Rh4AG214200

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008083
Physical Location & Seq
Reverse (-)
50819902 .. 50824343
4442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG214200.1

Sequence Viewer

Length: 1026 bp
ATGAATCCCTCGCTGTCTTCTTCTTCTCCTCCGTCTTCTACTTCGGCTTCCGCCGGTTCCTGGTTCTCCGGCGTTGTCCGGGGCCGGTCCGACCGGGCCGGGTCCGTCAAGATGGGCTCCGACTCTGGTTCCGGTGGTTCCGGTGACTTTTCCGGCCCCGTCGTGCGCAAGAATCAGTTCCGAGGGGCGCTCTTCAAGTACGGCCCCAAACCAATTCAGGTTGCATTTAAAACAGGTGATTATAGACAGCAAGTCATCTTTATTGGTGGATTGACCGATGGCTTTCTGGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAACTACTCATGTCATCTTCATACAATGGATATGGCACTTCCAGCTTGAAACAAGACGCAATGGAACTTGATCAGCTGATTAGTTATTTTATAAACAAAGAAGATTCTGAGGGTGTTGTACTGATTGGCCATAGTACTGGCTGCCAGGACATTGTACATTATATACGCACAAATGCTGCATGCTCTAGAGCGGTTCGTGCTGCCATTCTACAGGCTCCAGTCAGTGATCGGGAATACAGAGCAACTCTTCCTGAAACAGCTGCTATGATTGACTTGGCTTCAACCATGATAAATGAAGGTCGCGGATCTCAATTAATGCCAAGTGAAGCAGATTTAGCCCCAATAACTGCCTATCGGTATCACTCACTTTGTGCATACAACGGGGATGATGACATGTTTAGTTCTGACCTTACTGATGACCAGCTGAGACTGAAACTTGGGCACATGACTAACACACCTTGCCAGGTTATTTATTCCATGGCTGATGAGTATGTGCCAGACTATGTTGACAAGAAAGCATTGGTTCAAAGATTGTGCAAAGCAATGGGTGGTGCAGAAAAGGTTGAAATTGAACATGGAAATCACTCCCTTTCTAACAGAGTTCATGAAGCTGTCGATGCGATGATTGATTTTGTTAAGAGAGACGGACCTAAAGGGTGGGATGATCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

341

Amino Acids

37.14

Weight (kDa)

