FvH4_4g17580

serine threonine-protein phosphatase 2A regulatory subunit B'' subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
21498460 .. 21504217
5758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17580.t1

Sequence Viewer

Length: 1440 bp
ATGTACAGTGGTGGTTCCAGTGACGGCGAAAGCCATGAGGCCACCGCGCAGAGGAAGATCCCACCGGCTTCTTCTATGTTGTGGGTCCGCAACCTCCGCCGCTATATCGGATCCGGGGCCGGTCTCGGATCCGAGTCCCTCATGGAGCTTGAAACAAAGAGAATCTTGCTTGATATTTTCAAAGAGAAGCAACAAAAAAGTGCTGAAGCTGCCTCAATCCCAAGTTTCTATAAGAAGAAACCTGAAGAAGGATCAATTAGTCAAAGGGTCCAGAGGCTTGCCAAATATCGGTTTTTAAAGAAGCAATCCGATCTTTTGCTAAATGCTGATGATCTTGATTCCATGTGGGTTTGCTTAAGGGAAAATTGTGTGATTGATGACGCAACTGGTGCAGAAAAGATGAATTATGAAGACTTCTGTCAGATTGCCACTGTCTGTACAGGGCAGATTGGGCCTAAATGTCGTCGCTTTTTCAGCCCTTCAAATTTCATGAAGTTTGAGAAAGACGAACAAGGAAGAATTGCCATTCTGCCGTTCTATCTTTATGTGATGAGAACAGTTTCATTGACACAAGCTAGAATTGACATGAGTGAGCTTGATGAGGATTCTGATGGTTTCCTCCAACGTCATGAAATGGAAGCATATATACGAGGTCTCATACCTAATCTAGCACAACTACGGGACATGCCTGCCGGATTTCTTAACATGTATTGCCGCATAGCAGCACAGAAGTTCTTCTTTTTCTGTGACCCTCATAGACGAGGAAAAGCCTGCATAAAGAAGGTGTTATTGAGCAATTGTCTCCAGGAACTAATGGAACTGCACCAGGAAAGTGAGGAAGAAGTCACTGACAATGAGCAAGCAGAAAACTGGTTCTCCATGACATCTGCCCAGCGAATATGTGACGTGTTCCTTGGCCTTGATACAGATAATAATGGATCATTAAGCAAGCAAGAACTTCGAGAATATGCGGATGGGACGTTGACTGAGATCATCATTGAAAGAGTGTTTGATGAGCACTGTCGCCGTGGAAAAATTGGTGGAGCGAATTCTAGGGAAATGGACTTCGAAAGTTTTCTGGACTTTGTCCTGGCCTTAGAAAACAAAGACACTCCCGAAGGGCTAACATATTTGTTTCGATGCCTTGATCTTCATGGAAGGGGTTACCTTACAACAGCTGATATACACTCTCTTTTCAGGGATGTACACCAAAAATGGATTGAAGGTGGAAACTATGAGTTGTGTATTGAGGATGTAAGGGATGAAATCTGGGATATGGTTAAGCCGGCTGATCCACTAAGGATAACATTGGCTGATCTTCTTGCATGCAAGCAGGGAGGTACTGTAGCCAGCATGCTTATTGACGTGCGTGGTTTTTGGGCACATGACAATAGGGAAAATCTTCTCCAAGAAGAGGAGGAACCAGAAGAAGAAGCATAA

Protein Analysis

480

Amino Acids

54.91

Weight (kDa)

