Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011013

Physical Location & Seq

Genomic Coordinates Reverse (-)

40133792 .. 40140432

Gene Structure 6641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTACAGCGGGTCCAGTGACGGCGAAAGCCATGAGACCGCGCAGAGGAAGATCCCACCGGCTTCGTCTATGTTGTGGGTCCGCAACCTCCGCCGCTACATCGGATCCGGGGCCGGACTCGGATCCGAAGCCCTCATGGAGCTTGAAACAAAGAGAATCTTGCTTGACATTTTCAAAGAGAAGCAACAAAAAAGTGCTGAAGCTGCCACAATCCCAAGTTTCTATAAGAAGAAACCTGAAGAAGGATCTATTAGTCAAAGGGTCCAGAGGCTTGCAAAATATCGGTTTTTAAAGAAGCAATCTGATCTTTTGCTAAATGCTGATGATCTAGATTCCATGTGGGTTTGCTTAAGGGAAAATTGTGTGATTGATGATGCAACTGGTGCAGAAAAGATGAATTATGAAGACTTCTGCCACATTGCCTCTGTATGCACAGAGCAGATAGGGCCCAAATGCCGTCGCTTTTTCAGCCCTTCAAATTTCATGAAGTTTGAGAAAGATGAACAAGGAAGAATTGCCATTCTGCCCTTCTATCTCTATGTGATGAGAACGGTTTCACTGACACAAGCTAGAATTGACATGAGTGAGCTTGATGAGGATTCTGATGGTTTTCTTCAGCGTCATGAAATGGAAGCATATATACGAGGTCTCATACCTAATCTGGCGCAACTACGGGACATGCCTGCAGGATTTCTTAACATGTATTGCCGCATAGCTGCACAGAAGTTCTTCTTCTTTTGTGACCCTCATAGACGAGGAAAAGCCTGCATAAAGAAGGTGTTATTGAGTAATTGTCTCCAGGAATTAATGGAACTGCATCAGGAAAGTGAGGAAGAAGTCACTGACAATGAGCAAGCAGAAAATTGGTTCTCCATGACATCTGCCCAGCGAATATGTGATGTGTTCCTTGGCCTTGATACAGATAATAATGGATCGTTAAGCAAGCAAGAACTTCGAGAATATGCAGATGGGACGTTGACTGAAATCATCATTGAAAGAGGTATGCACAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016043 GO:0016049 GO:0022402 GO:0022607 GO:0030865 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

338

Amino Acids

38.86

Weight (kDa)

