Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011013

Physical Location & Seq

Genomic Coordinates Forward (+)

30221592 .. 30223167

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0171900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCAGCAATGGTAGCACGAGTAACTCTGGATCACATTGCCAGACAATCCAACGACATTAGGCGCCTCGCCGATTTCTACATAGAGACATTTGGATTCGAGGAGGTAGAGAGCCCAAAGATTGGGCCACTCAAGGTAATATGGCTGAGTTTACCCTCAGGTTTTACTATACACCTTATTGAGTCCAACCCAAGTTACCCACCTAACCAGAGGAACGACACATCACCGGGAGCCGACCCAGCCCGTATTCCCAGAGGCCACCATATGTGCTTCTGTGTCTCCAATTTCGAAACCTTTGTGCAAACACTCAAGGAAAAAGGAATTCAGATTGCTCATAGGCCAGTTCAATTTAATCCAAATGGCAGTAAGAAGATCGACCAGGTCTTTTTCTTTGATCCAGATGGCAACGCTTTGGAAGTTTCTGACTCCACGGCACTACAATGGAATGCTCGAAATGGCAATGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016043 GO:0016049 GO:0022402 GO:0022607 GO:0030865 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

5.93

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	10 - 140	3.6e-11	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	11 - 117	2.4e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18580
fragaria_vesca	FvH4_4g17580 FvH4_4g17580
malus_domestica	MD13G1171500.v1.1 MD16G1173200.v1.1
prunus_persica	Prupe.1G140000_v2.0.a1 Prupe.1G140000_v2.0.a1
pyrus_communis	pycom13g14720 pycom16g14520
rosa_chinensis	RchiOBHm_Chr4g0421481
rosa_laevigata	RLG00000007676
rosa_multiflora	Rmu_sc0001962.1_g000024
rosa_roxburghii	Rroxscaffold_5G00363740
rosa_rugosa	Rorug04G0171800 Rorug04G0171900
rosa_samantha	Rh4AG232400 Rh4BG235200 Rh4CG246700 Rh4DG230900
rosa_wichuraiana	Rw4G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccB7I	CCANNNNNTGG	1 cut(s)	122
AclWI	GGATC	2 cut(s)	39, 389
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	80, 283
AlwI	GGATC	2 cut(s)	39, 389
AoxI	GGCC	3 cut(s)	125, 256, 338
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	288
AxyI	CCTNAGG	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	80, 283
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	228, 380
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	65, 232
BmrFI	CCNGG	2 cut(s)	228, 380
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	116, 293
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	157
Bse3DI	GCAATG	3 cut(s)	15, 36, 466
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	3 cut(s)	15, 36, 466
BseMII	CTCAG	2 cut(s)	137, 171
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	3 cut(s)	127, 258, 340
BshNI	GGYRCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	80, 283
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	127, 258, 340
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	31, 372, 394
BspANI	GGCC	3 cut(s)	127, 258, 340
BspCNI	CTCAG	2 cut(s)	138, 170
BspLI	GGNNCC	2 cut(s)	65, 232
BspPI	GGATC	2 cut(s)	39, 389
BspT104I	TTCGAA	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	63
BsrDI	GCAATG	3 cut(s)	15, 36, 466
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	31, 372, 394
BssNI	GRCGYC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	146, 157
BstDSI	CCRYGG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	3 cut(s)	34, 375, 397
BstMAI	GTCTC	2 cut(s)	80, 283
BstMBI	GATC	3 cut(s)	31, 372, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 239
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	226, 378
BstV1I	GCAGC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	127, 258, 340
BtgI	CCRYGG	1 cut(s)	429
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	378
CviJI	RGCY	7 cut(s)	114, 127, 145, 233, 242, 258, 340
CviKI_1	RGCY	7 cut(s)	114, 127, 145, 233, 242, 258, 340
DdeI	CTNAG	2 cut(s)	146, 157
DinI	GGCGCC	1 cut(s)	65
DpnI	GATC	3 cut(s)	33, 374, 396
DpnII	GATC	3 cut(s)	31, 372, 394
Eco24I	GRGCYC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	116
EgeI	GGCGCC	1 cut(s)	65
EheI	GGCGCC	1 cut(s)	65
FaiI	YATR	6 cut(s)	83, 142, 170, 264, 266, 336
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	127, 258, 340
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	96, 182, 425
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	327, 424
Hpy188III	TCNNGA	2 cut(s)	29, 398
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	301, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 239
HpyF3I	CTNAG	2 cut(s)	146, 157
Hsp92I	GRCGYC	1 cut(s)	64
HspAI	GCGC	1 cut(s)	64
KasI	GGCGCC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	31, 372, 394
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	22, 194
MalI	GATC	3 cut(s)	33, 374, 396
MboI	GATC	3 cut(s)	31, 372, 394
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	283, 321, 347
Mly113I	GGCGCC	1 cut(s)	64
MlyI	GAGTC	2 cut(s)	191, 419
MmeI	TCCRAC	2 cut(s)	75, 210
MnlI	CCTC	6 cut(s)	77, 94, 97, 166, 204, 248
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	228, 380
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	14, 239
NarI	GGCGCC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	3 cut(s)	31, 372, 394
NlaIV	GGNNCC	2 cut(s)	65, 232
NspV	TTCGAA	1 cut(s)	288
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	190, 419
PluTI	GGCGCC	1 cut(s)	67
PpsI	GAGTC	2 cut(s)	190, 419
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	65, 232
PspPI	GGNCC	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	31, 372, 394
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	191, 419
ScrFI	CCNGG	2 cut(s)	228, 380
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	7 cut(s)	108, 138, 163, 177, 205, 296, 384
SexAI	ACCWGGT	1 cut(s)	378
SfoI	GGCGCC	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	439
SmlI	CTYRAG	2 cut(s)	131, 308
SmoI	CTYRAG	2 cut(s)	131, 308
Sse9I	AATT	3 cut(s)	283, 321, 347
SspDI	GGCGCC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	226, 378
TaqI	TCGA	4 cut(s)	99, 288, 375, 451
TasI	AATT	3 cut(s)	283, 321, 347
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	1 cut(s)	5
Tth111I	GACNNNGTC	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.