Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011013

Physical Location & Seq

Genomic Coordinates Forward (+)

10661709 .. 10664930

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGATGCAACTGGTGCAGAAAAGGAACTATGAGGACTTTTGCCACATTGCCTCTGTATGTACGGAGCAGATAGGGACTAAATGCCGGCGCTTTTTCAGCCCTTCAAATTTCATGAAATTTGAGAAAGATGAACAGGGAAGAATTGCCATTCTGCCCTTTTACCTTTATGTGATGAGAACGGTGTCACTTACTCAAGCTCGAATTGACATGAGCGAACTTGATGAGGATTCTGATGGTTTTCTTCAGCCTCATGAAATGGGAGCCTATATACGAGGCCTTATACCTAATCTAGCGCAATTACGGGACATGCCTTCAGGCTTTAGTGCAATGTATTGCCGCATAGCTGCACAAAAATTCTTCTTCTTTTGTGACCCTCATAGACGAGGAAAAGCCTGCATAAAGAAGGTGTTGTTGAGTAATTGTCTCCAGGAACTAATGGAACTGCACCAGGAAAGTGAGGAAGAAGTCACTGACAATGAGCAAGCTGAAAACTGGTTCTCTTTGACATCCGCCCAGCGCATATGTGACATGTTCATTGCTCTAGATAAAGATTCGAGTCAATCATTGAGCAAGCAGGAACTTCGAGAATATGCGGATGGGACATTGACTGAAATTATCATTGAAAGAGTGTTTGACGAGCACGTTCGGCGTGGAAAAAGTGGAGGAAGTTCTAGGGAAATGGACTTTGATAGTTTTCTAGACTTTGTCCTGGCCTTAGAAAACAAAGACACCCCAGAGGGCTTAACATATTTGTTTCGATGTCTTGATCTTCAAGGAAGGGGTTACCTTACAACAGCTGATATACACTCTCTTTTCAGGGATGTACATCAGAAATGGATCGAGGGTGGAAACTACGAATTGTGTATTGAGGATGTAAGGGATGAAATCTGGGACATGGTTAAACCAGCCGATCCGCTGCAGATTACATTGGCTGATTTACTAGCTTGCAAACAAGGCGGCACTGTTGCCAGCATGCTCATAGATGTGCGTGGTTTCTGGGCACATGACAATAGAGAAAATCTTCTCCAAGAAGAAGAGGAACCAGAAGAAGAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016043 GO:0016049 GO:0022402 GO:0022607 GO:0030865 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

353

Amino Acids

40.71

Weight (kDa)

