Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004619

Physical Location & Seq

Genomic Coordinates Forward (+)

670219 .. 671826

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGACTACTATAAACGGAGCGGTCAAATTCCGGCGTTTGGGGACTGGGATTATGCCAATGAGCTGCCAATCACTCAGTATTTTGAGTGTGCAAGGCAAGCTGGTTTGATCAGGTTCAGCTCTTCTTCTGGTGAGAGCGATGTTCCGGCAGCCTATCTGCATGCTGACTTGTATGCTGTTGATGTTAAGAAGATGAAGAAGAAGCCTTCTCGTGTTGTTGTTGCTCCTAATTCTCGAAAGACAACTGCAAGAGGGAGAGAAAAGAGATGCACTCAAAACCCGCATGTCAAGGAGCAAAAGAAGCAGCAGCATCAAGCTAAGGTCCATGACGAAGTGACTGAACCGTCAAAGCTACACTACCAGCAGTATCACACTCGCCGCAACGATGCCGTTTTGCGACCAAGGAGGCCTCCCAAGCCGGTTGATGAAGACCTCTACAAGATACCACCTGAGCTCCTTCACTCTACCAAGCGGAAGAAAATGCTGGGATTGTTCTCTTGCTTGGTGCCTGCTTGTGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

20.14

Weight (kDa)

9.6

Isoelectric Point (pI)

69.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18310 AT5G18310 AT5G18310 AT5G18310
fragaria_vesca	FvH4_6g01200 FvH4_6g01210
malus_domestica	MD04G1235700.v1.1 MD12G1253400.v1.1
prunus_persica	Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1
pyrus_communis	pycom04g20920 pycom12g23250
rosa_chinensis	RchiOBHm_Chr3g0448791
rosa_laevigata	RLG00000025874
rosa_multiflora	Rmu_sc0003116.1_g000026
rosa_roxburghii	Rroxscaffold_6G00427000
rosa_rugosa	Rorug02G0616400
rosa_samantha	Rh3AG014700 Rh3BG014500 Rh3CG013400 Rh3DG015000
rosa_wichuraiana	Rw3G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	508
AccBSI	CCGCTC	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 284, 382, 475
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	41
AluBI	AGCT	6 cut(s)	67, 104, 123, 320, 355, 457
AluI	AGCT	6 cut(s)	67, 104, 123, 320, 355, 457
Alw21I	GWGCWC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	67, 152, 307, 310
ApoI	RAATTY	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	459
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	54, 164, 319, 322
BceAI	ACGGC	1 cut(s)	377
BclI	TGATCA	1 cut(s)	111
BisI	GCNGC	5 cut(s)	68, 153, 308, 311, 382
BlsI	GCNGC	5 cut(s)	69, 154, 309, 312, 383
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	260, 322, 379
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
Bpu10I	CCTNAGC	2 cut(s)	321, 453
BsaJI	CCNNGG	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	92, 444
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	54, 164, 319, 322
BseYI	CCCAGC	1 cut(s)	487
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	35, 149, 422
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	24, 284, 382, 475
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	91, 445
BspHI	TCATGA	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	102, 165, 513
BstDEI	CTNAG	3 cut(s)	78, 321, 453
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 304, 418
BstNSI	RCATGY	2 cut(s)	167, 290
BstV1I	GCAGC	4 cut(s)	54, 164, 319, 322
BstV2I	GAAGAC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	412
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	102, 165, 513
CciI	TCATGA	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	4 cut(s)	164, 287, 329, 525
DdeI	CTNAG	3 cut(s)	78, 321, 453
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	404
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	4 cut(s)	167, 290, 332, 528
FaiI	YATR	7 cut(s)	15, 57, 165, 177, 288, 330, 526
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	163, 286, 328, 524
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	68, 153, 308, 311, 382
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	5 cut(s)	68, 153, 308, 311, 382
GluI	GCNGC	5 cut(s)	68, 153, 308, 311, 382
GsaI	CCCAGC	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	3 cut(s)	35, 149, 422
Hin1II	CATG	4 cut(s)	167, 290, 332, 528
HpaII	CCGG	3 cut(s)	35, 149, 422
HphI	GGTGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	237, 525
HpyAV	CCTTC	2 cut(s)	219, 470
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	95, 163, 251, 273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 304, 418
HpyF3I	CTNAG	3 cut(s)	78, 321, 453
Hsp92II	CATG	4 cut(s)	167, 290, 332, 528
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	4 cut(s)	21, 232, 295, 462
Lsp1109I	GCAGC	4 cut(s)	54, 164, 319, 322
LweI	GCATC	3 cut(s)	260, 322, 379
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	113
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	1 cut(s)	111
MboII	GAAGA	7 cut(s)	117, 120, 205, 211, 214, 443, 490
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	2 cut(s)	30, 232
MnlI	CCTC	4 cut(s)	248, 402, 423, 446
MseI	TTAA	1 cut(s)	189
MspI	CCGG	3 cut(s)	35, 149, 422
MwoI	GCNNNNNNNGC	3 cut(s)	101, 304, 418
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	4 cut(s)	167, 290, 332, 528
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	2 cut(s)	167, 290
PaeI	GCATGC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	130
PkrI	GCNGC	5 cut(s)	69, 154, 309, 312, 383
Psp124BI	GAGCTC	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	5 cut(s)	68, 153, 308, 311, 382
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	260, 322, 379
SinI	GGWCC	1 cut(s)	325
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	30, 232
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	4 cut(s)	24, 284, 382, 475
SstI	GAGCTC	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	30, 232
TauI	GCSGC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	67, 152, 307, 310
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	3 cut(s)	212, 444, 513
TspGWI	ACGGA	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	2 cut(s)	167, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.