AT5G18580

EF-hand domain pair

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6174972 .. 6178401
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18580.1

Sequence Viewer

Length: 1443 bp
ATGTATAGCGGATCTAGCGATGGTGAGAGTCATGATACATCGACGCAGAGGAAGATCCCACCGGCGTCTTCGATGCTTTGGGTTAGAAATCTACGACGATATATTGGTTCCGGTGCCGGATTAGGATCCGAAGCTCTAATGGAGCTTGAGACGAAGAGAATCTTGCTCGAGATTTTTAAAGAGAAGCAACAGAAAAGCCAAGAAGCAGGCACAATACCGAGTTTCTACAAGAAGAAACCAGAAGAAGGATCTATTAGTCAAAGGGTCCAGAAGCTTGCAAAGTACCGTTTCTTGAAGAAACAATCGGATCTTTTGTTAAACGCTGATGATTTGGCTGCTATGTGGGTTTGTTTGAGAGAAAATTGTGTGATTGATGATGCCACTGGTGCTGAAAAGATGAACTATGAAGACTTCTGTCACATTGCCTCTGTATGCACTGAACAAATCGGTCCCAAATGTCGCCGGTTTTTTAGCCCATCCAATTTCATGAAATTTGAGAAGGATGAGGCTGGGAGGATTGCCATTTTACCGTTTTATCTTTATGTGATGCGCACGGTGTCGCTTACACAAGCTAGGATTGATATGAGTGAGCTTGACGAAGACTCTGATGGTTTCCTTCATTCTGATGAAATGGAGTCCTATATTGGTGGTCTAATCCCTAATCTGGCACAACTGAGAGACATGCCTCCGGCCTTTAATCAAATGTATTGCCGCATAGCTTCACAAAAGTTTTTCTTCTTCTGTGATCCCCATAGGCGAGGAAGAGCCTGCATTAAAAAGATACTGCTCAGTAACTGTCTGCAGGAACTAATGGAATTGCATCAGGAAAGCGAGGAGGAAGTCACAGACACTGAACAGGCAGAAAATTGGTTCTCTTTGACTTCAGCCCAACGCATATGTGATATGTTCCTCGCACTTGATAAAGATATGAGTGGATCGCTGTGCAAACAAGAACTTAAAGAATATGCTGATGGGACCCTAACTGAGATTTTCATTGAAAGAGTGTTCGATGAGCATGTCCGCCGTGGTAAAATCGTGGCAGGCAATTCCCGGGAAATGGACTTTGACAGTTTCCTCGATTTTGTTCTTGCTTTGGAGAACAAAGATACTCCAGAGGGTTTGACGTATTTATTCCGTTGCCTTGATCTCCAAGGGAGAGGCTTTCTCACTACTGCTGATATTCACTCTCTTTTCAGAGATGTTCACCAGAAATGGATAGAAGGTGGGAACTATGAACTGTGCATAGAAGATGTTCGAGACGAGATCTGGGACATGGTGAAACCGTCTGACCCATTAAAGATCACTCTGGGTGATCTCTTGGGATGTAAACAAGGTGGAACCGTTGCGAGCATGCTTATAGATGTGCGTGGCTTCTGGGCTCATGACAACCGTGAGAACCTTCTTCAAGAAGAAGAAGAACCACCTGAGGAAGAGTCTCAGTGA

Protein Analysis

480

Amino Acids

55.07

Weight (kDa)

