MD13G1171500.v1.1

serine threonine-protein phosphatase 2A regulatory subunit B'' subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
14004354 .. 14009331
4978 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1171500.v1.1.491

Sequence Viewer

Length: 1281 bp
ATGTACAGTGTGTCCAGCGACGGCGAAGGCCATGAGGCCTCGCAGAGGAAGATCCCTCCGGCCTCCTCCATGCTTTGGGTCCGTAACCTCCGCCGCTTCATCGGATCCGGTGCCGGACTCGGATCCGAAGCCCTCATGGAGCTTGAAACAAAGAGAATCTTGCTTGATATTTTCAAAGAGAAGCAACAAAAAAGTGCTGAAGCTGGCACAATCCCGAGTTTTTACAAGAAGAAACCTGAAGAAGGATCTATTAGTCAGAGGGTCCAGAGGCTGGCAAAATATCGGTTTTTAAAGAAGCAATCAGATCTTTTGCTGAATGCGGATGATCTAGATGCTATGTGGGTGTGCTTAAGGGAAAATTGTGTGATTGATGATGCAACTGGTGCAGAAAAGATGAACTATGAGGACTTTTGCCACATTGCCTCTGTCTGTACGGAGCAGATAGGGCCTAAATGCCGGCGCTTTTTCAGCCCTTCAAATTTCATGAAATTTGAGAAAGATGAACAAGGAAGAATTGCCATTCTGCCCTTTTACCTTTATGTGATGAGAACGGTGTCACTTACTCAAGCTAGAATTGACATGAGCGAACTTGATGAGGATTCTGATGGTTTTCTTCAGCCTCATGAAATGGAAGCCTATATACGAGGCCTTATACCTAATCTAGCGCAATTACGGGACATGCCTTCAGGCTTTAGTGCAATGTATTGCCGCATAGCTGCACAAAAGTTCTTCTTCTTTTGTGACCCTCATAGACGAGGAAAAGCCTGCATAAAGAAGGTGTTATTGAGTAATTGTCTCCAGGAACTAATGGAACTGCACCAGGAAAGTGAGGAAGAAGTCACTGACAATGAGCAAGCTGAAAACTGGTTCTCTTTGACATCCGCCCAGCGCATATGTGACATGTTCATTGCTCTTGATAAAGATTCGAGTCAATCATTGAGCAAGCAGGAACTTCGAGAATATGCGGATGGGACATTGACTGAAATTATCATTGAAAGAGTGTTTGATGAGCACGTTCAGCGTGGAAAAAGTGGAGGAAGCTCTAGGGAAATGGACTTTGATAGTTTTCTGGACTTTGTCCTGGCCTTAGAAAACAAAGACACCCCAGAGGGTTTAACATATTTGTTTCGATGTCTTGATCTTCAAGGAAGGGGTTACCTTACAACAGCTGATATACACTCTCTTTTCAGAACTTTATCTGGTGGTACAACTTCTGTTGTCAAAAGTTTGTTGCTTTGCTTGGCTGCTGGTGCAAAATGTAAGTATTGCCTTTTGCCATGA

Protein Analysis

427

Amino Acids

48.4

Weight (kDa)