5.47

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18580
fragaria_vesca	FvH4_4g17580 FvH4_4g17580
malus_domestica	MD13G1171500.v1.1 MD16G1173200.v1.1
prunus_persica	Prupe.1G140000_v2.0.a1 Prupe.1G140000_v2.0.a1
pyrus_communis	pycom13g14720 pycom16g14520
rosa_chinensis	RchiOBHm_Chr4g0421481
rosa_laevigata	RLG00000007676
rosa_multiflora	Rmu_sc0001962.1_g000024
rosa_roxburghii	Rroxscaffold_5G00363740
rosa_rugosa	Rorug04G0171800 Rorug04G0171900
rosa_samantha	Rh4AG232400 Rh4BG235200 Rh4CG246700 Rh4DG230900
rosa_wichuraiana	Rw4G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	9, 39, 82, 91, 94, 709
AclWI	GGATC	7 cut(s)	46, 99, 112, 117, 130, 253, 940
AcsI	RAATTY	2 cut(s)	478, 1011
AcuI	CTGAAG	3 cut(s)	219, 258, 599
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	45, 242
AflII	CTTAAG	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	4 cut(s)	146, 175, 477, 995
AjnI	CCWGG	1 cut(s)	798
AluBI	AGCT	5 cut(s)	142, 203, 569, 589, 716
AluI	AGCT	5 cut(s)	142, 203, 569, 589, 716
Alw26I	GTCTC	3 cut(s)	29, 653, 800
AlwI	GGATC	7 cut(s)	46, 99, 112, 117, 130, 253, 940
AoxI	GGCC	3 cut(s)	111, 446, 910
ApaI	GGGCCC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	203, 716
ApoI	RAATTY	2 cut(s)	478, 1011
AseI	ATTAAT	1 cut(s)	806
Asp700I	GAANNNNTTC	2 cut(s)	553, 728
AspLEI	GCGC	2 cut(s)	43, 667
AspS9I	GGNCC	6 cut(s)	12, 79, 111, 262, 446, 447
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	12, 79, 262
BaeGI	GKGCMC	1 cut(s)	450
BamHI	GGATCC	2 cut(s)	104, 122
BanII	GRGCYC	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	624, 656
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	190, 703
BccI	CCATC	2 cut(s)	599, 962
BceAI	ACGGC	2 cut(s)	37, 441
BcgI	CGANNNNNNTGC	2 cut(s)	935, 969
BciT130I	CCWGG	1 cut(s)	800
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	29, 653, 800
BfaI	CTAG	2 cut(s)	329, 570
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	349
BisI	GCNGC	4 cut(s)	94, 204, 709, 717
BlsI	GCNGC	4 cut(s)	95, 205, 710, 718
Bme1390I	CCNGG	2 cut(s)	109, 800
Bme18I	GGWCC	3 cut(s)	12, 79, 262
BmgT120I	GGNCC	6 cut(s)	12, 79, 111, 262, 446, 447
BmiI	GGNNCC	7 cut(s)	13, 80, 106, 112, 124, 263, 448
BmrFI	CCNGG	2 cut(s)	109, 800
BmsI	GCATC	2 cut(s)	364, 826
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	109
BsaI	GGTCTC	2 cut(s)	29, 653
BsaJI	CCNNGG	2 cut(s)	108, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 242
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	15, 385
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	108, 907
BseLI	CCNNNNNNNGG	2 cut(s)	45, 242
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	15, 385
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	190, 703
BseYI	CCCAGC	1 cut(s)	885
BsgI	GTGCAG	2 cut(s)	405, 702
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	113, 448, 912
BsiSI	CCGG	3 cut(s)	59, 108, 114
BslFI	GGGAC	2 cut(s)	689, 985
BslI	CCNNNNNNNGG	2 cut(s)	45, 242
BsmAI	GTCTC	3 cut(s)	29, 653, 800
BsmFI	GGGAC	2 cut(s)	689, 985
BsnI	GGCC	3 cut(s)	113, 448, 912
Bso31I	GGTCTC	2 cut(s)	29, 653
Bsp120I	GGGCCC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
BspACI	CCGC	6 cut(s)	9, 39, 82, 91, 94, 709
BspANI	GGCC	3 cut(s)	113, 448, 912
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	2 cut(s)	483, 622
BspLI	GGNNCC	7 cut(s)	13, 80, 106, 112, 124, 263, 448
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	7 cut(s)	46, 99, 112, 117, 130, 253, 940
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	2 cut(s)	29, 653
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	15, 385
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	108, 907
BssMI	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
BssT1I	CCWWGG	1 cut(s)	907
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	1 cut(s)	553
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	5 cut(s)	273, 684, 766, 855, 944
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	43, 667
BstKTI	GATC	7 cut(s)	54, 107, 125, 248, 307, 328, 935
BstMAI	GTCTC	3 cut(s)	29, 653, 800
BstMBI	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 203, 383, 445, 468
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	2 cut(s)	682, 703
BstSCI	CCNGG	2 cut(s)	107, 798
BstSFI	CTRYAG	1 cut(s)	684
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	190, 703
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	4 cut(s)	51, 104, 122, 245
BstYI	RGATCY	4 cut(s)	51, 104, 122, 245
BsuRI	GGCC	3 cut(s)	113, 448, 912
BtsIMutI	CAGTG	3 cut(s)	22, 557, 840
Cac8I	GCNNGC	5 cut(s)	273, 684, 766, 855, 944
CciI	TCATGA	2 cut(s)	483, 622
CfoI	GCGC	2 cut(s)	43, 667
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	6 cut(s)	12, 79, 111, 262, 446, 447
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	9 cut(s)	32, 136, 337, 484, 580, 623, 679, 700, 874
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	7 cut(s)	53, 106, 124, 247, 306, 327, 934
DpnII	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
