AT5G19050

Protein of unknown function (DUF1749)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008083
Physical Location & Seq
Forward (+)
6369004 .. 6371906
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19050.1

Sequence Viewer

Length: 1086 bp
ATGTCTCTCTCGCTTCCATCTTCTTCCGCCGCCGCTGCTGCGGCGTCAACATCGGGATCATCATCTTCTCCGGCGGCTGCTTCGTCTTCCTCAACAACCACGTCATGGTTCTCCGGGATCGTTCGTGGTCGTGGTGATAAATCCGGCACCGCGAAGCTATCTAAAAGCTCTTCCATGGCTGGAGGAGGAAGCGGAAGCGGAGATTACGGTGGACCAATCAAAGGGAAGAATCAATTTCGCGGTGTTTTGTTCAAATACGGTCCTAAATCAATTCAGGTTGCTTTTAAGACCGGAGAGTATAAACAACAAGTGATATTTATCGGTGGATTAACTGATGGACTTTTAGCTACTGATTACTTGGAACCTCTTGCGATTGCTTTGGATAAAGAGAAATGGTCACTTGTTCAACTACTGATGTCTTCTTCATATTCTGGATTTGGCACTTCCAGCTTGAAACAAGATGCACAAGAAATCGACCAGCTAATAAACCACCTCATCAACAAAGAGAATTCTGAAGGTGTTGTTCTGCTTGGTCATAGCACTGGCTGTCAGGACATTGTGTATTATATGGGAACAAATGCGGCATGCTCCCGAGCTGTCCGGGCTGCAATTTTACAGGCACCAGTCAGCGATAGAGAGTACAAAGCAACGCTTCCTGAAACACCTGCTATGATAGACTTGGCTGCAAACATGATAAAAGAAGGTCGAGGAGAGGAGCTAATGCCTAGAGAAGCTGATCCTTGTGCTCCAATCTCTGCTTATAGATATCACTCCCTCTGCGCTTACATGGGAGATGACGATATGTTTAGTTCTGACCTTAGTGATGATCAGTTGAAAACTAGACTTGGCCATATGGCTAACACACCTTGTCAGGTGATTTTCTCCATGGGTGATGAGTATGTACCAGATTATGTCGACAAAAAAGCATTGGTCAATAGATTAAGTAAAGCAATGGGAGGAGCAGAGAAAGTGGAGATAGAGCATGGGAATCATTCTCTCTCCAATAGAGTTCATGAAGCTGTTCAAGCCATCATTGGTTTTGTCAAAAGAGAAGGACCCAGTGGTTGGGATGATCCTTGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

361

Amino Acids

38.42

Weight (kDa)