4.87

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011013)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 3 cut(s) 9, 712, 1021
AclWI GGATC 8 cut(s) 19, 49, 120, 133, 256, 315, 740, 943
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 245, 664, 1057
AgsI TTSAA 3 cut(s) 295, 998, 1406
AluBI AGCT 6 cut(s) 134, 145, 274, 572, 592, 719
AluI AGCT 6 cut(s) 134, 145, 274, 572, 592, 719
Alw26I GTCTC 3 cut(s) 143, 672, 1251
AlwI GGATC 8 cut(s) 19, 49, 120, 133, 256, 315, 740, 943
AlwNI CAGNNNCTG 2 cut(s) 795, 851
Ama87I CYCGRG 2 cut(s) 167, 1050
AoxI GGCC 1 cut(s) 690
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 491
Asp700I GAANNNNTTC 1 cut(s) 1251
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 3 cut(s) 265, 449, 975
AsuC2I CCSGG 2 cut(s) 1051, 1052
AsuHPI GGTGA 4 cut(s) 35, 1196, 1288, 1322
AvaI CYCGRG 2 cut(s) 167, 1050
AvaII GGWCC 3 cut(s) 265, 449, 975
AxyI CCTNAGG 1 cut(s) 1425
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 1381
BbsI GAAGAC 3 cut(s) 60, 414, 606
BbvI GCAGC 1 cut(s) 322
BccI CCATC 4 cut(s) 14, 484, 602, 965
BceAI ACGGC 1 cut(s) 1008
BcnI CCSGG 2 cut(s) 1051, 1052
BcoDI GTCTC 3 cut(s) 143, 672, 1251
BfaI CTAG 2 cut(s) 15, 573
BfmI CTRYAG 1 cut(s) 800
BglII AGATCT 1 cut(s) 1263
BisI GCNGC 2 cut(s) 336, 712
BlsI GCNGC 2 cut(s) 337, 713
Bme1390I CCNGG 2 cut(s) 1051, 1052
Bme18I GGWCC 3 cut(s) 265, 449, 975
BmeT110I CYCGRG 2 cut(s) 167, 1050
BmgT120I GGNCC 3 cut(s) 265, 449, 975
BmiI GGNNCC 8 cut(s) 109, 115, 127, 266, 451, 976, 977, 1339
BmrFI CCNGG 2 cut(s) 1051, 1052
BmsI GCATC 4 cut(s) 63, 367, 537, 829
BoxI GACNNNNGTC 1 cut(s) 414
BpiI GAAGAC 3 cut(s) 60, 414, 606
BplI GAGNNNNNCTC 2 cut(s) 1149, 1181
BpmI CTGGAG 1 cut(s) 1095
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 1051, 1052
BsaBI GATNNNNATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 1024, 1050, 1150
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 664, 1057
Bse118I RCCGGY 2 cut(s) 61, 462
Bse1I ACTGG 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 1425
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 124
BseDI CCNNGG 3 cut(s) 1024, 1050, 1150
BseGI GGATG 3 cut(s) 476, 508, 1328
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 245, 664, 1057
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 4 cut(s) 665, 802, 975, 1416
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 848
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 1 cut(s) 692
BshNI GGYRCC 1 cut(s) 113
BsiHKCI CYCGRG 2 cut(s) 167, 1050
BsiSI CCGG 6 cut(s) 62, 111, 117, 463, 689, 1051
BslFI GGGAC 3 cut(s) 435, 988, 1283
BslI CCNNNNNNNGG 3 cut(s) 245, 664, 1057
BsmAI GTCTC 3 cut(s) 143, 672, 1251
BsmBI CGTCTC 2 cut(s) 143, 1251
BsmFI GGGAC 3 cut(s) 435, 988, 1283
BsnI GGCC 1 cut(s) 692
BsoBI CYCGRG 2 cut(s) 167, 1050
Bsp1286I GDGCHC 1 cut(s) 1381
BspACI CCGC 3 cut(s) 9, 712, 1021
BspANI GGCC 1 cut(s) 692
BspCNI CTCAG 4 cut(s) 666, 801, 976, 1417
BspHI TCATGA 3 cut(s) 31, 486, 1381
BspLI GGNNCC 8 cut(s) 109, 115, 127, 266, 451, 976, 977, 1339
BspMAI CTGCAG 1 cut(s) 804
BspPI GGATC 8 cut(s) 19, 49, 120, 133, 256, 315, 740, 943
BspQI GCTCTTC 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 2 cut(s) 61, 462
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 2 cut(s) 61, 462
BssECI CCNNGG 3 cut(s) 1024, 1050, 1150
