MD16G1173200.v1.1

serine threonine-protein phosphatase 2A regulatory subunit B'' subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
14616352 .. 14620979
4628 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1173200.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGTACAGTGGGTCCAGCGACGGCGAAGGCCATGAGGCCGCGCAGAGGAAGATCCCTCCCGCCTCCTCCATGCTCTGGGTCCGCAATCTCCGCCGCTTCATCGGATCCGGCGCCGGACTCGGATCCGAAGCCCTCATGGAGCTTGAAACAAAAAGAATCTTGCTTGATATTTTCAAAGAGAAGCAACAAAAAAGTGCTGAAGCTGGCACAATCCCAAGTTTCTACAAGAAGAAACCTGAAGAAGGATCTATTAGTCAGAGGGTCCAGAGGCTGGCAAAATATCGTTTTTTAAAGAAGCAATCAGATCTTTTGCTAAATGCGGATGATCTAGATGCTATGTGGGTTTGCTTAAGGGAAAATTGTGTGATTGATGATGCAACTGGTGCAGAAAAGATGAACTATGAAGACTTTTGCCACATTGCCTCTGTATGTACGGAGCAGATAGGGCCTAAATGTCGTCGCTTTTTCAGCCCTTCAAATTTCATGAAATTTGAGAAAGATGAACAAGGAAGAATTGCCATTCTGCCCTTTTACCTTTATGTGATGAGAACGGTTTCACTTACTCAAGCTAGAATTGACATGAGCGAACTTGACGAGGATTCTGATGGTTTTCTTCAGCCTCATGAAATGGAGGCCTATATACGAGGCCTTATACCTAATCTAGCGCAATTACGGGACATGCCTTCAGGCTTTGTTAATATGTATTGCCGCATAGCTGCACAGAAGTTCTTCTTCTTTTGTGACCCTCATAGACGAGGAAAAGCCTGCATAAAGAAGGTGTTATTGAGTAATTGTCTCCAGGAACTAATGGAACTGCACCAGGAAACTGAGGAAGAAGTCACTGACAATGAGCAAGCTGAAAACTGGTTCTCCTTGACATCCGCCCAGCGCATATGCGACATGTTCATTGCTCTTGATAAAGATTCGAGTGGATCATTGAGCAAGCAGGAACTTCGAGAATATGCAGATGGGACATTGACTGAAATTATCATTGAAAGAGTGTTTGACGAGCATGTACGGCGTGGAAAAAGTGGCGGAAGTTCTAGGGAAATGGACTTCGATAGTTTTCTGGACTTTGTCCTGGCCTTAGAAAACAAAGACACTCCAGAGGGGTTAACATATTTATTTCGATGTCTTGATCTTCAGGGAAGGGGTTACCTTACAACAGCTGATATACACTCTCTTTTCAGGGATGTACATCAGAAATGGATTGAGGGCGGAAACTATGAACTGTGTATTGAGGATGTAAGGGACGAAATATGGGACATGGTTAAACCAGCCGATCCACTGCGGATTACCTTGGCTGATTTACTAGCTTGCAAACAAGGCGGCACTGTTGCGAGCATGCTCATTGATGTGCGCGGTTTCTGGGCGCATGACAATAGAGAAAATCTGCTCCAAGAAGAAGAGGAACCAGAAGAAGAATCGTAA

Protein Analysis

477

Amino Acids

54.57

Weight (kDa)

