FvH4_4g14470

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008083
Physical Location & Seq
Forward (+)
18149535 .. 18153288
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14470.t4

Sequence Viewer

Length: 1020 bp
ATGAATCCCTCGCTGTCTTCTTCGTCTTCCCCGACTTCTTCGCATTCAACTTCCGCCGGTTCCTGGTTCTCCGGCGTCGTCCGCGGACGGTCCGACCGGGCCGGGTCCGTCAAGATGGGATCGGACTCTGCTTCCGGTGAGTTTTCCGGCCCGGTTGTGCGGAAGAATCAGTTTCGAGGGGCGCTGTTCAAGTACGGCCCCAAACCGATTCAGGTTGCATTTAAAACAGGTGATTATAGACAGCAAGTCATCTTTATTGGGGGACTGACTGATGGCTTTCTAGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAACTACTCATGTCATCCTCATACAATGGATATGGCACTTCCAGCTTGAAACAAGACGCGATGGAACTTGATCAACTGATTAGTTATTTTATAAACAAAGAAGATTCTGAGGGTGTTGTACTGATTGGCCATAGTACTGGCTGCCAGGACATTGTACATTATATACGTACAAATGCCGCATGCTCTAGAGCTGTTCGTGCTGCCATTCTACAGGCTCCAGTCAGCGATCGAGAATACAGAGCAACACTTCCTGAAACAGCTGCTATGATTGATTTGGCTTCAACCATGATAAATGAAGGCCGTGGATCTGAATTAATGCCAAGTGAAGCAGATCTAGCTCCCATAACTGCCTATCGGTATCACTCACTTTGTGCATACAACGGGGATGATGACATGTTTAGTTCCGACCTTACTGATGACCAGCTGAGATTGAGACTTGGACACATGTCTAACACACCTTGCCAAGTTATATATTCCATGGCTGATGAGTATGTGCCAGACTATGTTGACAAGAAGGCATTAGTTCAAAGATTGTGCAAAGCAATGAGTGGGGCAGAGAAAGTTGAAATTGAACATGGAAATCACTCCCTTTCTAACAGAGTTCAAGAAGTTGTTGCAGCTATAATTGATTTTGTTAAGAGAGACGGGCCTAAAGGGTGGGATGATCCTTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

340

Amino Acids

37.13

Weight (kDa)