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 1150
Bst4CI ACNGT 9 cut(s) 287, 531, 556, 797, 1070, 1239, 1284, 1342, 1391
Bst6I CTCTTC 3 cut(s) 149, 757, 1425
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 6 cut(s) 208, 276, 769, 1042, 1348, 1352
BstDEI CTNAG 5 cut(s) 674, 788, 984, 1425, 1437
BstDSI CCRYGG 1 cut(s) 1024
BstF5I GGATG 3 cut(s) 476, 508, 1328
BstHHI GCGC 1 cut(s) 552
BstMAI GTCTC 3 cut(s) 143, 672, 1251
BstMWI GCNNNNNNNGC 2 cut(s) 15, 386
BstNSI RCATGY 3 cut(s) 685, 1019, 1354
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 1049, 1050
BstSFI CTRYAG 1 cut(s) 800
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 3 cut(s) 60, 414, 606
BstX2I RGATCY 6 cut(s) 11, 54, 125, 248, 307, 1263
BstYI RGATCY 6 cut(s) 11, 54, 125, 248, 307, 1263
Bsu36I CCTNAGG 1 cut(s) 1425
BsuRI GGCC 1 cut(s) 692
BtgI CCRYGG 1 cut(s) 1024
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 3 cut(s) 476, 508, 1328
BtsIMutI CAGTG 3 cut(s) 381, 435, 849
Cac8I GCNNGC 6 cut(s) 208, 276, 769, 1042, 1348, 1352
CaiI CAGNNNCTG 2 cut(s) 795, 851
CciI TCATGA 3 cut(s) 31, 486, 1381
CfoI GCGC 1 cut(s) 552
Cfr10I RCCGGY 2 cut(s) 61, 462
Cfr13I GGNCC 3 cut(s) 265, 449, 975
Cfr9I CCCGGG 1 cut(s) 1050
CseI GACGC 2 cut(s) 52, 54
Csp6I GTAC 1 cut(s) 283
CviAII CATG 7 cut(s) 32, 487, 682, 1016, 1273, 1351, 1382
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 5 cut(s) 674, 788, 984, 1425, 1437
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 3 cut(s) 149, 757, 1425
EarI CTCTTC 3 cut(s) 149, 757, 1425
EciI GGCGGA 1 cut(s) 1010
Eco130I CCWWGG 1 cut(s) 1150
Eco24I GRGCYC 1 cut(s) 1381
Eco47I GGWCC 3 cut(s) 265, 449, 975
Eco57I CTGAAG 1 cut(s) 867
Eco81I CCTNAGG 1 cut(s) 1425
Eco88I CYCGRG 2 cut(s) 167, 1050
EcoO109I RGGNCCY 1 cut(s) 975
EcoT14I CCWWGG 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 1381
ErhI CCWWGG 1 cut(s) 1150
Esp3I CGTCTC 2 cut(s) 143, 1251
FaeI CATG 7 cut(s) 35, 490, 685, 1019, 1276, 1354, 1385
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 719, 751
FaqI GGGAC 3 cut(s) 435, 988, 1283
FatI CATG 7 cut(s) 31, 486, 681, 1015, 1272, 1350, 1381
FauNDI CATATG 1 cut(s) 896
Fnu4HI GCNGC 2 cut(s) 336, 712
FokI GGATG 3 cut(s) 463, 515, 1335
FriOI GRGCYC 1 cut(s) 1381
Fsp4HI GCNGC 2 cut(s) 336, 712
FspAI RTGCGCAY 1 cut(s) 551
FspBI CTAG 2 cut(s) 15, 573
FspI TGCGCA 1 cut(s) 551
GlaI GCGC 1 cut(s) 551
GluI GCNGC 2 cut(s) 336, 712
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 1 cut(s) 692
HapII CCGG 6 cut(s) 62, 111, 117, 463, 689, 1051
HgaI GACGC 2 cut(s) 52, 54
HhaI GCGC 1 cut(s) 552
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 7 cut(s) 35, 490, 685, 1019, 1276, 1354, 1385
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 5 cut(s) 28, 159, 602, 635, 1433
HpaII CCGG 6 cut(s) 62, 111, 117, 463, 689, 1051
HphI GGTGA 4 cut(s) 35, 1196, 1288, 1322
Hpy166II GTNNAC 2 cut(s) 1204, 1328
Hpy188I TCNGA 6 cut(s) 130, 307, 607, 625, 1196, 1288
Hpy8I GTNNAC 2 cut(s) 1204, 1328
Hpy99I CGWCG 2 cut(s) 46, 99
HpyAV CCTTC 5 cut(s) 239, 493, 626, 1214, 1409
HpyCH4III ACNGT 9 cut(s) 287, 531, 556, 797, 1070, 1239, 1284, 1342, 1391
HpyCH4IV ACGT 1 cut(s) 1124
HpyCH4V TGCA 7 cut(s) 278, 435, 771, 802, 820, 945, 1242
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 386
HpyF3I CTNAG 5 cut(s) 674, 788, 984, 1425, 1437
HpySE526I ACGT 1 cut(s) 1124