4.9

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011013)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 2 cut(s) 75, 271
AccII CGCG 2 cut(s) 41, 1362
AclWI GGATC 8 cut(s) 46, 99, 112, 117, 130, 253, 940, 1277
AcsI RAATTY 2 cut(s) 478, 488
AcuI CTGAAG 5 cut(s) 219, 258, 599, 669, 1127
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 4 cut(s) 5, 433, 1017, 1197
AfiI CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
AflII CTTAAG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 900
AgsI TTSAA 4 cut(s) 146, 175, 477, 995
AjnI CCWGG 3 cut(s) 798, 819, 1080
AluBI AGCT 7 cut(s) 142, 203, 569, 716, 857, 1169, 1316
AluI AGCT 7 cut(s) 142, 203, 569, 716, 857, 1169, 1316
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 8 cut(s) 46, 99, 112, 117, 130, 253, 940, 1277
AlwNI CAGNNNCTG 1 cut(s) 271
AoxI GGCC 6 cut(s) 28, 36, 446, 633, 646, 1083
ApeKI GCWGC 1 cut(s) 716
ApoI RAATTY 2 cut(s) 478, 488
Asp700I GAANNNNTTC 2 cut(s) 553, 728
AspLEI GCGC 6 cut(s) 43, 113, 667, 891, 1362, 1375
AspS9I GGNCC 4 cut(s) 12, 79, 262, 446
AvaII GGWCC 3 cut(s) 12, 79, 262
BamHI GGATCC 2 cut(s) 104, 122
BanI GGYRCC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 703
BccI CCATC 2 cut(s) 599, 962
BceAI ACGGC 2 cut(s) 37, 1034
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 3 cut(s) 800, 821, 1082
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 5 cut(s) 329, 570, 662, 1044, 1313
BfoI RGCGCY 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 349
BglII AGATCT 1 cut(s) 304
BisI GCNGC 5 cut(s) 39, 94, 709, 717, 1330
BlsI GCNGC 5 cut(s) 40, 95, 710, 718, 1331
Bme1390I CCNGG 3 cut(s) 800, 821, 1082
Bme18I GGWCC 3 cut(s) 12, 79, 262
BmgT120I GGNCC 4 cut(s) 12, 79, 262, 446
BmiI GGNNCC 7 cut(s) 13, 80, 106, 112, 124, 263, 1413
BmrFI CCNGG 3 cut(s) 800, 821, 1082
BmsI GCATC 2 cut(s) 322, 364
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 2 cut(s) 782, 1089
BpuEI CTTGAG 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 1197
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 1299
BsaXI ACNNNNNCTCC 2 cut(s) 854, 884
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
Bse1I ACTGG 2 cut(s) 385, 869
Bse3DI GCAATG 2 cut(s) 417, 906
Bse8I GATNNNNATC 1 cut(s) 1197
BseBI CCWGG 3 cut(s) 800, 821, 1082
BseDI CCNNGG 1 cut(s) 1299
BseGI GGATG 4 cut(s) 328, 878, 1198, 1249
BseJI GATNNNNATC 1 cut(s) 1197
BseLI CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
BseMI GCAATG 2 cut(s) 417, 906
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 2 cut(s) 385, 869
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 703
BseYI CCCAGC 1 cut(s) 885
BsgI GTGCAG 3 cut(s) 405, 702, 800
Bsh1236I CGCG 2 cut(s) 41, 1362
BshFI GGCC 6 cut(s) 30, 38, 448, 635, 648, 1085
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 108, 114
BslFI GGGAC 4 cut(s) 689, 985, 1265, 1277
BslI CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 4 cut(s) 689, 985, 1265, 1277
BsnI GGCC 6 cut(s) 30, 38, 448, 635, 648, 1085
Bsp1407I TGTACA 2 cut(s) 3, 1195
Bsp143I GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
BspANI GGCC 6 cut(s) 30, 38, 448, 635, 648, 1085
BspCNI CTCAG 1 cut(s) 820
BspFNI CGCG 2 cut(s) 41, 1362
BspHI TCATGA 2 cut(s) 483, 622
BspLI GGNNCC 7 cut(s) 13, 80, 106, 112, 124, 263, 1413
BspPI GGATC 8 cut(s) 46, 99, 112, 117, 130, 253, 940, 1277
BspT107I GGYRCC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 417, 906
BsrGI TGTACA 2 cut(s) 3, 1195
BsrI ACTGG 2 cut(s) 385, 869
BssECI CCNNGG 1 cut(s) 1299
BssMI GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 1299
Bst2UI CCWGG 3 cut(s) 800, 821, 1082
Bst4CI ACNGT 4 cut(s) 8, 553, 1233, 1336
Bst6I CTCTTC 1 cut(s) 1401
BstACI GRCGYC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 349
