 cut(s) 1411
BssSI CACGAG 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 1175
Bst4CI ACNGT 4 cut(s) 450, 481, 699, 841
Bst6I CTCTTC 1 cut(s) 1488
BstACI GRCGYC 1 cut(s) 1411
BstAFI CTTAAG 1 cut(s) 1139
BstAPI GCANNNNNTGC 1 cut(s) 1367
BstAUI TGTACA 1 cut(s) 735
BstBI TTCGAA 1 cut(s) 1333
BstC8I GCNNGC 4 cut(s) 175, 715, 915, 1164
BstDEI CTNAG 4 cut(s) 826, 1155, 1212, 1386
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 6 cut(s) 239, 460, 658, 942, 1003, 1456
BstKTI GATC 7 cut(s) 244, 340, 367, 778, 784, 819, 1173
BstMAI GTCTC 3 cut(s) 284, 830, 917
BstMBI GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
BstMWI GCNNNNNNNGC 5 cut(s) 426, 588, 1204, 1367, 1441
BstNI CCWGG 1 cut(s) 1175
BstNSI RCATGY 2 cut(s) 862, 917
BstSCI CCNGG 2 cut(s) 1173, 1397
BstSLI GKGCMC 3 cut(s) 83, 155, 1437
BstV1I GCAGC 4 cut(s) 48, 518, 961, 1357
BstX2I RGATCY 2 cut(s) 241, 337
BstYI RGATCY 2 cut(s) 241, 337
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 3 cut(s) 64, 1210, 1435
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 6 cut(s) 239, 460, 658, 942, 1003, 1456
BtsI GCAGTG 2 cut(s) 1096, 1173
BtsIMutI CAGTG 4 cut(s) 486, 650, 1096, 1173
Cac8I GCNNGC 4 cut(s) 175, 715, 915, 1164
CciI TCATGA 4 cut(s) 193, 355, 727, 778
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 4 cut(s) 62, 685, 1433, 1434
CseI GACGC 1 cut(s) 1400
Csp6I GTAC 2 cut(s) 446, 736
CviQI GTAC 2 cut(s) 446, 736
DdeI CTNAG 4 cut(s) 826, 1155, 1212, 1386
DpnI GATC 7 cut(s) 243, 339, 366, 777, 783, 818, 1172
DpnII GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
Eam1104I CTCTTC 1 cut(s) 1488
EarI CTCTTC 1 cut(s) 1488
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 2 cut(s) 189, 1437
Eco47I GGWCC 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 1434
EcoRII CCWGG 1 cut(s) 1173
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 2 cut(s) 93, 1039
EcoT38I GRGCYC 2 cut(s) 189, 1437
ErhI CCWWGG 1 cut(s) 876
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 1008, 1040
FaqI GGGAC 2 cut(s) 118, 395
FauI CCCGC 1 cut(s) 587
FauNDI CATATG 2 cut(s) 295, 1530
FbaI TGATCA 2 cut(s) 364, 816
Fnu4HI GCNGC 7 cut(s) 37, 507, 950, 1124, 1135, 1208, 1371
FokI GGATG 6 cut(s) 246, 447, 665, 929, 1010, 1463
FriOI GRGCYC 2 cut(s) 189, 1437
Fsp4HI GCNGC 7 cut(s) 37, 507, 950, 1124, 1135, 1208, 1371
FspBI CTAG 4 cut(s) 11, 315, 1353, 1485
GluI GCNGC 7 cut(s) 37, 507, 950, 1124, 1135, 1208, 1371
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 3 cut(s) 64, 1210, 1435
HapII CCGG 3 cut(s) 245, 562, 1399
HgaI GACGC 1 cut(s) 1400
Hin1I GRCGYC 1 cut(s) 1411
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 106, 253, 529
HpaII CCGG 3 cut(s) 245, 562, 1399
HphI GGTGA 4 cut(s) 506, 1109, 1130, 1472
Hpy166II GTNNAC 4 cut(s) 688, 736, 844, 1100
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 4 cut(s) 688, 736, 844, 1100
HpyAV CCTTC 3 cut(s) 200, 1010, 1277
HpyCH4III ACNGT 4 cut(s) 450, 481, 699, 841
HpyCH4V TGCA 7 cut(s) 91, 237, 484, 695, 707, 1037, 1162
HpyF10VI GCNNNNNNNGC 5 cut(s) 426, 588, 1204, 1367, 1441
HpyF3I CTNAG 4 cut(s) 826, 1155, 1212, 1386
Hsp92I GRCGYC 1 cut(s) 1411
Kpn2I TCCGGA 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 364, 816
Kzo9I GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
LmnI GCTCC 5 cut(s) 160, 192, 976, 1009, 1131