5.32

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 59 - 132 1.5e-18 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccII CGCG 2 cut(s) 84, 401
AciI CCGC 5 cut(s) 54, 82, 84, 160, 519
AclWI GGATC 3 cut(s) 127, 655, 1001
AcoI YGGCCR 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 713
AfaI GTAC 5 cut(s) 194, 462, 478, 498, 511
AfiI CCNNNNNNNGG 1 cut(s) 63
AflIII ACRYGT 2 cut(s) 735, 786
AgsI TTSAA 9 cut(s) 48, 190, 344, 391, 624, 869, 908, 914, 947
AhdI GACNNNNNGTC 1 cut(s) 245
AjnI CCWGG 2 cut(s) 62, 486
AluBI AGCT 6 cut(s) 387, 533, 602, 680, 766, 962
AluI AGCT 6 cut(s) 387, 533, 602, 680, 766, 962
Alw26I GTCTC 2 cut(s) 769, 978
AlwI GGATC 3 cut(s) 127, 655, 1001
AoxI GGCC 6 cut(s) 99, 148, 196, 469, 640, 989
ApeKI GCWGC 4 cut(s) 483, 542, 602, 959
AseI ATTAAT 1 cut(s) 656
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 6 cut(s) 90, 99, 105, 149, 197, 989
AsuC2I CCSGG 3 cut(s) 98, 103, 152
AsuHPI GGTGA 2 cut(s) 149, 242
AvaII GGWCC 2 cut(s) 90, 105
BalI TGGCCA 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 9, 18
BbvI GCAGC 4 cut(s) 470, 529, 589, 971
BccI CCATC 3 cut(s) 109, 266, 397
BceAI ACGGC 2 cut(s) 211, 627
BciT130I CCWGG 2 cut(s) 64, 488
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 3 cut(s) 98, 103, 152
BcoDI GTCTC 2 cut(s) 769, 978
BfaI CTAG 3 cut(s) 281, 528, 677
BfmI CTRYAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 185
BglII AGATCT 1 cut(s) 673
BisI GCNGC 5 cut(s) 484, 519, 543, 603, 960
BlsI GCNGC 5 cut(s) 485, 520, 544, 604, 961
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 5 cut(s) 64, 98, 103, 152, 488
Bme18I GGWCC 2 cut(s) 90, 105
BmeRI GACNNNNNGTC 1 cut(s) 245
BmgT120I GGNCC 6 cut(s) 90, 99, 105, 149, 197, 989
BmiI GGNNCC 5 cut(s) 61, 106, 199, 300, 558
BmrFI CCNGG 5 cut(s) 64, 98, 103, 152, 488
BoxI GACNNNNGTC 1 cut(s) 787
BpiI GAAGAC 2 cut(s) 9, 18
BpmI CTGGAG 1 cut(s) 543
BpuMI CCSGG 3 cut(s) 98, 103, 152
BsaAI YACGTR 1 cut(s) 509
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 82, 643, 819, 1010
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 484, 560
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 2 cut(s) 64, 488
BseDI CCNNGG 4 cut(s) 82, 643, 819, 1010
BseGI GGATG 3 cut(s) 356, 733, 1009
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 2 cut(s) 441, 758
BseNI ACTGG 2 cut(s) 484, 560
BseXI GCAGC 4 cut(s) 470, 529, 589, 971
Bsh1236I CGCG 2 cut(s) 84, 401
Bsh1285I CGRYCG 2 cut(s) 97, 571
BshFI GGCC 6 cut(s) 101, 150, 198, 471, 642, 991
BsiEI CGRYCG 2 cut(s) 97, 571
BsiSI CCGG 7 cut(s) 57, 72, 97, 102, 135, 147, 152
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 769, 978
BsmBI CGTCTC 1 cut(s) 978
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 6 cut(s) 101, 150, 198, 471, 642, 991
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 5 cut(s) 54, 82, 84, 160, 519
BspANI GGCC 6 cut(s) 101, 150, 198, 471, 642, 991
BspCNI CTCAG 2 cut(s) 442, 759
BspFNI CGCG 2 cut(s) 84, 401
BspLI GGNNCC 5 cut(s) 61, 106, 199, 300, 558
BspPI GGATC 3 cut(s) 127, 655, 1001
BsrDI GCAATG 1 cut(s) 891
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 2 cut(s) 484, 560
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 82, 643, 819, 1010
BssMI GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 819, 1010
Bst2UI CCWGG 2 cut(s) 64, 488
Bst4CI ACNGT 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 496
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 450, 767
BstDSI CCRYGG 3 cut(s) 82, 643, 819
BstF5I GGATG 3 cut(s) 356, 733, 1009
BstFNI CGCG 2 cut(s) 84, 401
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 6 cut(s) 122, 415, 571, 650, 676, 1009
BstMAI GTCTC 2 cut(s) 769, 978
BstMBI GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
BstMCI CGRYCG 2 cut(s) 97, 571
BstMWI GCNNNNNNNGC 4 cut(s) 81, 384, 539, 677
