Rw4G018190

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008083
Physical Location & Seq
Reverse (-)
40411980 .. 40415387
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018190.1

Sequence Viewer

Length: 1032 bp
ATGAATCCCTCGCTGTCTTCTTCTTCTTCTTCTCCTCCGTCTTCTACTTCGGCTTCCGCCGGTTCCTGGTTCTCCGGCGTTGTCCGGGGCCGGTCCGACCGGGCCGGGTCCGTCAAGATGGGCTCCGACTCTGGCTCCGGTGGTTCCGGTGACTTTTCCGGCCCCGTCGTGCGCAAGAATCAGTTCCGAGGGGCGCTCTTCAAGTACGGCCCCAAACCAATTCAGGTTGCATTTAAAACAGGTGATTATAGACAGCAAGTCATCTTTATTGGTGGATTGACCGATGGCTTTCTGGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAACTACTCATGTCATCTTCATACAATGGATATGGCACTTCCAGCTTGAAACAAGACGCGATGGAACTTGATCAGCTGATTAGTTATTTTATAAACAAAGAAGATTCTGAGGGTGTTGTACTGATTGGCCATAGTACTGGCTGCCAGGACATTGTACATTATATACGCACAAATGCTGCATGCTCTAGAGCGGTTCGTGCTGCCATTCTACAGGCTCCAGTCAGTGATCGGGAATACAGAGCAACTCTTCCTGAAACAGCTACTATGATTGACTTGGCTTCAACCATGATAAATGAAGGTCGCGGATCTCAATTAATGCCAAGTGAAGCAGATTTAGCCCCAATAACTGCCTATCGGTATCACTCACTTTGTGCATACAACGGGGATGATGACATGTTTAGTTCTGACCTTACTGATGACCAGCTGAGACTGAAACTTGGGCACATGACTAACACACCTTGCCAGGTTATTTATTCCATGGCTGATGAGTATGTGCCAGACTATGTTGACAAGAAAGCATTGGTTCAAAGATTGTGCAAAGCAATGGGTGGTGCAGAAAAGGTTGAAATTGAACATGGAAATCACTCCCTTTCTAACAGAGTTCATGAAGCTGTCGATGCGATGATTGATTTTGTTAAGAGAGACGGACCTAAAGGGTGGGATGATCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

343

Amino Acids

37.35

Weight (kDa)