5.42

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011013)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 2 cut(s) 75, 271
AciI CCGC 6 cut(s) 91, 94, 320, 709, 882, 965
AclWI GGATC 6 cut(s) 46, 99, 112, 117, 130, 253
AcsI RAATTY 2 cut(s) 478, 488
AcuI CTGAAG 4 cut(s) 219, 258, 599, 669
AfaI GTAC 3 cut(s) 5, 433, 1207
AfiI CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
AflII CTTAAG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 900
AgsI TTSAA 5 cut(s) 146, 175, 477, 995, 1145
AjnI CCWGG 3 cut(s) 798, 819, 1080
AluBI AGCT 7 cut(s) 142, 203, 569, 716, 857, 1041, 1169
AluI AGCT 7 cut(s) 142, 203, 569, 716, 857, 1041, 1169
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 6 cut(s) 46, 99, 112, 117, 130, 253
AlwNI CAGNNNCTG 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 6 cut(s) 28, 36, 60, 446, 646, 1083
ApeKI GCWGC 2 cut(s) 716, 1244
ApoI RAATTY 2 cut(s) 478, 488
AspLEI GCGC 3 cut(s) 462, 667, 891
AspS9I GGNCC 3 cut(s) 79, 262, 446
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 2 cut(s) 79, 262
BamHI GGATCC 2 cut(s) 104, 122
BanI GGYRCC 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 703, 1231
BccI CCATC 2 cut(s) 599, 962
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 3 cut(s) 800, 821, 1082
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 4 cut(s) 329, 570, 662, 1044
BfoI RGCGCY 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 349
BglII AGATCT 1 cut(s) 304
BisI GCNGC 4 cut(s) 94, 709, 717, 1245
BlsI GCNGC 4 cut(s) 95, 710, 718, 1246
Bme1390I CCNGG 3 cut(s) 800, 821, 1082
Bme18I GGWCC 2 cut(s) 79, 262
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 79, 262, 446
BmiI GGNNCC 5 cut(s) 80, 106, 112, 124, 263
BmrFI CCNGG 3 cut(s) 800, 821, 1082
BmsI GCATC 2 cut(s) 322, 364
BpmI CTGGAG 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 549
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 2 cut(s) 385, 869
Bse3DI GCAATG 3 cut(s) 417, 705, 906
BseBI CCWGG 3 cut(s) 800, 821, 1082
BseGI GGATG 3 cut(s) 328, 878, 973
BseLI CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
BseMI GCAATG 3 cut(s) 417, 705, 906
BseNI ACTGG 2 cut(s) 385, 869
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 703, 1231
BseYI CCCAGC 1 cut(s) 885
BsgI GTGCAG 3 cut(s) 405, 702, 800
BshFI GGCC 6 cut(s) 30, 38, 62, 448, 648, 1085
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 1014
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 4 cut(s) 59, 108, 114, 457
BslFI GGGAC 2 cut(s) 689, 985
BslI CCNNNNNNNGG 4 cut(s) 45, 75, 242, 271
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 2 cut(s) 689, 985
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 6 cut(s) 30, 38, 62, 448, 648, 1085
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 1014
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
BspACI CCGC 6 cut(s) 91, 94, 320, 709, 882, 965
BspANI GGCC 6 cut(s) 30, 38, 62, 448, 648, 1085
BspHI TCATGA 2 cut(s) 483, 622
BspLI GGNNCC 5 cut(s) 80, 106, 112, 124, 263
BspPI GGATC 6 cut(s) 46, 99, 112, 117, 130, 253
BspT107I GGYRCC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 349
BsrDI GCAATG 3 cut(s) 417, 705, 906
BsrFI RCCGGY 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 385, 869
BssAI RCCGGY 1 cut(s) 456
BssMI GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
Bst2UI CCWGG 3 cut(s) 800, 821, 1082
Bst4CI ACNGT 2 cut(s) 8, 553
BstAFI CTTAAG 1 cut(s) 349