BstAPI GCANNNNNTGC 1 cut(s) 383
BstAUI TGTACA 2 cut(s) 3, 1195
BstC8I GCNNGC 8 cut(s) 205, 273, 766, 855, 944, 1318, 1342, 1346
BstDEI CTNAG 2 cut(s) 828, 1087
BstEII GGTNACC 1 cut(s) 1154
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 4 cut(s) 328, 878, 1198, 1249
BstFNI CGCG 2 cut(s) 41, 1362
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 6 cut(s) 43, 113, 667, 891, 1362, 1375
BstKTI GATC 9 cut(s) 54, 107, 125, 248, 307, 328, 935, 1141, 1285
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
BstMWI GCNNNNNNNGC 6 cut(s) 90, 383, 445, 468, 1018, 1326
BstNI CCWGG 3 cut(s) 800, 821, 1082
BstNSI RCATGY 4 cut(s) 682, 904, 1016, 1348
BstPI GGTNACC 1 cut(s) 1154
BstSCI CCNGG 3 cut(s) 798, 819, 1080
BstUI CGCG 2 cut(s) 41, 1362
BstV1I GCAGC 1 cut(s) 703
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 5 cut(s) 51, 104, 122, 245, 304
BstYI RGATCY 5 cut(s) 51, 104, 122, 245, 304
BsuRI GGCC 6 cut(s) 30, 38, 448, 635, 648, 1085
BtsCI GGATG 4 cut(s) 328, 878, 1198, 1249
BtsI GCAGTG 1 cut(s) 1286
BtsIMutI CAGTG 4 cut(s) 13, 840, 1286, 1332
Cac8I GCNNGC 8 cut(s) 205, 273, 766, 855, 944, 1318, 1342, 1346
CaiI CAGNNNCTG 1 cut(s) 271
CciI TCATGA 2 cut(s) 483, 622
CfoI GCGC 6 cut(s) 43, 113, 667, 891, 1362, 1375
Cfr13I GGNCC 4 cut(s) 12, 79, 262, 446
Csp6I GTAC 4 cut(s) 4, 432, 1016, 1196
CviQI GTAC 4 cut(s) 4, 432, 1016, 1196
DdeI CTNAG 2 cut(s) 828, 1087
DinI GGCGCC 1 cut(s) 112
DpnI GATC 9 cut(s) 53, 106, 124, 247, 306, 327, 934, 1140, 1284
DpnII GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
DraI TTTAAA 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 1401
EarI CTCTTC 1 cut(s) 1401
EciI GGCGGA 4 cut(s) 80, 871, 1050, 1233
Eco130I CCWWGG 1 cut(s) 1299
Eco147I AGGCCT 2 cut(s) 635, 648
Eco47I GGWCC 3 cut(s) 12, 79, 262
Eco57I CTGAAG 5 cut(s) 219, 258, 599, 669, 1127
Eco91I GGTNACC 1 cut(s) 1154
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 1154
EcoRII CCWGG 3 cut(s) 798, 819, 1080
EcoT14I CCWWGG 1 cut(s) 1299
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 1299
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 4 cut(s) 689, 985, 1265, 1277
FauI CCCGC 1 cut(s) 67
FauNDI CATATG 1 cut(s) 893
Fnu4HI GCNGC 5 cut(s) 39, 94, 709, 717, 1330
FokI GGATG 4 cut(s) 335, 865, 1205, 1256
Fsp4HI GCNGC 5 cut(s) 39, 94, 709, 717, 1330
FspBI CTAG 5 cut(s) 329, 570, 662, 1044, 1313
GlaI GCGC 6 cut(s) 42, 112, 666, 890, 1361, 1374
GluI GCNGC 5 cut(s) 39, 94, 709, 717, 1330
GsaI CCCAGC 1 cut(s) 889
GsuI CTGGAG 2 cut(s) 782, 1089
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 6 cut(s) 30, 38, 448, 635, 648, 1085
HapII CCGG 2 cut(s) 108, 114
HhaI GCGC 6 cut(s) 43, 113, 667, 891, 1362, 1375
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 6 cut(s) 41, 111, 665, 889, 1360, 1373
HinP1I GCGC 6 cut(s) 41, 111, 665, 889, 1360, 1373
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HinfI GANTC 5 cut(s) 117, 156, 599, 923, 1424
HpaI GTTAAC 1 cut(s) 1116
HpaII CCGG 2 cut(s) 108, 114
Hpy166II GTNNAC 1 cut(s) 1116
Hpy188I TCNGA 7 cut(s) 104, 122, 127, 258, 304, 604, 1203
Hpy188III TCNNGA 9 cut(s) 265, 329, 484, 623, 914, 956, 1070, 1106, 1136
Hpy8I GTNNAC 1 cut(s) 1116
Hpy99I CGWCG 2 cut(s) 23, 462
HpyAV CCTTC 6 cut(s) 20, 236, 483, 693, 769, 1143
HpyCH4III ACNGT 4 cut(s) 8, 553, 1233, 1336
HpyCH4V TGCA 7 cut(s) 377, 386, 719, 768, 817, 965, 1320
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 383, 445, 468, 1018, 1326
HpyF3I CTNAG 2 cut(s) 828, 1087
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 6 cut(s) 41, 111, 665, 889, 1360, 1373
KasI GGCGCC 1 cut(s) 110
KspAI GTTAAC 1 cut(s) 1116
Kzo9I GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
LmnI GCTCC 3 cut(s) 139, 436, 1401
