Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004619

Physical Location & Seq

Genomic Coordinates Forward (+)

899418 .. 901707

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGACTATTGTAAACGGAGCGGCCAAATTCCGGCGTTTGGGGACTGGGATTATGCCAATGAGCTGCCAATCACTCAGTATTTCGAGTGTGCGAGGCAAGCCGGTTTGATCAGGTTCAGCTCTTCTTCCGGTGAGAGTGATGCACAAGCAGCCTATCTGCATGCTGACTTGTATGCTGTTGATGTTAAGAAGATGAAGAAGAAGCCTTCTCGTATTGTTGCTCCCAATACTCGAAAGACAATTGCAAGAGGGAGAGAAAAGAGATCCACTCATAATCCGCATGTCAAGGAGCAAAAGAAGCAGCAGCAGCAAGCTAAGGTCTATGACGACGTGACTGAACCGCCAAGAAAGTTGCACTACCAGCAGTATCACACTCGAAGCAAAGACACCGTTTTGCGACCGAGTAGGCCTCCTAAGCCTGTTGACGAAGACCTCTACAAGATACCCCCTGAGCTACTTCGCACTACCAAGCGGAAGAAAATGCTGGGATTATTCTCTTGCTTGGTGCCTGCTTGTGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

20.12

Weight (kDa)

9.65

Isoelectric Point (pI)

67.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18310 AT5G18310 AT5G18310 AT5G18310
fragaria_vesca	FvH4_6g01200 FvH4_6g01210
malus_domestica	MD04G1235700.v1.1 MD12G1253400.v1.1
prunus_persica	Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1 Prupe.6G355600_v2.0.a1
pyrus_communis	pycom04g20920 pycom12g23250
rosa_chinensis	RchiOBHm_Chr3g0448791
rosa_laevigata	RLG00000025874
rosa_multiflora	Rmu_sc0003116.1_g000026
rosa_roxburghii	Rroxscaffold_6G00427000
rosa_rugosa	Rorug02G0616400
rosa_samantha	Rh3AG014700 Rh3BG014500 Rh3CG013400 Rh3DG015000
rosa_wichuraiana	Rw3G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccBSI	CCGCTC	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 281, 344, 475
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	34, 41
AjiI	CACGTC	1 cut(s)	334
AluBI	AGCT	4 cut(s)	67, 123, 317, 457
AluI	AGCT	4 cut(s)	67, 123, 317, 457
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	25, 410
ApeKI	GCWGC	5 cut(s)	67, 152, 304, 307, 310
ApoI	RAATTY	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	54, 164, 316, 319, 322
BclI	TGATCA	1 cut(s)	111
BisI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
BlsI	GCNGC	6 cut(s)	26, 69, 154, 306, 309, 312
BmgBI	CACGTC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	4 cut(s)	256, 288, 397, 429
Bpu10I	CCTNAGC	3 cut(s)	318, 417, 453
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 41
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	34, 41
BseMII	CTCAG	2 cut(s)	92, 444
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	54, 164, 316, 319, 322
BseYI	CCCAGC	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	27, 412
BshNI	GGYRCC	1 cut(s)	508
BsiEI	CGRYCG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	35, 105, 132
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	34, 41
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	27, 412
Bsp143I	GATC	2 cut(s)	111, 266
BspACI	CCGC	4 cut(s)	24, 281, 344, 475
BspANI	GGCC	2 cut(s)	27, 412
BspCNI	CTCAG	2 cut(s)	91, 445
BspHI	TCATGA	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	2 cut(s)	111, 266
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	102, 165, 315, 513
BstDEI	CTNAG	4 cut(s)	78, 318, 417, 453
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	114, 269
BstMBI	GATC	2 cut(s)	111, 266
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 152, 301, 310, 364, 418
BstNSI	RCATGY	2 cut(s)	167, 287
BstV1I	GCAGC	5 cut(s)	54, 164, 316, 319, 322
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	27, 412
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	102, 165, 315, 513
CciI	TCATGA	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	104
CviAII	CATG	3 cut(s)	164, 284, 525
DdeI	CTNAG	4 cut(s)	78, 318, 417, 453
DpnI	GATC	2 cut(s)	113, 268
DpnII	GATC	2 cut(s)	111, 266
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	412
FaeI	CATG	3 cut(s)	167, 287, 528
FaiI	YATR	7 cut(s)	57, 165, 177, 276, 285, 327, 526
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	163, 283, 524
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
GluI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
GsaI	CCCAGC	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	27, 412
HapII	CCGG	3 cut(s)	35, 105, 132
Hin1II	CATG	3 cut(s)	167, 287, 528
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HpaII	CCGG	3 cut(s)	35, 105, 132
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	17, 427
Hpy188III	TCNNGA	1 cut(s)	525
Hpy8I	GTNNAC	2 cut(s)	17, 427
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	146, 163, 248, 358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 152, 301, 310, 364, 418
HpyF3I	CTNAG	4 cut(s)	78, 318, 417, 453
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	167, 287, 528
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 266
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	3 cut(s)	21, 229, 292
LpnPI	CCDG	9 cut(s)	34, 48, 100, 118, 145, 377, 435, 465, 473
Lsp1109I	GCAGC	5 cut(s)	54, 164, 316, 319, 322
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	113, 268
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	2 cut(s)	111, 266
MboII	GAAGA	7 cut(s)	117, 120, 205, 211, 214, 443, 490
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	2 cut(s)	30, 243
MnlI	CCTC	4 cut(s)	90, 245, 423, 446
MseI	TTAA	1 cut(s)	189
MspI	CCGG	3 cut(s)	35, 105, 132
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	6 cut(s)	101, 152, 301, 310, 364, 418
NdeII	GATC	2 cut(s)	111, 266
NlaIII	CATG	3 cut(s)	167, 287, 528
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	2 cut(s)	167, 287
PaeI	GCATGC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	130
PkrI	GCNGC	6 cut(s)	26, 69, 154, 306, 309, 312
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	6 cut(s)	25, 68, 153, 305, 308, 311
Sau3AI	GATC	2 cut(s)	111, 266
SetI	ASST	8 cut(s)	69, 119, 125, 319, 324, 336, 438, 459
SfaNI	GCATC	1 cut(s)	133
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	30, 243
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	4 cut(s)	24, 281, 344, 475
StuI	AGGCCT	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	87, 235, 379
TaqII	GACCGA	1 cut(s)	418
TasI	AATT	2 cut(s)	30, 243
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	67, 152, 304, 307, 310
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	212, 513
TspGWI	ACGGA	1 cut(s)	34
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	2 cut(s)	167, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.