5.31

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 63 - 327 1.3e-67 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
Acc16I TGCGCA 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 545
AccII CGCG 2 cut(s) 413, 657
AciI CCGC 3 cut(s) 57, 545, 657
AclWI GGATC 2 cut(s) 667, 1013
AcoI YGGCCR 1 cut(s) 481
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 4 cut(s) 206, 474, 490, 510
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 7 cut(s) 202, 356, 403, 636, 881, 920, 926
AhdI GACNNNNNGTC 1 cut(s) 257
AjnI CCWGG 3 cut(s) 65, 498, 816
AluBI AGCT 5 cut(s) 399, 430, 614, 778, 965
AluI AGCT 5 cut(s) 399, 430, 614, 778, 965
Alw26I GTCTC 2 cut(s) 775, 990
AlwI GGATC 2 cut(s) 667, 1013
AoxI GGCC 5 cut(s) 88, 102, 160, 208, 481
ApeKI GCWGC 3 cut(s) 495, 530, 554
AseI ATTAAT 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 2 cut(s) 174, 196
AspS9I GGNCC 7 cut(s) 88, 93, 102, 108, 161, 209, 1001
AsuC2I CCSGG 3 cut(s) 86, 101, 106
AsuHPI GGTGA 2 cut(s) 161, 254
AvaII GGWCC 3 cut(s) 93, 108, 1001
BaeGI GKGCMC 1 cut(s) 798
BalI TGGCCA 1 cut(s) 483
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 9, 33
BbvI GCAGC 3 cut(s) 482, 517, 541
BccI CCATC 3 cut(s) 112, 278, 409
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 3 cut(s) 67, 500, 818
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 3 cut(s) 86, 101, 106
BcoDI GTCTC 2 cut(s) 775, 990
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 563
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 3 cut(s) 496, 531, 555
BlsI GCNGC 3 cut(s) 497, 532, 556
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 6 cut(s) 67, 86, 101, 106, 500, 818
Bme18I GGWCC 3 cut(s) 93, 108, 1001
BmeRI GACNNNNNGTC 1 cut(s) 257
BmgT120I GGNCC 7 cut(s) 88, 93, 102, 108, 161, 209, 1001
BmrFI CCNGG 6 cut(s) 67, 86, 101, 106, 500, 818
BmsI GCATC 1 cut(s) 961
BpiI GAAGAC 2 cut(s) 9, 33
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 555
BpuMI CCSGG 3 cut(s) 86, 101, 106
BsaJI CCNNGG 4 cut(s) 85, 187, 831, 1022
BsaWI WCCGGW 2 cut(s) 137, 146
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 2 cut(s) 59, 90
Bse1I ACTGG 2 cut(s) 496, 572
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 3 cut(s) 67, 500, 818
BseDI CCNNGG 4 cut(s) 85, 187, 831, 1022
BseGI GGATG 2 cut(s) 745, 1021
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 2 cut(s) 453, 770
BseNI ACTGG 2 cut(s) 496, 572
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 798
BseXI GCAGC 3 cut(s) 482, 517, 541
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 2 cut(s) 413, 657
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 90, 104, 162, 210, 483
BsiEI CGRYCG 1 cut(s) 100
BsiSI CCGG 9 cut(s) 60, 75, 85, 91, 100, 105, 138, 147, 159
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 775, 990
BsmBI CGTCTC 1 cut(s) 990
BsnI GGCC 5 cut(s) 90, 104, 162, 210, 483
Bsp1286I GDGCHC 2 cut(s) 125, 798
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 424, 580, 659, 1018
Bsp19I CCATGG 2 cut(s) 831, 1022
BspACI CCGC 3 cut(s) 57, 545, 657
BspANI GGCC 5 cut(s) 90, 104, 162, 210, 483
BspCNI CTCAG 2 cut(s) 454, 771
BspFNI CGCG 2 cut(s) 413, 657
BspHI TCATGA 1 cut(s) 958
BspPI GGATC 2 cut(s) 667, 1013
BspQI GCTCTTC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 2 cut(s) 59, 90
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 496, 572
BssAI RCCGGY 2 cut(s) 59, 90
BssECI CCNNGG 4 cut(s) 85, 187, 831, 1022