4.93

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011013)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 6 cut(s) 45, 88, 97, 100, 715, 971
AclWI GGATC 8 cut(s) 52, 105, 118, 123, 136, 259, 946, 1286
AcsI RAATTY 2 cut(s) 484, 1048
AcuI CTGAAG 2 cut(s) 225, 264
AfaI GTAC 4 cut(s) 5, 439, 1206, 1342
AfiI CCNNNNNNNGG 4 cut(s) 51, 248, 288, 1414
AflII CTTAAG 1 cut(s) 355
AflIII ACRYGT 2 cut(s) 705, 906
AgsI TTSAA 5 cut(s) 152, 181, 483, 1001, 1223
AjiI CACGTC 2 cut(s) 907, 1366
AjnI CCWGG 3 cut(s) 804, 825, 1089
AluBI AGCT 5 cut(s) 148, 209, 575, 595, 1178
AluI AGCT 5 cut(s) 148, 209, 575, 595, 1178
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 3 cut(s) 128, 659, 806
AlwI GGATC 8 cut(s) 52, 105, 118, 123, 136, 259, 946, 1286
AoxI GGCC 5 cut(s) 39, 117, 452, 916, 1092
ApeKI GCWGC 2 cut(s) 209, 722
ApoI RAATTY 2 cut(s) 484, 1048
Asp700I GAANNNNTTC 4 cut(s) 559, 734, 1074, 1401
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 4 cut(s) 85, 117, 268, 452
AsuC2I CCSGG 1 cut(s) 115
AsuII TTCGAA 1 cut(s) 1068
AvaII GGWCC 2 cut(s) 85, 268
BaeGI GKGCMC 1 cut(s) 1384
BamHI GGATCC 2 cut(s) 110, 128
BarI GAAGNNNNNNTAC 2 cut(s) 630, 662
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 2 cut(s) 196, 734
BccI CCATC 2 cut(s) 605, 968
BceAI ACGGC 3 cut(s) 40, 517, 1011
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 3 cut(s) 806, 827, 1091
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 128, 659, 806
BfaI CTAG 3 cut(s) 576, 668, 1053
BfmI CTRYAG 1 cut(s) 1344
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 4 cut(s) 100, 210, 715, 723
BlsI GCNGC 4 cut(s) 101, 211, 716, 724
Bme1390I CCNGG 4 cut(s) 115, 806, 827, 1091
Bme18I GGWCC 2 cut(s) 85, 268
BmgBI CACGTC 2 cut(s) 907, 1366
BmgT120I GGNCC 4 cut(s) 85, 117, 268, 452
BmiI GGNNCC 7 cut(s) 16, 86, 112, 118, 130, 269, 1422
BmrFI CCNGG 4 cut(s) 115, 806, 827, 1091
BmsI GCATC 1 cut(s) 1130
BoxI GACNNNNGTC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 788
Bpu14I TTCGAA 1 cut(s) 1068
BpuMI CCSGG 1 cut(s) 115
BsaI GGTCTC 2 cut(s) 128, 659
BsaJI CCNNGG 3 cut(s) 114, 913, 1027
BsaXI ACNNNNNCTCC 4 cut(s) 860, 890, 1329, 1359
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 248, 288, 1414
Bse118I RCCGGY 3 cut(s) 64, 119, 1285
Bse1I ACTGG 3 cut(s) 18, 391, 875
BseBI CCWGG 3 cut(s) 806, 827, 1091
BseDI CCNNGG 3 cut(s) 114, 913, 1027
BseGI GGATG 4 cut(s) 979, 1207, 1258, 1267
BseLI CCNNNNNNNGG 4 cut(s) 51, 248, 288, 1414
BseMII CTCAG 1 cut(s) 978
BseNI ACTGG 3 cut(s) 18, 391, 875
BseRI GAGGAG 1 cut(s) 1430
BseSI GKGCMC 1 cut(s) 1384
BseXI GCAGC 2 cut(s) 196, 734