Lsp1109I GCAGC 4 cut(s) 48, 518, 961, 1357
LweI GCATC 7 cut(s) 78, 224, 448, 469, 643, 1024, 1046
MaeI CTAG 4 cut(s) 11, 315, 1353, 1485
MaeIII GTNAC 3 cut(s) 53, 795, 1474
MalI GATC 7 cut(s) 243, 339, 366, 777, 783, 818, 1172
MbiI CCGCTC 1 cut(s) 1123
MboI GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
MboII GAAGA 5 cut(s) 146, 344, 410, 1312, 1505
MfeI CAATTG 2 cut(s) 586, 702
MflI RGATCY 2 cut(s) 241, 337
MhlI GDGCHC 4 cut(s) 83, 155, 189, 1437
MlyI GAGTC 1 cut(s) 100
Mph1103I ATGCAT 2 cut(s) 93, 1039
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 7 cut(s) 141, 930, 1026, 1140, 1245, 1305, 1403
MslI CAYNNNNRTG 4 cut(s) 86, 354, 360, 881
MspCI CTTAAG 1 cut(s) 1139
MspI CCGG 3 cut(s) 245, 562, 1399
MspR9I CCNGG 2 cut(s) 1175, 1399
MunI CAATTG 2 cut(s) 586, 702
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 1175
MwoI GCNNNNNNNGC 5 cut(s) 426, 588, 1204, 1367, 1441
NciI CCSGG 1 cut(s) 1399
NcoI CCATGG 1 cut(s) 876
NdeI CATATG 2 cut(s) 295, 1530
NdeII GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
NlaIV GGNNCC 6 cut(s) 63, 188, 686, 978, 1127, 1435
NsiI ATGCAT 2 cut(s) 93, 1039
NspI RCATGY 2 cut(s) 862, 917
NspV TTCGAA 1 cut(s) 1333
PaeI GCATGC 1 cut(s) 917
PagI TCATGA 4 cut(s) 193, 355, 727, 778
PciI ACATGT 1 cut(s) 858
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 253, 529
PkrI GCNGC 7 cut(s) 38, 508, 951, 1125, 1136, 1209, 1372
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 1 cut(s) 858
PsiI TTATAA 1 cut(s) 1082
Psp6I CCWGG 1 cut(s) 1173
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 1173
PspN4I GGNNCC 6 cut(s) 63, 188, 686, 978, 1127, 1435
PspOMI GGGCCC 1 cut(s) 1433
PspPI GGNCC 4 cut(s) 62, 685, 1433, 1434
PsuI RGATCY 2 cut(s) 241, 337
RsaI GTAC 2 cut(s) 447, 737
RsaNI GTAC 2 cut(s) 446, 736
RseI CAYNNNNRTG 4 cut(s) 86, 354, 360, 881
SaqAI TTAA 7 cut(s) 141, 930, 1026, 1140, 1245, 1305, 1403
SatI GCNGC 7 cut(s) 37, 507, 950, 1124, 1135, 1208, 1371
Sau3AI GATC 7 cut(s) 241, 337, 364, 775, 781, 816, 1170
Sau96I GGNCC 4 cut(s) 62, 685, 1433, 1434
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 1175, 1399
SduI GDGCHC 4 cut(s) 83, 155, 189, 1437
SfaNI GCATC 7 cut(s) 78, 224, 448, 469, 643, 1024, 1046
SfuI TTCGAA 1 cut(s) 1333
SinI GGWCC 1 cut(s) 685
SmiMI CAYNNNNRTG 4 cut(s) 86, 354, 360, 881
SmlI CTYRAG 2 cut(s) 1139, 1181
SmoI CTYRAG 2 cut(s) 1139, 1181
SphI GCATGC 1 cut(s) 917
SsiI CCGC 5 cut(s) 580, 1112, 1123, 1135, 1207
SspI AATATT 1 cut(s) 803
SspMI CTAG 4 cut(s) 11, 315, 1353, 1485
StyD4I CCNGG 2 cut(s) 1173, 1397
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 4 cut(s) 450, 481, 699, 841
TaqI TCGA 2 cut(s) 936, 1333
TatI WGTACW 2 cut(s) 445, 735
TauI GCSGC 3 cut(s) 1126, 1137, 1210
TfiI GAWTC 2 cut(s) 253, 529
Tru1I TTAA 7 cut(s) 141, 930, 1026, 1140, 1245, 1305, 1403
Tru9I TTAA 7 cut(s) 141, 930, 1026, 1140, 1245, 1305, 1403
TscAI CASTG 4 cut(s) 486, 650, 1096, 1173
TseI GCWGC 4 cut(s) 36, 506, 949, 1370
TspDTI ATGAA 8 cut(s) 182, 210, 338, 344, 404, 716, 744, 1331
TspRI CASTG 4 cut(s) 486, 650, 1096, 1173
Vha464I CTTAAG 1 cut(s) 1139
VpaK11BI GGWCC 1 cut(s) 685
XapI RAATTY 4 cut(s) 73, 890, 1307, 1505
XceI RCATGY 2 cut(s) 862, 917
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 4 cut(s) 11, 315, 1353, 1485
Zsp2I ATGCAT 2 cut(s) 93, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.