5.7

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 80 - 322 2.5e-69 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 673
AccB1I GGYRCC 2 cut(s) 146, 619
AccB7I CCANNNNNTGG 2 cut(s) 105, 1065
AccI GTMKAC 1 cut(s) 915
AccII CGCG 2 cut(s) 152, 240
AclWI GGATC 4 cut(s) 64, 125, 731, 1067
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 641, 903
AfiI CCNNNNNNNGG 3 cut(s) 105, 221, 1065
AgsI TTSAA 5 cut(s) 253, 407, 454, 835, 1025
AjiI CACGTC 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 4 cut(s) 64, 125, 731, 1067
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 1 cut(s) 847
ApeKI GCWGC 5 cut(s) 35, 38, 77, 605, 683
ApoI RAATTY 1 cut(s) 508
Asp700I GAANNNNTTC 1 cut(s) 1020
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 3 cut(s) 212, 260, 1055
AsuC2I CCSGG 2 cut(s) 115, 602
AsuHPI GGTGA 3 cut(s) 146, 886, 902
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 212, 260, 1055
BalI TGGCCA 1 cut(s) 849
BanI GGYRCC 2 cut(s) 146, 619
BbsI GAAGAC 2 cut(s) 78, 411
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 5 cut(s) 22, 25, 64, 592, 670
BccI CCATC 3 cut(s) 25, 329, 1037
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 2 cut(s) 115, 602
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 726, 840
BfuAI ACCTGC 1 cut(s) 673
Bme1390I CCNGG 2 cut(s) 115, 602
Bme18I GGWCC 3 cut(s) 212, 260, 1055
BmeT110I CYCGRG 1 cut(s) 591
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 212, 260, 1055
BmiI GGNNCC 4 cut(s) 148, 363, 621, 1057
BmrFI CCNGG 2 cut(s) 115, 602
BmrI ACTGGG 1 cut(s) 1053
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 1 cut(s) 1053
BpiI GAAGAC 2 cut(s) 78, 411
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 115, 602
BsaBI GATNNNNATC 2 cut(s) 61, 317
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 174, 885, 1076
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 221, 1065
Bse1I ACTGG 3 cut(s) 547, 623, 1059
Bse3DI GCAATG 1 cut(s) 957
Bse8I GATNNNNATC 2 cut(s) 61, 317
BseDI CCNNGG 3 cut(s) 174, 885, 1076
BseGI GGATG 1 cut(s) 1075
BseJI GATNNNNATC 2 cut(s) 61, 317
BseLI CCNNNNNNNGG 3 cut(s) 105, 221, 1065
BseMI GCAATG 1 cut(s) 957
BseNI ACTGG 3 cut(s) 547, 623, 1059
BseRI GAGGAG 4 cut(s) 198, 723, 728, 972
BseXI GCAGC 5 cut(s) 22, 25, 64, 592, 670
Bsh1236I CGCG 2 cut(s) 152, 240
BshFI GGCC 1 cut(s) 849
BshNI GGYRCC 2 cut(s) 146, 619
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 5 cut(s) 71, 114, 144, 291, 601
BslI CCNNNNNNNGG 3 cut(s) 105, 221, 1065
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 849
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 5 cut(s) 56, 117, 736, 826, 1072
Bsp19I CCATGG 2 cut(s) 174, 885
BspANI GGCC 1 cut(s) 849
BspFNI CGCG 2 cut(s) 152, 240
BspHI TCATGA 1 cut(s) 1012
BspLI GGNNCC 4 cut(s) 148, 363, 621, 1057
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 4 cut(s) 64, 125, 731, 1067
BspQI GCTCTTC 1 cut(s) 175
BspT107I GGYRCC 2 cut(s) 146, 619
BsrDI GCAATG 1 cut(s) 957
BsrI ACTGG 3 cut(s) 547, 623, 1059
BssECI CCNNGG 3 cut(s) 174, 885, 1076
BssMI GATC 5 cut(s) 56, 117, 736, 826, 1072
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 3 cut(s) 174, 885, 1076
Bst4CI ACNGT 2 cut(s) 209, 260
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 1 cut(s) 818
BstDSI CCRYGG 2 cut(s) 174, 885
BstF5I GGATG 1 cut(s) 1075
BstFNI CGCG 2 cut(s) 152, 240
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 5 cut(s) 59, 120, 739, 829, 1075
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 5 cut(s) 56, 117, 736, 826, 1072
BstMWI GCNNNNNNNGC 6 cut(s) 35, 38, 41, 447, 602, 1025
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 2 cut(s) 113, 600
BstUI CGCG 2 cut(s) 152, 240
BstV1I GCAGC 5 cut(s) 22, 25, 64, 592, 670
BstV2I GAAGAC 2 cut(s) 78, 411
BsuRI GGCC 1 cut(s) 849
BtgI CCRYGG 2 cut(s) 174, 885
BtrI CACGTC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 1075
BtsIMutI CAGTG 2 cut(s) 540, 1066
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 586
CciI TCATGA 1 cut(s) 1012
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 3 cut(s) 212, 260, 1055
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 640, 902
CviAII CATG 8 cut(s) 105, 175, 585, 691, 787, 886, 983, 1013
CviQI GTAC 2 cut(s) 640, 902
DdeI CTNAG 1 cut(s) 818
DpnI GATC 5 cut(s) 58, 119, 738, 828, 1074
DpnII GATC 5 cut(s) 56, 117, 736, 826, 1072
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 3 cut(s) 174, 885, 1076
Eco32I GATATC 1 cut(s) 767
Eco47I GGWCC 3 cut(s) 212, 260, 1055