5.31

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 61 - 325 1.4e-67 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
Acc16I TGCGCA 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 539
AccII CGCG 1 cut(s) 651
AciI CCGC 3 cut(s) 51, 539, 651
AclWI GGATC 2 cut(s) 661, 1007
AcoI YGGCCR 1 cut(s) 475
AdeI CACNNNGTG 1 cut(s) 719
AfaI GTAC 4 cut(s) 200, 468, 484, 504
AfiI CCNNNNNNNGG 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 7 cut(s) 196, 350, 397, 630, 875, 914, 920
AhdI GACNNNNNGTC 1 cut(s) 251
AjnI CCWGG 3 cut(s) 59, 492, 810
AluBI AGCT 5 cut(s) 393, 424, 608, 772, 959
AluI AGCT 5 cut(s) 393, 424, 608, 772, 959
Alw26I GTCTC 2 cut(s) 769, 984
AlwI GGATC 2 cut(s) 661, 1007
AoxI GGCC 5 cut(s) 82, 96, 154, 202, 475
ApeKI GCWGC 4 cut(s) 489, 524, 548, 608
AseI ATTAAT 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 2 cut(s) 168, 190
AspS9I GGNCC 7 cut(s) 82, 87, 96, 102, 155, 203, 995
AsuC2I CCSGG 3 cut(s) 80, 95, 100
AsuHPI GGTGA 2 cut(s) 155, 248
AvaII GGWCC 3 cut(s) 87, 102, 995
BaeGI GKGCMC 1 cut(s) 792
BalI TGGCCA 1 cut(s) 477
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 9, 27
BbvI GCAGC 4 cut(s) 476, 511, 535, 595
BccI CCATC 2 cut(s) 106, 272
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 3 cut(s) 61, 494, 812
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 3 cut(s) 80, 95, 100
BcoDI GTCTC 2 cut(s) 769, 984
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 4 cut(s) 490, 525, 549, 609
BlsI GCNGC 4 cut(s) 491, 526, 550, 610
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 6 cut(s) 61, 80, 95, 100, 494, 812
Bme18I GGWCC 3 cut(s) 87, 102, 995
BmeRI GACNNNNNGTC 1 cut(s) 251
BmgT120I GGNCC 7 cut(s) 82, 87, 96, 102, 155, 203, 995
BmrFI CCNGG 6 cut(s) 61, 80, 95, 100, 494, 812
BmsI GCATC 1 cut(s) 955
BpiI GAAGAC 2 cut(s) 9, 27
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 1 cut(s) 549
BpuMI CCSGG 3 cut(s) 80, 95, 100
BsaJI CCNNGG 4 cut(s) 79, 181, 825, 1016
BsaWI WCCGGW 2 cut(s) 131, 140
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 2 cut(s) 53, 84
Bse1I ACTGG 2 cut(s) 490, 566
Bse3DI GCAATG 2 cut(s) 414, 897
BseBI CCWGG 3 cut(s) 61, 494, 812
BseDI CCNNGG 4 cut(s) 79, 181, 825, 1016
BseGI GGATG 2 cut(s) 739, 1015
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMI GCAATG 2 cut(s) 414, 897
BseMII CTCAG 2 cut(s) 447, 764
BseNI ACTGG 2 cut(s) 490, 566
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 4 cut(s) 476, 511, 535, 595
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 5 cut(s) 84, 98, 156, 204, 477
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 132, 141, 153
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 769, 984
BsmBI CGTCTC 1 cut(s) 984
BsnI GGCC 5 cut(s) 84, 98, 156, 204, 477
Bsp1286I GDGCHC 2 cut(s) 119, 792
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 4 cut(s) 418, 574, 653, 1012
Bsp19I CCATGG 2 cut(s) 825, 1016
BspACI CCGC 3 cut(s) 51, 539, 651
BspANI GGCC 5 cut(s) 84, 98, 156, 204, 477
BspCNI CTCAG 2 cut(s) 448, 765
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 952
BspPI GGATC 2 cut(s) 661, 1007
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 539
BsrDI GCAATG 2 cut(s) 414, 897
BsrFI RCCGGY 2 cut(s) 53, 84
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 2 cut(s) 490, 566
BssAI RCCGGY 2 cut(s) 53, 84
BssECI CCNNGG 4 cut(s) 79, 181, 825, 1016
BssMI GATC 4 cut(s) 418, 574, 653, 1012
BssT1I CCWWGG 2 cut(s) 825, 1016
Bst2UI CCWGG 3 cut(s) 61, 494, 812
Bst6I CTCTTC 2 cut(s) 197, 600
BstAUI TGTACA 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 456, 773
BstDSI CCRYGG 2 cut(s) 825, 1016
BstF5I GGATG 2 cut(s) 739, 1015
BstFNI CGCG 1 cut(s) 651
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 168, 190
BstKTI GATC 4 cut(s) 421, 577, 656, 1015
BstMAI GTCTC 2 cut(s) 769, 984
BstMBI GATC 4 cut(s) 418, 574, 653, 1012
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 390, 545, 683, 965
BstNI CCWGG 3 cut(s) 61, 494, 812
BstNSI RCATGY 2 cut(s) 531, 745
BstSCI CCNGG 6 cut(s) 59, 78, 93, 98, 492, 810
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 792
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 4 cut(s) 476, 511, 535, 595
BstV2I GAAGAC 2 cut(s) 9, 27
BstX2I RGATCY 1 cut(s) 653
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 653
BsuRI GGCC 5 cut(s) 84, 98, 156, 204, 477
BtgI CCRYGG 2 cut(s) 825, 1016
BtgZI GCGATG 1 cut(s) 983
BtsCI GGATG 2 cut(s) 739, 1015
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 1 cut(s) 529
CciI TCATGA 1 cut(s) 952
CfoI GCGC 2 cut(s) 168, 190
Cfr10I RCCGGY 2 cut(s) 53, 84
Cfr13I GGNCC 7 cut(s) 82, 87, 96, 102, 155, 203, 995
CpoI CGGWCCG 1 cut(s) 87
CseI GACGC 1 cut(s) 413
Csp6I GTAC 4 cut(s) 199, 467, 483, 503
CspI CGGWCCG 1 cut(s) 87
CviAII CATG 9 cut(s) 358, 528, 634, 742, 793, 826, 923, 953, 1017
CviQI GTAC 4 cut(s) 199, 467, 483, 503
DdeI CTNAG 2 cut(s) 456, 773
DpnI GATC 4 cut(s) 420, 576, 655, 1014
DpnII GATC 4 cut(s) 418, 574, 653, 1012
DraI TTTAAA 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 719
DriI GACNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 197, 600
Eam1105I GACNNNNNGTC 1 cut(s) 251
EarI CTCTTC 2 cut(s) 197, 600