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 2 cut(s) 322, 364
MaeI CTAG 5 cut(s) 329, 570, 662, 1044, 1313
MaeIII GTNAC 3 cut(s) 740, 838, 1154
MalI GATC 9 cut(s) 53, 106, 124, 247, 306, 327, 934, 1140, 1284
MboI GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
MflI RGATCY 5 cut(s) 51, 104, 122, 245, 304
MluCI AATT 8 cut(s) 358, 478, 488, 513, 573, 668, 790, 984
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 111
MroXI GAANNNNTTC 2 cut(s) 553, 728
MseI TTAA 5 cut(s) 290, 350, 696, 1115, 1272
MslI CAYNNNNRTG 1 cut(s) 1355
MspA1I CMGCKG 1 cut(s) 1169
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 2 cut(s) 108, 114
MspR9I CCNGG 3 cut(s) 800, 821, 1082
MvaI CCWGG 3 cut(s) 800, 821, 1082
MvnI CGCG 2 cut(s) 41, 1362
MwoI GCNNNNNNNGC 6 cut(s) 90, 383, 445, 468, 1018, 1326
NarI GGCGCC 1 cut(s) 111
NdeI CATATG 1 cut(s) 893
NdeII GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
NlaIV GGNNCC 7 cut(s) 13, 80, 106, 112, 124, 263, 1413
NmuCI GTSAC 2 cut(s) 740, 838
NspI RCATGY 4 cut(s) 682, 904, 1016, 1348
PaeI GCATGC 1 cut(s) 1348
PagI TCATGA 2 cut(s) 483, 622
PceI AGGCCT 2 cut(s) 635, 648
PciI ACATGT 1 cut(s) 900
PdmI GAANNNNTTC 2 cut(s) 553, 728
PfeI GAWTC 4 cut(s) 156, 599, 923, 1424
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 2 cut(s) 75, 271
PfoI TCCNGGA 1 cut(s) 798
PkrI GCNGC 5 cut(s) 40, 95, 710, 718, 1331
PleI GAGTC 1 cut(s) 111
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 111
PscI ACATGT 1 cut(s) 900
Psp6I CCWGG 3 cut(s) 798, 819, 1080
PspEI GGTNACC 1 cut(s) 1154
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 3 cut(s) 798, 819, 1080
PspN4I GGNNCC 7 cut(s) 13, 80, 106, 112, 124, 263, 1413
PspPI GGNCC 4 cut(s) 12, 79, 262, 446
PstNI CAGNNNCTG 1 cut(s) 271
PsuI RGATCY 5 cut(s) 51, 104, 122, 245, 304
PsyI GACNNNGTC 1 cut(s) 1076
PvuII CAGCTG 1 cut(s) 1169
RsaI GTAC 4 cut(s) 5, 433, 1017, 1197
RsaNI GTAC 4 cut(s) 4, 432, 1016, 1196
RseI CAYNNNNRTG 1 cut(s) 1355
SaqAI TTAA 5 cut(s) 290, 350, 696, 1115, 1272
SatI GCNGC 5 cut(s) 39, 94, 709, 717, 1330
Sau3AI GATC 9 cut(s) 51, 104, 122, 245, 304, 325, 932, 1138, 1282
Sau96I GGNCC 4 cut(s) 12, 79, 262, 446
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 800, 821, 1082
SfaNI GCATC 2 cut(s) 322, 364
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 3 cut(s) 12, 79, 262
SmiMI CAYNNNNRTG 1 cut(s) 1355
SmlI CTYRAG 2 cut(s) 349, 564
SmoI CTYRAG 2 cut(s) 349, 564
SphI GCATGC 1 cut(s) 1348
Sse9I AATT 8 cut(s) 358, 478, 488, 513, 573, 668, 790, 984
SseBI AGGCCT 2 cut(s) 635, 648
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 5 cut(s) 329, 570, 662, 1044, 1313
StuI AGGCCT 2 cut(s) 635, 648
StyD4I CCNGG 3 cut(s) 798, 819, 1080
StyI CCWWGG 1 cut(s) 1299
TaaI ACNGT 4 cut(s) 8, 553, 1233, 1336
TaqI TCGA 4 cut(s) 926, 955, 1059, 1129
TasI AATT 8 cut(s) 358, 478, 488, 513, 573, 668, 790, 984
TatI WGTACW 2 cut(s) 3, 1195
TauI GCSGC 4 cut(s) 41, 96, 711, 1332
TfiI GAWTC 4 cut(s) 156, 599, 923, 1424
Tru1I TTAA 5 cut(s) 290, 350, 696, 1115, 1272
Tru9I TTAA 5 cut(s) 290, 350, 696, 1115, 1272
TscAI CASTG 4 cut(s) 13, 847, 1293, 1339
TseFI GTSAC 2 cut(s) 740, 838
TseI GCWGC 1 cut(s) 716
Tsp45I GTSAC 2 cut(s) 740, 838
TspDTI ATGAA 9 cut(s) 88, 410, 417, 472, 500, 516, 639, 895, 1242
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 4 cut(s) 13, 847, 1293, 1339
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 2 cut(s) 75, 271
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 12, 79, 262
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 2 cut(s) 478, 488
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 4 cut(s) 682, 904, 1016, 1348
XmnI GAANNNNTTC 2 cut(s) 553, 728
XspI CTAG 5 cut(s) 329, 570, 662, 1044, 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.