BstAPI GCANNNNNTGC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 6 cut(s) 205, 273, 458, 766, 855, 944
BstDEI CTNAG 1 cut(s) 1087
BstEII GGTNACC 1 cut(s) 1154
BstENI CCTNNNNNAGG 2 cut(s) 43, 240
BstF5I GGATG 3 cut(s) 328, 878, 973
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 3 cut(s) 462, 667, 891
BstKTI GATC 7 cut(s) 54, 107, 125, 248, 307, 328, 1141
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 383, 445, 468, 1018, 1250
BstNI CCWGG 3 cut(s) 800, 821, 1082
BstNSI RCATGY 2 cut(s) 682, 904
BstPI GGTNACC 1 cut(s) 1154
BstSCI CCNGG 3 cut(s) 798, 819, 1080
BstV1I GCAGC 2 cut(s) 703, 1231
BstX2I RGATCY 5 cut(s) 51, 104, 122, 245, 304
BstYI RGATCY 5 cut(s) 51, 104, 122, 245, 304
BsuRI GGCC 6 cut(s) 30, 38, 62, 448, 648, 1085
BtsCI GGATG 3 cut(s) 328, 878, 973
BtsIMutI CAGTG 2 cut(s) 13, 840
Cac8I GCNNGC 6 cut(s) 205, 273, 458, 766, 855, 944
CaiI CAGNNNCTG 1 cut(s) 271
CciI TCATGA 2 cut(s) 483, 622
CfoI GCGC 3 cut(s) 462, 667, 891
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 79, 262, 446
Csp6I GTAC 3 cut(s) 4, 432, 1206
CviAII CATG 9 cut(s) 32, 70, 136, 484, 580, 623, 679, 901, 1278
CviQI GTAC 3 cut(s) 4, 432, 1206
DdeI CTNAG 1 cut(s) 1087
DpnI GATC 7 cut(s) 53, 106, 124, 247, 306, 327, 1140
DpnII GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
DraI TTTAAA 1 cut(s) 291
EciI GGCGGA 2 cut(s) 80, 871
Eco147I AGGCCT 2 cut(s) 38, 648
Eco47I GGWCC 2 cut(s) 79, 262
Eco57I CTGAAG 4 cut(s) 219, 258, 599, 669
Eco88I CYCGRG 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 1154
EcoNI CCTNNNNNAGG 2 cut(s) 43, 240
EcoO109I RGGNCCY 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 1154
EcoRII CCWGG 3 cut(s) 798, 819, 1080
FaeI CATG 9 cut(s) 35, 73, 139, 487, 583, 626, 682, 904, 1281
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 716, 748
FaqI GGGAC 2 cut(s) 689, 985
FatI CATG 9 cut(s) 31, 69, 135, 483, 579, 622, 678, 900, 1277
FauNDI CATATG 1 cut(s) 893
Fnu4HI GCNGC 4 cut(s) 94, 709, 717, 1245
FokI GGATG 3 cut(s) 335, 865, 980
Fsp4HI GCNGC 4 cut(s) 94, 709, 717, 1245
FspBI CTAG 4 cut(s) 329, 570, 662, 1044
GlaI GCGC 3 cut(s) 461, 666, 890
GluI GCNGC 4 cut(s) 94, 709, 717, 1245
GsaI CCCAGC 1 cut(s) 889
GsuI CTGGAG 1 cut(s) 782
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 6 cut(s) 30, 38, 62, 448, 648, 1085
HapII CCGG 4 cut(s) 59, 108, 114, 457
HhaI GCGC 3 cut(s) 462, 667, 891
Hin1II CATG 9 cut(s) 35, 73, 139, 487, 583, 626, 682, 904, 1281
Hin6I GCGC 3 cut(s) 460, 665, 889
HinP1I GCGC 3 cut(s) 460, 665, 889
HinfI GANTC 5 cut(s) 117, 156, 599, 923, 928
HpaII CCGG 4 cut(s) 59, 108, 114, 457
Hpy188I TCNGA 7 cut(s) 104, 122, 127, 258, 304, 604, 1190
Hpy188III TCNNGA 9 cut(s) 214, 265, 329, 484, 623, 914, 956, 1070, 1136
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 6 cut(s) 20, 236, 483, 693, 769, 1143
HpyCH4III ACNGT 2 cut(s) 8, 553
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 7 cut(s) 377, 386, 698, 719, 768, 817, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 383, 445, 468, 1018, 1250
HpyF3I CTNAG 1 cut(s) 1087
HpySE526I ACGT 1 cut(s) 1014
Hsp92II CATG 9 cut(s) 35, 73, 139, 487, 583, 626, 682, 904, 1281
HspAI GCGC 3 cut(s) 460, 665, 889
KroI GCCGGC 1 cut(s) 456
KroNI GCCGGC 1 cut(s) 458
Kzo9I GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
LmnI GCTCC 2 cut(s) 139, 436
Lsp1109I GCAGC 2 cut(s) 703, 1231
LweI GCATC 2 cut(s) 322, 364
MaeI CTAG 4 cut(s) 329, 570, 662, 1044