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 825, 1016
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 87, 102, 995
EcoRII CCWGG 3 cut(s) 59, 492, 810
EcoT14I CCWWGG 2 cut(s) 825, 1016
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 825, 1016
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 9 cut(s) 361, 531, 637, 745, 796, 829, 926, 956, 1020
FatI CATG 9 cut(s) 357, 527, 633, 741, 792, 825, 922, 952, 1016
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 490, 525, 549, 609
FokI GGATG 2 cut(s) 746, 1022
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 490, 525, 549, 609
FspBI CTAG 1 cut(s) 534
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 2 cut(s) 167, 189
GluI GCNGC 4 cut(s) 490, 525, 549, 609
GsuI CTGGAG 1 cut(s) 549
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 5 cut(s) 84, 98, 156, 204, 477
HapII CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 132, 141, 153
HgaI GACGC 1 cut(s) 413
HhaI GCGC 2 cut(s) 168, 190
Hin1II CATG 9 cut(s) 361, 531, 637, 745, 796, 829, 926, 956, 1020
Hin6I GCGC 2 cut(s) 166, 188
HinP1I GCGC 2 cut(s) 166, 188
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 4 cut(s) 4, 122, 172, 452
HpaII CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 132, 141, 153
HphI GGTGA 2 cut(s) 155, 248
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 5 cut(s) 91, 121, 182, 457, 754
Hpy188III TCNNGA 5 cut(s) 109, 534, 578, 599, 953
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 638
HpyCH4V TGCA 6 cut(s) 224, 314, 527, 722, 885, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 545, 683, 965
HpyF3I CTNAG 2 cut(s) 456, 773
Hsp92II CATG 9 cut(s) 361, 531, 637, 745, 796, 829, 926, 956, 1020
HspAI GCGC 2 cut(s) 166, 188
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 4 cut(s) 418, 574, 653, 1012
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 122, 568
Lsp1109I GCAGC 4 cut(s) 476, 511, 535, 595
LweI GCATC 1 cut(s) 955
MaeI CTAG 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 143, 339
MalI GATC 4 cut(s) 420, 576, 655, 1014
MbiI CCGCTC 1 cut(s) 539
MboI GATC 4 cut(s) 418, 574, 653, 1012
MboII GAAGA 8 cut(s) 9, 12, 15, 27, 184, 357, 461, 587
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 2 cut(s) 119, 792
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 5 cut(s) 213, 315, 659, 915, 1021
MluNI TGGCCA 1 cut(s) 477
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 114, 144
MnlI CCTC 5 cut(s) 19, 39, 176, 318, 451
Mox20I TGGCCA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 477
MseI TTAA 3 cut(s) 228, 662, 984
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 3 cut(s) 424, 608, 772
MspI CCGG 9 cut(s) 54, 69, 79, 85, 94, 99, 132, 141, 153
MspR9I CCNGG 6 cut(s) 61, 80, 95, 100, 494, 812
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 3 cut(s) 61, 494, 812
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 4 cut(s) 390, 545, 683, 965
NciI CCSGG 3 cut(s) 80, 95, 100
NcoI CCATGG 2 cut(s) 825, 1016
NdeII GATC 4 cut(s) 418, 574, 653, 1012
NlaIII CATG 9 cut(s) 361, 531, 637, 745, 796, 829, 926, 956, 1020
NmuCI GTSAC 2 cut(s) 143, 339
NsbI TGCGCA 1 cut(s) 167
NspI RCATGY 2 cut(s) 531, 745
PaeI GCATGC 1 cut(s) 531
PagI TCATGA 1 cut(s) 952
PciI ACATGT 1 cut(s) 741
PciSI GCTCTTC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 4, 172, 452
PkrI GCNGC 4 cut(s) 491, 526, 550, 610
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 741
PshBI ATTAAT 1 cut(s) 662
PsiI TTATAA 1 cut(s) 440
Psp6I CCWGG 3 cut(s) 59, 492, 810
PspGI CCWGG 3 cut(s) 59, 492, 810
PspPI GGNCC 7 cut(s) 82, 87, 96, 102, 155, 203, 995
PsuI RGATCY 1 cut(s) 653
PvuII CAGCTG 3 cut(s) 424, 608, 772
RsaI GTAC 4 cut(s) 200, 468, 484, 504
RsaNI GTAC 4 cut(s) 199, 467, 483, 503
Rsr2I CGGWCCG 1 cut(s) 87
RsrII CGGWCCG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 3 cut(s) 228, 662, 984
SatI GCNGC 4 cut(s) 490, 525, 549, 609
Sau3AI GATC 4 cut(s) 418, 574, 653, 1012
Sau96I GGNCC 7 cut(s) 82, 87, 96, 102, 155, 203, 995
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 6 cut(s) 61, 80, 95, 100, 494, 812
SduI GDGCHC 2 cut(s) 119, 792
SfaNI GCATC 1 cut(s) 955
SfcI CTRYAG 1 cut(s) 557
SinI GGWCC 3 cut(s) 87, 102, 995
SphI GCATGC 1 cut(s) 531
Sse9I AATT 5 cut(s) 213, 315, 659, 915, 1021
SsiI CCGC 3 cut(s) 51, 539, 651
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 6 cut(s) 59, 78, 93, 98, 492, 810
StyI CCWWGG 2 cut(s) 825, 1016
TaqI TCGA 1 cut(s) 963
TaqII GACCGA 1 cut(s) 290
TasI AATT 5 cut(s) 213, 315, 659, 915, 1021
TatI WGTACW 3 cut(s) 466, 482, 502
TfiI GAWTC 3 cut(s) 4, 172, 452
Tru1I TTAA 3 cut(s) 228, 662, 984
Tru9I TTAA 3 cut(s) 228, 662, 984
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 2 cut(s) 143, 339
TseI GCWGC 4 cut(s) 489, 524, 548, 608
Tsp45I GTSAC 2 cut(s) 143, 339
TspDTI ATGAA 5 cut(s) 17, 357, 657, 941, 969
TspGWI ACGGA 3 cut(s) 21, 94, 1008
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 87, 102, 995
VspI ATTAAT 1 cut(s) 662
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 2 cut(s) 531, 745
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 534
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.