4.71

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18580
fragaria_vesca	FvH4_4g17580 FvH4_4g17580
malus_domestica	MD13G1171500.v1.1 MD16G1173200.v1.1
prunus_persica	Prupe.1G140000_v2.0.a1 Prupe.1G140000_v2.0.a1
pyrus_communis	pycom13g14720 pycom16g14520
rosa_chinensis	RchiOBHm_Chr4g0421481
rosa_laevigata	RLG00000007676
rosa_multiflora	Rmu_sc0001962.1_g000024
rosa_roxburghii	Rroxscaffold_5G00363740
rosa_rugosa	Rorug04G0171800 Rorug04G0171900
rosa_samantha	Rh4AG232400 Rh4BG235200 Rh4CG246700 Rh4DG230900
rosa_wichuraiana	Rw4G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	337, 510, 593, 914, 957
AclWI	GGATC	2 cut(s)	845, 905
AcsI	RAATTY	3 cut(s)	106, 116, 353
AcuI	CTGAAG	2 cut(s)	227, 297
AfaI	GTAC	2 cut(s)	61, 825
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	3 cut(s)	105, 623, 773
AjnI	CCWGG	3 cut(s)	426, 447, 708
AluBI	AGCT	5 cut(s)	197, 344, 485, 797, 944
AluI	AGCT	5 cut(s)	197, 344, 485, 797, 944
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	845, 905
AoxI	GGCC	2 cut(s)	274, 711
ApeKI	GCWGC	2 cut(s)	344, 916
ApoI	RAATTY	3 cut(s)	106, 116, 353
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspLEI	GCGC	3 cut(s)	90, 295, 519
BaeGI	GKGCMC	1 cut(s)	1003
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	331, 903
BccI	CCATC	2 cut(s)	227, 590
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	3 cut(s)	428, 449, 710
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	5 cut(s)	290, 542, 672, 698, 941
BfmI	CTRYAG	1 cut(s)	917
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	4 cut(s)	337, 345, 917, 958
BlsI	GCNGC	4 cut(s)	338, 346, 918, 959
Bme1390I	CCNGG	3 cut(s)	428, 449, 710
BmiI	GGNNCC	2 cut(s)	262, 1041
BmrFI	CCNGG	3 cut(s)	428, 449, 710
BpmI	CTGGAG	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	825
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	15, 497
Bse3DI	GCAATG	3 cut(s)	45, 333, 534
Bse8I	GATNNNNATC	1 cut(s)	825
BseBI	CCWGG	3 cut(s)	428, 449, 710
BseGI	GGATG	5 cut(s)	506, 601, 826, 877, 886
BseJI	GATNNNNATC	1 cut(s)	825
BseMI	GCAATG	3 cut(s)	45, 333, 534
BseNI	ACTGG	2 cut(s)	15, 497
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	2 cut(s)	331, 903
BseYI	CCCAGC	1 cut(s)	513
BsgI	GTGCAG	3 cut(s)	35, 330, 428
BshFI	GGCC	2 cut(s)	276, 713
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	4 cut(s)	88, 317, 613, 905
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	4 cut(s)	88, 317, 613, 905
BsnI	GGCC	2 cut(s)	276, 713
Bsp1286I	GDGCHC	2 cut(s)	642, 1003
Bsp1407I	TGTACA	1 cut(s)	823
Bsp143I	GATC	3 cut(s)	766, 837, 910
BspACI	CCGC	5 cut(s)	337, 510, 593, 914, 957
BspANI	GGCC	2 cut(s)	276, 713
BspHI	TCATGA	2 cut(s)	111, 250
BspLI	GGNNCC	2 cut(s)	262, 1041
BspMAI	CTGCAG	1 cut(s)	921
BspPI	GGATC	2 cut(s)	845, 905
BsrDI	GCAATG	3 cut(s)	45, 333, 534
BsrFI	RCCGGY	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	823
BsrI	ACTGG	2 cut(s)	15, 497
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	3 cut(s)	766, 837, 910
Bst2UI	CCWGG	3 cut(s)	428, 449, 710
Bst4CI	ACNGT	2 cut(s)	181, 964
Bst6I	CTCTTC	1 cut(s)	1029
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	823
BstC8I	GCNNGC	7 cut(s)	86, 394, 483, 572, 946, 970, 974
BstDEI	CTNAG	1 cut(s)	715
BstEII	GGTNACC	1 cut(s)	782
BstF5I	GGATG	5 cut(s)	506, 601, 826, 877, 886
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	3 cut(s)	90, 295, 519
BstKTI	GATC	3 cut(s)	769, 840, 913
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	3 cut(s)	766, 837, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 96, 646, 954
BstNI	CCWGG	3 cut(s)	428, 449, 710
BstNSI	RCATGY	3 cut(s)	310, 532, 976
BstPI	GGTNACC	1 cut(s)	782
BstSCI	CCNGG	3 cut(s)	426, 447, 708
BstSFI	CTRYAG	1 cut(s)	917
BstSLI	GKGCMC	1 cut(s)	1003
BstV1I	GCAGC	2 cut(s)	331, 903
BsuRI	GGCC	2 cut(s)	276, 713
BtsCI	GGATG	5 cut(s)	506, 601, 826, 877, 886
BtsIMutI	CAGTG	2 cut(s)	468, 960
Cac8I	GCNNGC	7 cut(s)	86, 394, 483, 572, 946, 970, 974
CciI	TCATGA	2 cut(s)	111, 250
CfoI	GCGC	3 cut(s)	90, 295, 519
Cfr10I	RCCGGY	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	60, 824
CviAII	CATG	8 cut(s)	112, 208, 251, 307, 529, 895, 973, 1004
CviQI	GTAC	2 cut(s)	60, 824
DdeI	CTNAG	1 cut(s)	715
DpnI	GATC	3 cut(s)	768, 839, 912
DpnII	GATC	3 cut(s)	766, 837, 910
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
EciI	GGCGGA	1 cut(s)	499
Eco147I	AGGCCT	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	227, 297
Eco91I	GGTNACC	1 cut(s)	782
EcoO65I	GGTNACC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	426, 447, 708