BseYI CCCAGC 1 cut(s) 891
BsgI GTGCAG 2 cut(s) 411, 806
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 5 cut(s) 41, 119, 454, 918, 1094
BsiHKAI GWGCWC 1 cut(s) 1020
BsiSI CCGG 5 cut(s) 65, 114, 120, 693, 1286
BslFI GGGAC 3 cut(s) 121, 695, 991
BslI CCNNNNNNNGG 4 cut(s) 51, 248, 288, 1414
BsmAI GTCTC 3 cut(s) 128, 659, 806
BsmFI GGGAC 3 cut(s) 121, 695, 991
BsnI GGCC 5 cut(s) 41, 119, 454, 918, 1094
Bso31I GGTCTC 2 cut(s) 128, 659
Bsp119I TTCGAA 1 cut(s) 1068
Bsp1286I GDGCHC 2 cut(s) 1020, 1384
Bsp1407I TGTACA 3 cut(s) 3, 437, 1204
BspACI CCGC 6 cut(s) 45, 88, 97, 100, 715, 971
BspANI GGCC 5 cut(s) 41, 119, 454, 918, 1094
BspCNI CTCAG 1 cut(s) 979
BspFNI CGCG 1 cut(s) 47
BspHI TCATGA 2 cut(s) 489, 628
BspLI GGNNCC 7 cut(s) 16, 86, 112, 118, 130, 269, 1422
BspPI GGATC 8 cut(s) 52, 105, 118, 123, 136, 259, 946, 1286
BspT104I TTCGAA 1 cut(s) 1068
BspTI CTTAAG 1 cut(s) 355
BspTNI GGTCTC 2 cut(s) 128, 659
BsrFI RCCGGY 3 cut(s) 64, 119, 1285
BsrGI TGTACA 3 cut(s) 3, 437, 1204
BsrI ACTGG 3 cut(s) 18, 391, 875
BssAI RCCGGY 3 cut(s) 64, 119, 1285
BssECI CCNNGG 3 cut(s) 114, 913, 1027
BssT1I CCWWGG 1 cut(s) 913
Bst2UI CCWGG 3 cut(s) 806, 827, 1091
Bst4CI ACNGT 5 cut(s) 8, 433, 559, 1022, 1345
Bst6I CTCTTC 1 cut(s) 1407
BstAFI CTTAAG 1 cut(s) 355
BstAPI GCANNNNNTGC 1 cut(s) 389
BstAUI TGTACA 3 cut(s) 3, 437, 1204
BstBI TTCGAA 1 cut(s) 1068
BstDEI CTNAG 3 cut(s) 987, 1096, 1298
BstDSI CCRYGG 1 cut(s) 1027
BstEII GGTNACC 1 cut(s) 1163
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 4 cut(s) 979, 1207, 1258, 1267
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 49
BstMAI GTCTC 3 cut(s) 128, 659, 806
BstMWI GCNNNNNNNGC 5 cut(s) 96, 209, 389, 451, 474
BstNI CCWGG 3 cut(s) 806, 827, 1091
BstNSI RCATGY 4 cut(s) 688, 709, 1329, 1357
BstPAI GACNNNNGTC 1 cut(s) 417
BstPI GGTNACC 1 cut(s) 1163
BstSCI CCNGG 4 cut(s) 113, 804, 825, 1089
BstSFI CTRYAG 1 cut(s) 1344
BstSLI GKGCMC 1 cut(s) 1384
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 196, 734
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 3 cut(s) 57, 110, 128
BstYI RGATCY 3 cut(s) 57, 110, 128
BsuRI GGCC 5 cut(s) 41, 119, 454, 918, 1094
BtgI CCRYGG 1 cut(s) 1027
BtrI CACGTC 2 cut(s) 907, 1366
BtsCI GGATG 4 cut(s) 979, 1207, 1258, 1267
BtsIMutI CAGTG 5 cut(s) 13, 25, 429, 846, 1018
CciI TCATGA 2 cut(s) 489, 628
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 3 cut(s) 64, 119, 1285
Cfr13I GGNCC 4 cut(s) 85, 117, 268, 452
CseI GACGC 1 cut(s) 389
Csp6I GTAC 4 cut(s) 4, 438, 1205, 1341
CviQI GTAC 4 cut(s) 4, 438, 1205, 1341
DdeI CTNAG 3 cut(s) 987, 1096, 1298