BssMI GATC 4 cut(s) 424, 580, 659, 1018
BssT1I CCWWGG 2 cut(s) 831, 1022
Bst2UI CCWGG 3 cut(s) 67, 500, 818
Bst6I CTCTTC 2 cut(s) 203, 606
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 2 cut(s) 462, 779
BstDSI CCRYGG 2 cut(s) 831, 1022
BstF5I GGATG 2 cut(s) 745, 1021
BstFNI CGCG 2 cut(s) 413, 657
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 2 cut(s) 174, 196
BstKTI GATC 4 cut(s) 427, 583, 662, 1021
BstMAI GTCTC 2 cut(s) 775, 990
BstMBI GATC 4 cut(s) 424, 580, 659, 1018
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 396, 551, 689, 971
BstNI CCWGG 3 cut(s) 67, 500, 818
BstNSI RCATGY 2 cut(s) 537, 751
BstSCI CCNGG 6 cut(s) 65, 84, 99, 104, 498, 816
BstSFI CTRYAG 1 cut(s) 563
BstSLI GKGCMC 1 cut(s) 798
BstUI CGCG 2 cut(s) 413, 657
BstV1I GCAGC 3 cut(s) 482, 517, 541
BstV2I GAAGAC 2 cut(s) 9, 33
BstX2I RGATCY 1 cut(s) 659
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 1 cut(s) 659
BsuRI GGCC 5 cut(s) 90, 104, 162, 210, 483
BtgI CCRYGG 2 cut(s) 831, 1022
BtgZI GCGATG 2 cut(s) 428, 989
BtsCI GGATG 2 cut(s) 745, 1021
BtsIMutI CAGTG 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 174, 196
Cfr10I RCCGGY 2 cut(s) 59, 90
Cfr13I GGNCC 7 cut(s) 88, 93, 102, 108, 161, 209, 1001
CpoI CGGWCCG 1 cut(s) 93
CseI GACGC 1 cut(s) 419
Csp6I GTAC 4 cut(s) 205, 473, 489, 509
CspI CGGWCCG 1 cut(s) 93
CviAII CATG 9 cut(s) 364, 534, 640, 748, 799, 832, 929, 959, 1023
CviQI GTAC 4 cut(s) 205, 473, 489, 509
DdeI CTNAG 2 cut(s) 462, 779
DpnI GATC 4 cut(s) 426, 582, 661, 1020
DpnII GATC 4 cut(s) 424, 580, 659, 1018
DraI TTTAAA 1 cut(s) 235
DraIII CACNNNGTG 1 cut(s) 725
DriI GACNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 203, 606
Eam1105I GACNNNNNGTC 1 cut(s) 257
EarI CTCTTC 2 cut(s) 203, 606
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 831, 1022
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 3 cut(s) 93, 108, 1001
EcoRII CCWGG 3 cut(s) 65, 498, 816
EcoT14I CCWWGG 2 cut(s) 831, 1022
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 2 cut(s) 831, 1022
Esp3I CGTCTC 1 cut(s) 990
FaeI CATG 9 cut(s) 367, 537, 643, 751, 802, 835, 932, 962, 1026
FatI CATG 9 cut(s) 363, 533, 639, 747, 798, 831, 928, 958, 1022
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 496, 531, 555
FokI GGATG 2 cut(s) 752, 1028
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 496, 531, 555
FspBI CTAG 1 cut(s) 540
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 2 cut(s) 173, 195
GluI GCNGC 3 cut(s) 496, 531, 555
GsuI CTGGAG 1 cut(s) 555
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 5 cut(s) 90, 104, 162, 210, 483
HapII CCGG 9 cut(s) 60, 75, 85, 91, 100, 105, 138, 147, 159
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 174, 196
Hin1II CATG 9 cut(s) 367, 537, 643, 751, 802, 835, 932, 962, 1026
Hin6I GCGC 2 cut(s) 172, 194
HinP1I GCGC 2 cut(s) 172, 194
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 4 cut(s) 4, 128, 178, 458
HpaII CCGG 9 cut(s) 60, 75, 85, 91, 100, 105, 138, 147, 159
HphI GGTGA 2 cut(s) 161, 254
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 5 cut(s) 97, 127, 188, 463, 760
Hpy188III TCNNGA 5 cut(s) 115, 540, 584, 605, 959
Hpy8I GTNNAC 1 cut(s) 862
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 644
HpyCH4V TGCA 6 cut(s) 230, 320, 533, 728, 891, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 396, 551, 689, 971
HpyF3I CTNAG 2 cut(s) 462, 779