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 6 cut(s) 83, 555, 740, 838, 896, 1154
MalI GATC 7 cut(s) 53, 106, 124, 247, 306, 327, 1140
MboI GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
MboII GAAGA 9 cut(s) 61, 241, 251, 522, 605, 721, 724, 845, 1133
MflI RGATCY 5 cut(s) 51, 104, 122, 245, 304
MhlI GDGCHC 1 cut(s) 1014
MluCI AATT 8 cut(s) 358, 478, 488, 513, 573, 668, 790, 984
MlyI GAGTC 2 cut(s) 111, 937
MroNI GCCGGC 1 cut(s) 456
MseI TTAA 3 cut(s) 290, 350, 1115
MspA1I CMGCKG 1 cut(s) 1169
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 4 cut(s) 59, 108, 114, 457
MspR9I CCNGG 3 cut(s) 800, 821, 1082
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 3 cut(s) 800, 821, 1082
MwoI GCNNNNNNNGC 5 cut(s) 383, 445, 468, 1018, 1250
NaeI GCCGGC 1 cut(s) 458
NdeI CATATG 1 cut(s) 893
NdeII GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
NgoMIV GCCGGC 1 cut(s) 456
NlaIII CATG 9 cut(s) 35, 73, 139, 487, 583, 626, 682, 904, 1281
NlaIV GGNNCC 5 cut(s) 80, 106, 112, 124, 263
NmuCI GTSAC 4 cut(s) 555, 740, 838, 896
NspI RCATGY 2 cut(s) 682, 904
PagI TCATGA 2 cut(s) 483, 622
PceI AGGCCT 2 cut(s) 38, 648
PciI ACATGT 1 cut(s) 900
PctI GAATGC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 458
PfeI GAWTC 3 cut(s) 156, 599, 923
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 2 cut(s) 75, 271
PfoI TCCNGGA 1 cut(s) 798
PkrI GCNGC 4 cut(s) 95, 710, 718, 1246
PleI GAGTC 2 cut(s) 111, 936
PpsI GAGTC 2 cut(s) 111, 936
PscI ACATGT 1 cut(s) 900
Psp6I CCWGG 3 cut(s) 798, 819, 1080
PspEI GGTNACC 1 cut(s) 1154
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 3 cut(s) 798, 819, 1080
PspN4I GGNNCC 5 cut(s) 80, 106, 112, 124, 263
PspPI GGNCC 3 cut(s) 79, 262, 446
PstNI CAGNNNCTG 1 cut(s) 271
PsuI RGATCY 5 cut(s) 51, 104, 122, 245, 304
PsyI GACNNNGTC 1 cut(s) 1076
PvuII CAGCTG 1 cut(s) 1169
RsaI GTAC 3 cut(s) 5, 433, 1207
RsaNI GTAC 3 cut(s) 4, 432, 1206
SaqAI TTAA 3 cut(s) 290, 350, 1115
SatI GCNGC 4 cut(s) 94, 709, 717, 1245
Sau3AI GATC 7 cut(s) 51, 104, 122, 245, 304, 325, 1138
Sau96I GGNCC 3 cut(s) 79, 262, 446
SchI GAGTC 2 cut(s) 111, 937
ScrFI CCNGG 3 cut(s) 800, 821, 1082
SduI GDGCHC 1 cut(s) 1014
SfaNI GCATC 2 cut(s) 322, 364
SinI GGWCC 2 cut(s) 79, 262
SmlI CTYRAG 2 cut(s) 349, 564
SmoI CTYRAG 2 cut(s) 349, 564
Sse9I AATT 8 cut(s) 358, 478, 488, 513, 573, 668, 790, 984
SseBI AGGCCT 2 cut(s) 38, 648
SsiI CCGC 6 cut(s) 91, 94, 320, 709, 882, 965
SspMI CTAG 4 cut(s) 329, 570, 662, 1044
StuI AGGCCT 2 cut(s) 38, 648
StyD4I CCNGG 3 cut(s) 798, 819, 1080
TaaI ACNGT 2 cut(s) 8, 553
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 3 cut(s) 926, 955, 1129
TasI AATT 8 cut(s) 358, 478, 488, 513, 573, 668, 790, 984
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 96, 711
TfiI GAWTC 3 cut(s) 156, 599, 923
Tru1I TTAA 3 cut(s) 290, 350, 1115
Tru9I TTAA 3 cut(s) 290, 350, 1115
TscAI CASTG 2 cut(s) 13, 847
TseFI GTSAC 4 cut(s) 555, 740, 838, 896
TseI GCWGC 2 cut(s) 716, 1244
Tsp45I GTSAC 4 cut(s) 555, 740, 838, 896
TspDTI ATGAA 7 cut(s) 88, 410, 472, 500, 516, 639, 895
TspGWI ACGGA 2 cut(s) 71, 449
TspRI CASTG 2 cut(s) 13, 847
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 2 cut(s) 75, 271
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 79, 262
XagI CCTNNNNNAGG 2 cut(s) 43, 240
XapI RAATTY 2 cut(s) 478, 488
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 2 cut(s) 682, 904
XspI CTAG 4 cut(s) 329, 570, 662, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.