FaeI	CATG	8 cut(s)	115, 211, 254, 310, 532, 898, 976, 1007
FaqI	GGGAC	4 cut(s)	88, 317, 613, 905
FatI	CATG	8 cut(s)	111, 207, 250, 306, 528, 894, 972, 1003
FauNDI	CATATG	1 cut(s)	521
Fnu4HI	GCNGC	4 cut(s)	337, 345, 917, 958
FokI	GGATG	5 cut(s)	493, 608, 833, 884, 893
Fsp4HI	GCNGC	4 cut(s)	337, 345, 917, 958
FspBI	CTAG	5 cut(s)	290, 542, 672, 698, 941
GlaI	GCGC	3 cut(s)	89, 294, 518
GluI	GCNGC	4 cut(s)	337, 345, 917, 958
GsaI	CCCAGC	1 cut(s)	517
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	276, 713
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	3 cut(s)	90, 295, 519
Hin1II	CATG	8 cut(s)	115, 211, 254, 310, 532, 898, 976, 1007
Hin6I	GCGC	3 cut(s)	88, 293, 517
HinP1I	GCGC	3 cut(s)	88, 293, 517
HinfI	GANTC	4 cut(s)	227, 551, 556, 1052
HpaII	CCGG	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	232, 831
Hpy188III	TCNNGA	6 cut(s)	112, 251, 542, 584, 698, 764
HpyAV	CCTTC	4 cut(s)	111, 321, 397, 771
HpyCH4III	ACNGT	2 cut(s)	181, 964
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	8 cut(s)	7, 16, 326, 347, 396, 445, 919, 948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 96, 646, 954
HpyF3I	CTNAG	1 cut(s)	715
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	8 cut(s)	115, 211, 254, 310, 532, 898, 976, 1007
HspAI	GCGC	3 cut(s)	88, 293, 517
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	766, 837, 910
LmnI	GCTCC	2 cut(s)	64, 260
Lsp1109I	GCAGC	2 cut(s)	331, 903
MaeI	CTAG	5 cut(s)	290, 542, 672, 698, 941
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	5 cut(s)	183, 368, 466, 524, 782
MalI	GATC	3 cut(s)	768, 839, 912
MboI	GATC	3 cut(s)	766, 837, 910
MhlI	GDGCHC	2 cut(s)	642, 1003
MluCI	AATT	9 cut(s)	106, 116, 141, 201, 296, 353, 418, 612, 857
MlyI	GAGTC	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	2 cut(s)	743, 900
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	797, 916
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	3 cut(s)	428, 449, 710
MvaI	CCWGG	3 cut(s)	428, 449, 710
MwoI	GCNNNNNNNGC	4 cut(s)	13, 96, 646, 954
NaeI	GCCGGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	3 cut(s)	766, 837, 910
NgoMIV	GCCGGC	1 cut(s)	84
NlaIII	CATG	8 cut(s)	115, 211, 254, 310, 532, 898, 976, 1007
NlaIV	GGNNCC	2 cut(s)	262, 1041
NmuCI	GTSAC	4 cut(s)	183, 368, 466, 524
NspI	RCATGY	3 cut(s)	310, 532, 976
PaeI	GCATGC	1 cut(s)	976
PagI	TCATGA	2 cut(s)	111, 250
PceI	AGGCCT	1 cut(s)	276
PciI	ACATGT	1 cut(s)	528
PdiI	GCCGGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	3 cut(s)	227, 551, 1052
PflFI	GACNNNGTC	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	4 cut(s)	338, 346, 918, 959
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
PscI	ACATGT	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	426, 447, 708
PspEI	GGTNACC	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	3 cut(s)	426, 447, 708
PspN4I	GGNNCC	2 cut(s)	262, 1041
PstI	CTGCAG	1 cut(s)	921
PsyI	GACNNNGTC	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	61, 825
RsaNI	GTAC	2 cut(s)	60, 824
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	2 cut(s)	743, 900
SatI	GCNGC	4 cut(s)	337, 345, 917, 958
Sau3AI	GATC	3 cut(s)	766, 837, 910
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	3 cut(s)	428, 449, 710
SduI	GDGCHC	2 cut(s)	642, 1003
SfcI	CTRYAG	1 cut(s)	917
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	976
Sse9I	AATT	9 cut(s)	106, 116, 141, 201, 296, 353, 418, 612, 857
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	5 cut(s)	337, 510, 593, 914, 957
SspMI	CTAG	5 cut(s)	290, 542, 672, 698, 941
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	426, 447, 708
TaaI	ACNGT	2 cut(s)	181, 964
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	5 cut(s)	199, 554, 583, 757, 840
TasI	AATT	9 cut(s)	106, 116, 141, 201, 296, 353, 418, 612, 857
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	2 cut(s)	339, 960
TfiI	GAWTC	3 cut(s)	227, 551, 1052
Tru1I	TTAA	2 cut(s)	743, 900
Tru9I	TTAA	2 cut(s)	743, 900
TscAI	CASTG	2 cut(s)	475, 967
TseFI	GTSAC	4 cut(s)	183, 368, 466, 524
TseI	GCWGC	2 cut(s)	344, 916
Tsp45I	GTSAC	4 cut(s)	183, 368, 466, 524
TspDTI	ATGAA	6 cut(s)	100, 128, 144, 267, 523, 897
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	475, 967
Tth111I	GACNNNGTC	1 cut(s)	704
XapI	RAATTY	3 cut(s)	106, 116, 353
XbaI	TCTAGA	2 cut(s)	541, 697
XceI	RCATGY	3 cut(s)	310, 532, 976
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	5 cut(s)	290, 542, 672, 698, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.