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 1055
EcoRI GAATTC 1 cut(s) 508
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 3 cut(s) 174, 885, 1076
ErhI CCWWGG 3 cut(s) 174, 885, 1076
FaeI CATG 8 cut(s) 108, 178, 588, 694, 790, 889, 986, 1016
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 8 cut(s) 104, 174, 584, 690, 786, 885, 982, 1012
FauNDI CATATG 1 cut(s) 852
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 1 cut(s) 915
FokI GGATG 1 cut(s) 1082
FspBI CTAG 2 cut(s) 726, 840
GlaI GCGC 1 cut(s) 781
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 849
HapII CCGG 5 cut(s) 71, 114, 144, 291, 601
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 782
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 8 cut(s) 108, 178, 588, 694, 790, 889, 986, 1016
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HincII GTYRAC 2 cut(s) 48, 916
HindII GTYRAC 2 cut(s) 48, 916
HinfI GANTC 2 cut(s) 229, 988
HpaII CCGG 5 cut(s) 71, 114, 144, 291, 601
HphI GGTGA 3 cut(s) 146, 886, 902
Hpy166II GTNNAC 3 cut(s) 48, 212, 916
Hpy188I TCNGA 2 cut(s) 514, 814
Hpy188III TCNNGA 6 cut(s) 54, 432, 551, 591, 656, 1013
Hpy8I GTNNAC 3 cut(s) 48, 212, 916
HpyAV CCTTC 3 cut(s) 509, 695, 1046
HpyCH4III ACNGT 2 cut(s) 209, 260
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 464, 608, 686
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 38, 41, 447, 602, 1025
HpyF3I CTNAG 1 cut(s) 818
HpySE526I ACGT 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 8 cut(s) 108, 178, 588, 694, 790, 889, 986, 1016
HspAI GCGC 1 cut(s) 780
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 56, 117, 736, 826, 1072
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 5 cut(s) 593, 715, 751, 959, 1080
Lsp1109I GCAGC 5 cut(s) 22, 25, 64, 592, 670
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 726, 840
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 396
MalI GATC 5 cut(s) 58, 119, 738, 828, 1074
MboI GATC 5 cut(s) 56, 117, 736, 826, 1072
MboII GAAGA 8 cut(s) 12, 15, 57, 78, 162, 238, 411, 414
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 4 cut(s) 233, 270, 508, 609
MluNI TGGCCA 1 cut(s) 849
MnlI CCTC 9 cut(s) 100, 176, 179, 375, 503, 701, 706, 785, 950
Mox20I TGGCCA 1 cut(s) 849
MroXI GAANNNNTTC 1 cut(s) 1020
MscI TGGCCA 1 cut(s) 849
MseI TTAA 3 cut(s) 285, 329, 941
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 5 cut(s) 71, 114, 144, 291, 601
MspR9I CCNGG 2 cut(s) 115, 602
MvnI CGCG 2 cut(s) 152, 240
MwoI GCNNNNNNNGC 6 cut(s) 35, 38, 41, 447, 602, 1025
NciI CCSGG 2 cut(s) 115, 602
NcoI CCATGG 2 cut(s) 174, 885
NdeI CATATG 1 cut(s) 852
NdeII GATC 5 cut(s) 56, 117, 736, 826, 1072
NlaIII CATG 8 cut(s) 108, 178, 588, 694, 790, 889, 986, 1016
NlaIV GGNNCC 4 cut(s) 148, 363, 621, 1057
NmuCI GTSAC 1 cut(s) 396
NspI RCATGY 1 cut(s) 588
PaeI GCATGC 1 cut(s) 588
PagI TCATGA 1 cut(s) 1012
PaqCI CACCTGC 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 1020
PfeI GAWTC 2 cut(s) 229, 988
PflMI CCANNNNNTGG 2 cut(s) 105, 1065
PfoI TCCNGGA 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 1055
Psp5II RGGWCCY 1 cut(s) 1055
PspN4I GGNNCC 4 cut(s) 148, 363, 621, 1057
PspPI GGNCC 3 cut(s) 212, 260, 1055
PspPPI RGGWCCY 1 cut(s) 1055
RsaI GTAC 2 cut(s) 641, 903
RsaNI GTAC 2 cut(s) 640, 902
SalI GTCGAC 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 285, 329, 941
Sau3AI GATC 5 cut(s) 56, 117, 736, 826, 1072
Sau96I GGNCC 3 cut(s) 212, 260, 1055
ScrFI CCNGG 2 cut(s) 115, 602
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 3 cut(s) 212, 260, 1055
SphI GCATGC 1 cut(s) 588
Sse9I AATT 4 cut(s) 233, 270, 508, 609
SspMI CTAG 2 cut(s) 726, 840
StyD4I CCNGG 2 cut(s) 113, 600
StyI CCWWGG 3 cut(s) 174, 885, 1076
TaaI ACNGT 2 cut(s) 209, 260
TaiI ACGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 474, 706, 915
TasI AATT 4 cut(s) 233, 270, 508, 609
TatI WGTACW 1 cut(s) 639
TauI GCSGC 5 cut(s) 32, 35, 44, 77, 584
TfiI GAWTC 2 cut(s) 229, 988
Tru1I TTAA 3 cut(s) 285, 329, 941
Tru9I TTAA 3 cut(s) 285, 329, 941
TscAI CASTG 2 cut(s) 547, 1066
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 5 cut(s) 35, 38, 77, 605, 683
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 3 cut(s) 414, 1001, 1029
TspRI CASTG 2 cut(s) 547, 1066
Van91I CCANNNNNTGG 2 cut(s) 105, 1065
VpaK11BI GGWCC 3 cut(s) 212, 260, 1055
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 915
XmnI GAANNNNTTC 1 cut(s) 1020
XspI CTAG 2 cut(s) 726, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.