DraI	TTTAAA	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	907
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	2 cut(s)	29, 653
Eco47I	GGWCC	3 cut(s)	12, 79, 262
Eco57I	CTGAAG	3 cut(s)	219, 258, 599
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	907
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	907
FaeI	CATG	9 cut(s)	35, 139, 340, 487, 583, 626, 682, 703, 877
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 716, 748
FaqI	GGGAC	2 cut(s)	689, 985
FatI	CATG	9 cut(s)	31, 135, 336, 483, 579, 622, 678, 699, 873
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	4 cut(s)	94, 204, 709, 717
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	4 cut(s)	94, 204, 709, 717
FspBI	CTAG	2 cut(s)	329, 570
GlaI	GCGC	2 cut(s)	42, 666
GluI	GCNGC	4 cut(s)	94, 204, 709, 717
GsaI	CCCAGC	1 cut(s)	889
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	3 cut(s)	113, 448, 912
HapII	CCGG	3 cut(s)	59, 108, 114
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	2 cut(s)	43, 667
Hin1II	CATG	9 cut(s)	35, 139, 340, 487, 583, 626, 682, 703, 877
Hin6I	GCGC	2 cut(s)	41, 665
HinP1I	GCGC	2 cut(s)	41, 665
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HinfI	GANTC	4 cut(s)	117, 156, 332, 599
HpaII	CCGG	3 cut(s)	59, 108, 114
Hpy166II	GTNNAC	1 cut(s)	978
Hpy188I	TCNGA	5 cut(s)	104, 122, 127, 304, 604
Hpy188III	TCNNGA	6 cut(s)	265, 329, 484, 623, 821, 956
Hpy8I	GTNNAC	1 cut(s)	978
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	236, 483, 538, 769
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 203, 383, 445, 468
HpySE526I	ACGT	1 cut(s)	974
Hsp92II	CATG	9 cut(s)	35, 139, 340, 487, 583, 626, 682, 703, 877
HspAI	GCGC	2 cut(s)	41, 665
Kzo9I	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	190, 703
LweI	GCATC	2 cut(s)	364, 826
MaeI	CTAG	2 cut(s)	329, 570
MaeII	ACGT	1 cut(s)	974
MaeIII	GTNAC	3 cut(s)	17, 740, 838
MalI	GATC	7 cut(s)	53, 106, 124, 247, 306, 327, 934
MboI	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
MboII	GAAGA	9 cut(s)	61, 241, 251, 416, 522, 605, 721, 724, 845
MflI	RGATCY	4 cut(s)	51, 104, 122, 245
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	9 cut(s)	358, 397, 478, 513, 573, 790, 803, 862, 1011
MlyI	GAGTC	1 cut(s)	111
MroXI	GAANNNNTTC	2 cut(s)	553, 728
MseI	TTAA	5 cut(s)	290, 350, 696, 806, 938
MspA1I	CMGCKG	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	3 cut(s)	59, 108, 114
MspR9I	CCNGG	2 cut(s)	109, 800
MvaI	CCWGG	1 cut(s)	800
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	90, 203, 383, 445, 468
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
NlaIII	CATG	9 cut(s)	35, 139, 340, 487, 583, 626, 682, 703, 877
NlaIV	GGNNCC	7 cut(s)	13, 80, 106, 112, 124, 263, 448
NmuCI	GTSAC	3 cut(s)	17, 740, 838
NspI	RCATGY	2 cut(s)	682, 703
PagI	TCATGA	2 cut(s)	483, 622
PciI	ACATGT	1 cut(s)	699
PdmI	GAANNNNTTC	2 cut(s)	553, 728
PfeI	GAWTC	3 cut(s)	156, 332, 599
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	95, 205, 710, 718
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PscI	ACATGT	1 cut(s)	699
PshBI	ATTAAT	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	798
PspN4I	GGNNCC	7 cut(s)	13, 80, 106, 112, 124, 263, 448
PspOMI	GGGCCC	1 cut(s)	446
PspPI	GGNCC	6 cut(s)	12, 79, 111, 262, 446, 447
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	4 cut(s)	51, 104, 122, 245
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	290, 350, 696, 806, 938
SatI	GCNGC	4 cut(s)	94, 204, 709, 717
Sau3AI	GATC	7 cut(s)	51, 104, 122, 245, 304, 325, 932
Sau96I	GGNCC	6 cut(s)	12, 79, 111, 262, 446, 447
SbfI	CCTGCAGG	1 cut(s)	688
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	109, 800
SdaI	CCTGCAGG	1 cut(s)	688
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	364, 826
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	3 cut(s)	12, 79, 262
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse8387I	CCTGCAGG	1 cut(s)	688
Sse9I	AATT	9 cut(s)	358, 397, 478, 513, 573, 790, 803, 862, 1011
SsiI	CCGC	6 cut(s)	9, 39, 82, 91, 94, 709
SspMI	CTAG	2 cut(s)	329, 570
StyD4I	CCNGG	2 cut(s)	107, 798
StyI	CCWWGG	1 cut(s)	907
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	977
TaqI	TCGA	1 cut(s)	955
TasI	AATT	9 cut(s)	358, 397, 478, 513, 573, 790, 803, 862, 1011
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	96, 711
TfiI	GAWTC	3 cut(s)	156, 332, 599
Tru1I	TTAA	5 cut(s)	290, 350, 696, 806, 938
Tru9I	TTAA	5 cut(s)	290, 350, 696, 806, 938
TscAI	CASTG	3 cut(s)	22, 564, 847
TseFI	GTSAC	3 cut(s)	17, 740, 838
TseI	GCWGC	2 cut(s)	203, 716
Tsp45I	GTSAC	3 cut(s)	17, 740, 838
TspDTI	ATGAA	6 cut(s)	410, 417, 472, 500, 516, 639
TspRI	CASTG	3 cut(s)	22, 564, 847
Vha464I	CTTAAG	1 cut(s)	349
VpaK11BI	GGWCC	3 cut(s)	12, 79, 262
VspI	ATTAAT	1 cut(s)	806
XagI	CCTNNNNNAGG	1 cut(s)	240
XapI	RAATTY	2 cut(s)	478, 1011
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	2 cut(s)	682, 703
XmnI	GAANNNNTTC	2 cut(s)	553, 728
XspI	CTAG	2 cut(s)	329, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.