Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004619

Physical Location & Seq

Genomic Coordinates Reverse (-)

31454388 .. 31457309

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1235700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATGACTATTACAAGAGGAGTGGGCAGATTCCAGCGTTTGGAGACTGGGATTATGCAAACGATCTGCCAATCACTCAGTATTTCGAGTGTGCGAGACAAGCCGGTTTGATCAGATTCAGCTCTTCTTCTGGTGAAAGTGCTGATCATCCCTACAATCTGCGTCCTGACTTGTATGCTGTTCCTGTCGATCACTTCAAGAAGCCTTCTCGCAATGTTGCTCCTTCTCGAAAGGCAACAAGAGGAGTTGGTGGAGGAGGAGGAGGTGGAGGAGGGAGGGAAAAGCGAGGGCAGCGTGCGCATGTTATGGAGCAAAAGAGGCAGCAATCGAAGGTGGCAAAAGTCTGTGACGTGACCGAACCGCCAACTAAACCCTATCACTATCAACTCCATGTCCAACAACAACCCAATCGCACTCACCACCACCACCACCACCACCACGACACCGTTCCAAGAAGACCTCCCAAGCCTGTCGACGAAGATCTCTACAAAATACCCCCTGAGCTCCTCCACACTACCAAGCGGAAGAAAATGCTGAGAATGTTTGCTTGCTTGGTGCCTGCTTGTGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.69

Weight (kDa)

9.62

Isoelectric Point (pI)

70.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18310 AT5G18310 AT5G18310 AT5G18310
fragaria_vesca	FvH4_6g01200 FvH4_6g01210
malus_domestica	MD04G1235700.v1.1 MD12G1253400.v1.1
prunus_persica	Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1
pyrus_communis	pycom04g20920 pycom12g23250
rosa_chinensis	RchiOBHm_Chr3g0448791
rosa_laevigata	RLG00000025874
rosa_multiflora	Rmu_sc0003116.1_g000026
rosa_roxburghii	Rroxscaffold_6G00427000
rosa_rugosa	Rorug02G0616400
rosa_samantha	Rh3AG014700 Rh3BG014500 Rh3CG013400 Rh3DG015000
rosa_wichuraiana	Rw3G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	556
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	2 cut(s)	362, 523
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	352
AluBI	AGCT	2 cut(s)	123, 505
AluI	AGCT	2 cut(s)	123, 505
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	39, 91
ApeKI	GCWGC	2 cut(s)	292, 322
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	146, 410
BanI	GGYRCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	304, 334
BclI	TGATCA	2 cut(s)	111, 145
BcoDI	GTCTC	2 cut(s)	39, 91
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	2 cut(s)	293, 323
BlsI	GCNGC	2 cut(s)	294, 324
BmgBI	CACGTC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	558
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	10, 148
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	3 cut(s)	92, 492, 527
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	7 cut(s)	34, 258, 270, 273, 276, 285, 497
BseXI	GCAGC	2 cut(s)	304, 334
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	39, 91
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	64, 111, 145, 190, 481
BspACI	CCGC	2 cut(s)	362, 523
BspCNI	CTCAG	3 cut(s)	91, 493, 528
BspLI	GGNNCC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	5 cut(s)	64, 111, 145, 190, 481
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	297, 550, 561
BstDEI	CTNAG	3 cut(s)	78, 501, 536
BstF5I	GGATG	2 cut(s)	10, 148
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	5 cut(s)	67, 114, 148, 193, 484
BstMAI	GTCTC	2 cut(s)	39, 91
BstMBI	GATC	5 cut(s)	64, 111, 145, 190, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 292, 298, 319
BstNSI	RCATGY	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	304, 334
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	10, 148
Cac8I	GCNNGC	3 cut(s)	297, 550, 561
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	1 cut(s)	152
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	2 cut(s)	302, 392
CviJI	RGCY	5 cut(s)	104, 123, 205, 469, 505
CviKI_1	RGCY	5 cut(s)	104, 123, 205, 469, 505
DdeI	CTNAG	3 cut(s)	78, 501, 536
DpnI	GATC	5 cut(s)	66, 113, 147, 192, 483
DpnII	GATC	5 cut(s)	64, 111, 145, 190, 481
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	2 cut(s)	305, 395
FaiI	YATR	5 cut(s)	57, 177, 303, 308, 393
FatI	CATG	2 cut(s)	301, 391
FbaI	TGATCA	2 cut(s)	111, 145
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	293, 323
FokI	GGATG	2 cut(s)	17, 135
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	2 cut(s)	293, 323
FspAI	RTGCGCAY	1 cut(s)	300
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	293, 323
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	305, 395
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	31, 117
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	146, 410
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	4 cut(s)	167, 199, 228, 573
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	3 cut(s)	216, 234, 325
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	59, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 292, 298, 319
HpyF3I	CTNAG	3 cut(s)	78, 501, 536
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	305, 395
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	2 cut(s)	111, 145
Kzo9I	GATC	5 cut(s)	64, 111, 145, 190, 481
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	3 cut(s)	226, 310, 510
LpnPI	CCDG	8 cut(s)	34, 48, 117, 118, 180, 198, 483, 513
Lsp1109I	GCAGC	2 cut(s)	304, 334
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	347, 352
MalI	GATC	5 cut(s)	66, 113, 147, 192, 483
MboI	GATC	5 cut(s)	64, 111, 145, 190, 481
MboII	GAAGA	5 cut(s)	117, 120, 468, 491, 538
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	421
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	101, 292, 298, 319
NdeII	GATC	5 cut(s)	64, 111, 145, 190, 481
NlaIII	CATG	2 cut(s)	305, 395
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	347, 352
NsbI	TGCGCA	1 cut(s)	300
NspI	RCATGY	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	31, 117
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	294, 324
Psp124BI	GAGCTC	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	473
SapI	GCTCTTC	1 cut(s)	130
SatI	GCNGC	2 cut(s)	293, 323
Sau3AI	GATC	5 cut(s)	64, 111, 145, 190, 481
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	6 cut(s)	125, 268, 336, 354, 463, 507
SsiI	CCGC	2 cut(s)	362, 523
SstI	GAGCTC	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	5 cut(s)	87, 189, 229, 329, 474
TaqII	GACCGA	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	31, 117
TseFI	GTSAC	2 cut(s)	347, 352
TseI	GCWGC	2 cut(s)	292, 322
Tsp45I	GTSAC	2 cut(s)	347, 352
Van91I	CCANNNNNTGG	1 cut(s)	41
XceI	RCATGY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.