DraI TTTAAA 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 1407
EarI CTCTTC 1 cut(s) 1407
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 913
Eco31I GGTCTC 2 cut(s) 128, 659
Eco47I GGWCC 2 cut(s) 85, 268
Eco57I CTGAAG 2 cut(s) 225, 264
Eco91I GGTNACC 1 cut(s) 1163
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 1163
EcoRI GAATTC 1 cut(s) 1048
EcoRII CCWGG 3 cut(s) 804, 825, 1089
EcoT14I CCWWGG 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 913
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 722, 754
FaqI GGGAC 3 cut(s) 121, 695, 991
Fnu4HI GCNGC 4 cut(s) 100, 210, 715, 723
FokI GGATG 4 cut(s) 986, 1214, 1265, 1274
Fsp4HI GCNGC 4 cut(s) 100, 210, 715, 723
FspBI CTAG 3 cut(s) 576, 668, 1053
GlaI GCGC 1 cut(s) 48
GluI GCNGC 4 cut(s) 100, 210, 715, 723
GsaI CCCAGC 1 cut(s) 895
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 5 cut(s) 41, 119, 454, 918, 1094
HapII CCGG 5 cut(s) 65, 114, 120, 693, 1286
HgaI GACGC 1 cut(s) 389
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HinfI GANTC 4 cut(s) 134, 162, 338, 605
HpaII CCGG 5 cut(s) 65, 114, 120, 693, 1286
Hpy166II GTNNAC 2 cut(s) 984, 1207
Hpy188I TCNGA 6 cut(s) 110, 128, 133, 310, 423, 610
Hpy188III TCNNGA 7 cut(s) 271, 335, 490, 629, 962, 1079, 1115
Hpy8I GTNNAC 2 cut(s) 984, 1207
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 6 cut(s) 242, 489, 775, 1112, 1152, 1217
HpyCH4III ACNGT 5 cut(s) 8, 433, 559, 1022, 1345
HpyCH4IV ACGT 4 cut(s) 625, 906, 980, 1365
HpyCH4V TGCA 5 cut(s) 392, 774, 823, 1325, 1329
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 209, 389, 451, 474
HpyF3I CTNAG 3 cut(s) 987, 1096, 1298
HpySE526I ACGT 4 cut(s) 625, 906, 980, 1365
HspAI GCGC 1 cut(s) 47
KroI GCCGGC 1 cut(s) 1285
KroNI GCCGGC 1 cut(s) 1287
LmnI GCTCC 2 cut(s) 145, 1043
Lsp1109I GCAGC 2 cut(s) 196, 734
LweI GCATC 1 cut(s) 1130
MaeI CTAG 3 cut(s) 576, 668, 1053
MaeII ACGT 4 cut(s) 625, 906, 980, 1365
MaeIII GTNAC 5 cut(s) 20, 746, 844, 902, 1163
MfeI CAATTG 1 cut(s) 796
MflI RGATCY 3 cut(s) 57, 110, 128
MhlI GDGCHC 2 cut(s) 1020, 1384
MluCI AATT 9 cut(s) 255, 364, 403, 484, 519, 579, 796, 1035, 1048
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 646
MroNI GCCGGC 1 cut(s) 1285
MroXI GAANNNNTTC 4 cut(s) 559, 734, 1074, 1401
MseI TTAA 5 cut(s) 296, 356, 702, 944, 1281
MspA1I CMGCKG 1 cut(s) 1178
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 5 cut(s) 65, 114, 120, 693, 1286
MspR9I CCNGG 4 cut(s) 115, 806, 827, 1091
MunI CAATTG 1 cut(s) 796
MvaI CCWGG 3 cut(s) 806, 827, 1091
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 5 cut(s) 96, 209, 389, 451, 474