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 7 cut(s) 35, 490, 685, 1019, 1276, 1354, 1385
HspAI GCGC 1 cut(s) 550
KflI GGGWCCC 1 cut(s) 975
LguI GCTCTTC 1 cut(s) 757
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 4 cut(s) 63, 367, 537, 829
MaeI CTAG 2 cut(s) 15, 573
MaeII ACGT 1 cut(s) 1124
MaeIII GTNAC 3 cut(s) 416, 791, 841
MflI RGATCY 6 cut(s) 11, 54, 125, 248, 307, 1263
MhlI GDGCHC 1 cut(s) 1381
MluCI AATT 6 cut(s) 361, 481, 491, 815, 865, 1045
MlyI GAGTC 4 cut(s) 37, 596, 644, 1442
MroXI GAANNNNTTC 1 cut(s) 1251
MseI TTAA 6 cut(s) 177, 317, 696, 774, 957, 1295
MslI CAYNNNNRTG 1 cut(s) 624
MspI CCGG 6 cut(s) 62, 111, 117, 463, 689, 1051
MspR9I CCNGG 2 cut(s) 1051, 1052
MwoI GCNNNNNNNGC 2 cut(s) 15, 386
NciI CCSGG 2 cut(s) 1051, 1052
NdeI CATATG 1 cut(s) 896
NlaIII CATG 7 cut(s) 35, 490, 685, 1019, 1276, 1354, 1385
NlaIV GGNNCC 8 cut(s) 109, 115, 127, 266, 451, 976, 977, 1339
NmuCI GTSAC 2 cut(s) 416, 841
NsbI TGCGCA 1 cut(s) 551
NspI RCATGY 3 cut(s) 685, 1019, 1354
PaeI GCATGC 1 cut(s) 1354
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 3 cut(s) 31, 486, 1381
PciSI GCTCTTC 1 cut(s) 757
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 337, 713
PleI GAGTC 4 cut(s) 36, 596, 643, 1441
PpsI GAGTC 4 cut(s) 36, 596, 643, 1441
PpuMI RGGWCCY 1 cut(s) 975
PshAI GACNNNNGTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 975
PspFI CCCAGC 1 cut(s) 509
PspN4I GGNNCC 8 cut(s) 109, 115, 127, 266, 451, 976, 977, 1339
PspPI GGNCC 3 cut(s) 265, 449, 975
PspPPI RGGWCCY 1 cut(s) 975
PstI CTGCAG 1 cut(s) 804
PstNI CAGNNNCTG 2 cut(s) 795, 851
PsuI RGATCY 6 cut(s) 11, 54, 125, 248, 307, 1263
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 624
SapI GCTCTTC 1 cut(s) 757
SaqAI TTAA 6 cut(s) 177, 317, 696, 774, 957, 1295
SatI GCNGC 2 cut(s) 336, 712
Sau96I GGNCC 3 cut(s) 265, 449, 975
SchI GAGTC 4 cut(s) 37, 596, 644, 1442
ScrFI CCNGG 2 cut(s) 1051, 1052
SduI GDGCHC 1 cut(s) 1381
SfaNI GCATC 4 cut(s) 63, 367, 537, 829
SfcI CTRYAG 1 cut(s) 800
Sfr274I CTCGAG 1 cut(s) 167
SgrAI CRCCGGYG 1 cut(s) 61
SinI GGWCC 3 cut(s) 265, 449, 975
SlaI CTCGAG 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 146, 167
SmoI CTYRAG 2 cut(s) 146, 167
SphI GCATGC 1 cut(s) 1354
Sse9I AATT 6 cut(s) 361, 481, 491, 815, 865, 1045
SsiI CCGC 3 cut(s) 9, 712, 1021
SspMI CTAG 2 cut(s) 15, 573
StyD4I CCNGG 2 cut(s) 1049, 1050
StyI CCWWGG 1 cut(s) 1150
TaaI ACNGT 9 cut(s) 287, 531, 556, 797, 1070, 1239, 1284, 1342, 1391
TaiI ACGT 1 cut(s) 1127
TaqI TCGA 6 cut(s) 41, 71, 168, 1008, 1077, 1255
TaqII GACCGA 1 cut(s) 437
TasI AATT 6 cut(s) 361, 481, 491, 815, 865, 1045
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 6 cut(s) 177, 317, 696, 774, 957, 1295
Tru9I TTAA 6 cut(s) 177, 317, 696, 774, 957, 1295
TscAI CASTG 3 cut(s) 388, 442, 856
TseFI GTSAC 2 cut(s) 416, 841
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 416, 841
TspDTI ATGAA 8 cut(s) 413, 420, 475, 503, 608, 642, 982, 1248
TspGWI ACGGA 1 cut(s) 1124
TspMI CCCGGG 1 cut(s) 1050
TspRI CASTG 3 cut(s) 388, 442, 856
VpaK11BI GGWCC 3 cut(s) 265, 449, 975
XapI RAATTY 1 cut(s) 491
XceI RCATGY 3 cut(s) 685, 1019, 1354
XhoI CTCGAG 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 1050
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 2 cut(s) 15, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.