Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004619

Physical Location & Seq

Genomic Coordinates Forward (+)

867529 .. 869204

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATGACTATTGTAAACGGAGCGGCCAAATTCCGGCGTTTGGGGACTGGGATTATGCCAATGAGCTGCCCATCACTCAGTATTTCGAGTGTGCGAGGCAAGCCGGTTTGATCAGGTTCAGCTCTTCTTCCGGTGAGAGTGATGCACAAGCAGCCTATCTGCATGCTGACTTGTATGCTGTTGATGTTAAGAAGATGAAGAAGAAGCCTTCTCGAATTGTTGCTCCCAATACTCGAAAGACAATTGCAAGAGGGAGAGAAAAGAGATCCACTCATAATCCGCATGTCAAGGAGCAAAAGAAGCAGCAGCAGCAAGCTAAGGTCTATGACGACGTGACTGAACCGCCAAGAAAGTTACACTACCAGCAGTATCACACTCGAAGCAAAGACACCGTTTGCGACCGAGTAGGCCTCCTAAGCCTGTTGACGAAGACCTCTACAAGATACCCCCTGAGCTACTTCGCACTACCAAGCGGAAGAAAATGCTGGGATTATTCTCTTGCTTGGTGCCTGCTTGTGCTTCATGAGTTTGGAATCCACAGGGAGGGGTTTCATTTGCTCATAGGAAAGGAAAGAATGCCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.57

Weight (kDa)

9.46

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18310 AT5G18310 AT5G18310 AT5G18310
fragaria_vesca	FvH4_6g01200 FvH4_6g01210
malus_domestica	MD04G1235700.v1.1 MD12G1253400.v1.1
prunus_persica	Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1
pyrus_communis	pycom04g20920 pycom12g23250
rosa_chinensis	RchiOBHm_Chr3g0448791
rosa_laevigata	RLG00000025874
rosa_multiflora	Rmu_sc0003116.1_g000026
rosa_roxburghii	Rroxscaffold_6G00427000
rosa_rugosa	Rorug02G0616400
rosa_samantha	Rh3AG014700 Rh3BG014500 Rh3CG013400 Rh3DG015000
rosa_wichuraiana	Rw3G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	507
AccBSI	CCGCTC	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 281, 344, 474
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	34, 41, 544
AjiI	CACGTC	1 cut(s)	334
AluBI	AGCT	4 cut(s)	67, 123, 317, 456
AluI	AGCT	4 cut(s)	67, 123, 317, 456
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	25, 409
ApeKI	GCWGC	5 cut(s)	67, 152, 304, 307, 310
ApoI	RAATTY	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	5 cut(s)	54, 164, 316, 319, 322
BccI	CCATC	1 cut(s)	80
BclI	TGATCA	1 cut(s)	111
BisI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
BlsI	GCNGC	6 cut(s)	26, 69, 154, 306, 309, 312
BmgBI	CACGTC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	4 cut(s)	256, 288, 396, 428
Bpu10I	CCTNAGC	3 cut(s)	318, 416, 452
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 41, 544
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	34, 41, 544
BseMII	CTCAG	2 cut(s)	92, 443
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	54, 164, 316, 319, 322
BseYI	CCCAGC	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	2 cut(s)	27, 411
BshNI	GGYRCC	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	403
BsiSI	CCGG	3 cut(s)	35, 105, 132
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	34, 41, 544
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	27, 411
Bsp143I	GATC	2 cut(s)	111, 266
BspACI	CCGC	4 cut(s)	24, 281, 344, 474
BspANI	GGCC	2 cut(s)	27, 411
BspCNI	CTCAG	2 cut(s)	91, 444
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	2 cut(s)	111, 266
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	102, 165, 315, 512
BstDEI	CTNAG	4 cut(s)	78, 318, 416, 452
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	114, 269
BstMBI	GATC	2 cut(s)	111, 266
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 152, 301, 310, 417
BstNSI	RCATGY	2 cut(s)	167, 287
BstV1I	GCAGC	5 cut(s)	54, 164, 316, 319, 322
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	27, 411
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	102, 165, 315, 512
CciI	TCATGA	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	104
CviAII	CATG	3 cut(s)	164, 284, 524
DdeI	CTNAG	4 cut(s)	78, 318, 416, 452
DpnI	GATC	2 cut(s)	113, 268
DpnII	GATC	2 cut(s)	111, 266
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	411
FaeI	CATG	3 cut(s)	167, 287, 527
FaiI	YATR	9 cut(s)	57, 165, 177, 276, 285, 327, 525, 563, 586
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	163, 283, 523
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
GluI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
GsaI	CCCAGC	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	27, 411
HapII	CCGG	3 cut(s)	35, 105, 132
Hin1II	CATG	3 cut(s)	167, 287, 527
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	1 cut(s)	534
HpaII	CCGG	3 cut(s)	35, 105, 132
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	17, 426
Hpy188III	TCNNGA	2 cut(s)	213, 524
Hpy8I	GTNNAC	2 cut(s)	17, 426
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	146, 163, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 152, 301, 310, 417
HpyF3I	CTNAG	4 cut(s)	78, 318, 416, 452
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	167, 287, 527
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 266
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	3 cut(s)	21, 229, 292
Lsp1109I	GCAGC	5 cut(s)	54, 164, 316, 319, 322
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	334, 354
MalI	GATC	2 cut(s)	113, 268
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	2 cut(s)	111, 266
MboII	GAAGA	7 cut(s)	117, 120, 205, 211, 214, 442, 489
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	3 cut(s)	30, 216, 243
MnlI	CCTC	5 cut(s)	90, 245, 422, 445, 538
MseI	TTAA	1 cut(s)	189
MspI	CCGG	3 cut(s)	35, 105, 132
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	101, 152, 301, 310, 417
NdeII	GATC	2 cut(s)	111, 266
NlaIII	CATG	3 cut(s)	167, 287, 527
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	2 cut(s)	167, 287
PaeI	GCATGC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	534
PkrI	GCNGC	6 cut(s)	26, 69, 154, 306, 309, 312
PspFI	CCCAGC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
Sau3AI	GATC	2 cut(s)	111, 266
SetI	ASST	8 cut(s)	69, 119, 125, 319, 324, 336, 437, 458
SfaNI	GCATC	1 cut(s)	133
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	30, 216, 243
SseBI	AGGCCT	1 cut(s)	411
SsiI	CCGC	4 cut(s)	24, 281, 344, 474
StuI	AGGCCT	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	87, 214, 235, 379
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	3 cut(s)	30, 216, 243
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	534
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	67, 152, 304, 307, 310
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	212, 512, 542
TspGWI	ACGGA	1 cut(s)	34
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	2 cut(s)	167, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.