NaeI GCCGGC 1 cut(s) 1287
NciI CCSGG 1 cut(s) 115
NgoMIV GCCGGC 1 cut(s) 1285
NlaIV GGNNCC 7 cut(s) 16, 86, 112, 118, 130, 269, 1422
NmuCI GTSAC 4 cut(s) 20, 746, 844, 902
NspI RCATGY 4 cut(s) 688, 709, 1329, 1357
NspV TTCGAA 1 cut(s) 1068
PaeI GCATGC 2 cut(s) 1329, 1357
PagI TCATGA 2 cut(s) 489, 628
PciI ACATGT 1 cut(s) 705
PdiI GCCGGC 1 cut(s) 1287
PdmI GAANNNNTTC 4 cut(s) 559, 734, 1074, 1401
PfeI GAWTC 3 cut(s) 162, 338, 605
PflFI GACNNNGTC 1 cut(s) 1085
PfoI TCCNGGA 1 cut(s) 804
PkrI GCNGC 4 cut(s) 101, 211, 716, 724
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 804, 825, 1089
PspEI GGTNACC 1 cut(s) 1163
PspFI CCCAGC 1 cut(s) 891
PspGI CCWGG 3 cut(s) 804, 825, 1089
PspN4I GGNNCC 7 cut(s) 16, 86, 112, 118, 130, 269, 1422
PspPI GGNCC 4 cut(s) 85, 117, 268, 452
PsuI RGATCY 3 cut(s) 57, 110, 128
PsyI GACNNNGTC 1 cut(s) 1085
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 4 cut(s) 5, 439, 1206, 1342
RsaNI GTAC 4 cut(s) 4, 438, 1205, 1341
SaqAI TTAA 5 cut(s) 296, 356, 702, 944, 1281
SatI GCNGC 4 cut(s) 100, 210, 715, 723
Sau96I GGNCC 4 cut(s) 85, 117, 268, 452
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 115, 806, 827, 1091
SduI GDGCHC 2 cut(s) 1020, 1384
SfaNI GCATC 1 cut(s) 1130
SfcI CTRYAG 1 cut(s) 1344
SfuI TTCGAA 1 cut(s) 1068
SinI GGWCC 2 cut(s) 85, 268
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SphI GCATGC 2 cut(s) 1329, 1357
Sse9I AATT 9 cut(s) 255, 364, 403, 484, 519, 579, 796, 1035, 1048
SsiI CCGC 6 cut(s) 45, 88, 97, 100, 715, 971
SspMI CTAG 3 cut(s) 576, 668, 1053
StyD4I CCNGG 4 cut(s) 113, 804, 825, 1089
StyI CCWWGG 1 cut(s) 913
TaaI ACNGT 5 cut(s) 8, 433, 559, 1022, 1345
TaiI ACGT 4 cut(s) 628, 909, 983, 1368
TaqI TCGA 3 cut(s) 961, 1068, 1138
TasI AATT 9 cut(s) 255, 364, 403, 484, 519, 579, 796, 1035, 1048
TatI WGTACW 3 cut(s) 3, 437, 1204
TauI GCSGC 2 cut(s) 102, 717
TfiI GAWTC 3 cut(s) 162, 338, 605
Tru1I TTAA 5 cut(s) 296, 356, 702, 944, 1281
Tru9I TTAA 5 cut(s) 296, 356, 702, 944, 1281
TscAI CASTG 5 cut(s) 13, 25, 436, 853, 1025
TseFI GTSAC 4 cut(s) 20, 746, 844, 902
TseI GCWGC 2 cut(s) 209, 722
Tsp45I GTSAC 4 cut(s) 20, 746, 844, 902
TspDTI ATGAA 8 cut(s) 416, 423, 478, 506, 552, 645, 1142, 1278
TspRI CASTG 5 cut(s) 13, 25, 436, 853, 1025
Tth111I GACNNNGTC 1 cut(s) 1085
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 85, 268
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 2 cut(s) 484, 1048
XceI RCATGY 4 cut(s) 688, 709, 1329, 1357
XmnI GAANNNNTTC 4 cut(s) 559, 734, 1074, 1401
XspI CTAG 3 cut(s) 576, 668, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.