Hsp92II CATG 9 cut(s) 367, 537, 643, 751, 802, 835, 932, 962, 1026
HspAI GCGC 2 cut(s) 172, 194
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 424, 580, 659, 1018
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 128, 140, 574
Lsp1109I GCAGC 3 cut(s) 482, 517, 541
LweI GCATC 1 cut(s) 961
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 149, 345
MalI GATC 4 cut(s) 426, 582, 661, 1020
MbiI CCGCTC 1 cut(s) 545
MboI GATC 4 cut(s) 424, 580, 659, 1018
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 2 cut(s) 125, 798
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 5 cut(s) 219, 321, 665, 921, 1027
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 120, 150
MnlI CCTC 5 cut(s) 19, 45, 182, 324, 457
Mox20I TGGCCA 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 182
MscI TGGCCA 1 cut(s) 483
MseI TTAA 3 cut(s) 234, 668, 990
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 2 cut(s) 430, 778
MspI CCGG 9 cut(s) 60, 75, 85, 91, 100, 105, 138, 147, 159
MspR9I CCNGG 6 cut(s) 67, 86, 101, 106, 500, 818
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 3 cut(s) 67, 500, 818
MvnI CGCG 2 cut(s) 413, 657
MwoI GCNNNNNNNGC 4 cut(s) 396, 551, 689, 971
NciI CCSGG 3 cut(s) 86, 101, 106
NcoI CCATGG 2 cut(s) 831, 1022
NdeII GATC 4 cut(s) 424, 580, 659, 1018
NlaIII CATG 9 cut(s) 367, 537, 643, 751, 802, 835, 932, 962, 1026
NmuCI GTSAC 2 cut(s) 149, 345
NsbI TGCGCA 1 cut(s) 173
NspI RCATGY 2 cut(s) 537, 751
PaeI GCATGC 1 cut(s) 537
PagI TCATGA 1 cut(s) 958
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 4, 178, 458
PkrI GCNGC 3 cut(s) 497, 532, 556
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 747
PshBI ATTAAT 1 cut(s) 668
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 3 cut(s) 65, 498, 816
PspGI CCWGG 3 cut(s) 65, 498, 816
PspPI GGNCC 7 cut(s) 88, 93, 102, 108, 161, 209, 1001
PsuI RGATCY 1 cut(s) 659
PvuII CAGCTG 2 cut(s) 430, 778
RsaI GTAC 4 cut(s) 206, 474, 490, 510
RsaNI GTAC 4 cut(s) 205, 473, 489, 509
Rsr2I CGGWCCG 1 cut(s) 93
RsrII CGGWCCG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 234, 668, 990
SatI GCNGC 3 cut(s) 496, 531, 555
Sau3AI GATC 4 cut(s) 424, 580, 659, 1018
Sau96I GGNCC 7 cut(s) 88, 93, 102, 108, 161, 209, 1001
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 6 cut(s) 67, 86, 101, 106, 500, 818
SduI GDGCHC 2 cut(s) 125, 798
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 1 cut(s) 563
SinI GGWCC 3 cut(s) 93, 108, 1001
SphI GCATGC 1 cut(s) 537
Sse9I AATT 5 cut(s) 219, 321, 665, 921, 1027
SsiI CCGC 3 cut(s) 57, 545, 657
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 6 cut(s) 65, 84, 99, 104, 498, 816
StyI CCWWGG 2 cut(s) 831, 1022
TaqI TCGA 1 cut(s) 969
TaqII GACCGA 1 cut(s) 296
TasI AATT 5 cut(s) 219, 321, 665, 921, 1027
TatI WGTACW 3 cut(s) 472, 488, 508
TfiI GAWTC 3 cut(s) 4, 178, 458
Tru1I TTAA 3 cut(s) 234, 668, 990
Tru9I TTAA 3 cut(s) 234, 668, 990
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 2 cut(s) 149, 345
TseI GCWGC 3 cut(s) 495, 530, 554
Tsp45I GTSAC 2 cut(s) 149, 345
TspDTI ATGAA 5 cut(s) 17, 363, 663, 947, 975
TspGWI ACGGA 3 cut(s) 27, 100, 1014
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 3 cut(s) 93, 108, 1001
VspI ATTAAT 1 cut(s) 668
XbaI TCTAGA 1 cut(s) 539
XceI RCATGY 2 cut(s) 537, 751
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 540
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.