BstNI CCWGG 2 cut(s) 64, 488
BstNSI RCATGY 3 cut(s) 525, 739, 790
BstPAI GACNNNNGTC 1 cut(s) 787
BstSCI CCNGG 5 cut(s) 62, 96, 101, 150, 486
BstSFI CTRYAG 1 cut(s) 551
BstSNI TACGTA 1 cut(s) 509
BstUI CGCG 2 cut(s) 84, 401
BstV1I GCAGC 4 cut(s) 470, 529, 589, 971
BstV2I GAAGAC 2 cut(s) 9, 18
BstX2I RGATCY 2 cut(s) 647, 673
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 647, 673
BsuRI GGCC 6 cut(s) 101, 150, 198, 471, 642, 991
BtgI CCRYGG 3 cut(s) 82, 643, 819
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 3 cut(s) 356, 733, 1009
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 6 cut(s) 90, 99, 105, 149, 197, 989
Cfr42I CCGCGG 1 cut(s) 85
CpoI CGGWCCG 1 cut(s) 90
CseI GACGC 2 cut(s) 64, 407
Csp6I GTAC 5 cut(s) 193, 461, 477, 497, 510
CspI CGGWCCG 1 cut(s) 90
CviAII CATG 7 cut(s) 352, 522, 628, 736, 787, 820, 917
CviQI GTAC 5 cut(s) 193, 461, 477, 497, 510
DdeI CTNAG 2 cut(s) 450, 767
DpnI GATC 6 cut(s) 121, 414, 570, 649, 675, 1008
DpnII GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
DraI TTTAAA 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 713
DriI GACNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 469
Eam1105I GACNNNNNGTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 43
Eco105I TACGTA 1 cut(s) 509
Eco130I CCWWGG 2 cut(s) 819, 1010
Eco47I GGWCC 2 cut(s) 90, 105
EcoRII CCWGG 2 cut(s) 62, 486
EcoT14I CCWWGG 2 cut(s) 819, 1010
ErhI CCWWGG 2 cut(s) 819, 1010
Esp3I CGTCTC 1 cut(s) 978
FaeI CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
FaqI GGGAC 1 cut(s) 276
FatI CATG 7 cut(s) 351, 521, 627, 735, 786, 819, 916
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 5 cut(s) 484, 519, 543, 603, 960
FokI GGATG 3 cut(s) 343, 740, 1016
Fsp4HI GCNGC 5 cut(s) 484, 519, 543, 603, 960
FspBI CTAG 3 cut(s) 281, 528, 677
GlaI GCGC 1 cut(s) 183
GluI GCNGC 5 cut(s) 484, 519, 543, 603, 960
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 6 cut(s) 101, 150, 198, 471, 642, 991
HapII CCGG 7 cut(s) 57, 72, 97, 102, 135, 147, 152
HgaI GACGC 2 cut(s) 64, 407
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 5 cut(s) 4, 125, 166, 208, 446
HpaII CCGG 7 cut(s) 57, 72, 97, 102, 135, 147, 152
HphI GGTGA 2 cut(s) 149, 242
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 5 cut(s) 94, 124, 451, 652, 748
Hpy188III TCNNGA 5 cut(s) 112, 528, 572, 593, 947
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 632, 850
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 5 cut(s) 218, 308, 716, 879, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 384, 539, 677
HpyF3I CTNAG 2 cut(s) 450, 767
HpySE526I ACGT 1 cut(s) 508
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
HspAI GCGC 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 412
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
LmnI GCTCC 2 cut(s) 562, 685
Lsp1109I GCAGC 4 cut(s) 470, 529, 589, 971
MaeI CTAG 3 cut(s) 281, 528, 677
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 333
MalI GATC 6 cut(s) 121, 414, 570, 649, 675, 1008
MboI GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
MboII GAAGA 6 cut(s) 9, 12, 18, 30, 175, 455
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 647, 673
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 5 cut(s) 309, 653, 909, 966, 1015
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 117, 771
MnlI CCTC 5 cut(s) 19, 170, 312, 370, 445
Mox20I TGGCCA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 471
MseI TTAA 3 cut(s) 222, 656, 978
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 3 cut(s) 84, 602, 766
MspI CCGG 7 cut(s) 57, 72, 97, 102, 135, 147, 152
MspR9I CCNGG 5 cut(s) 64, 98, 103, 152, 488
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 2 cut(s) 64, 488
MvnI CGCG 2 cut(s) 84, 401
MwoI GCNNNNNNNGC 4 cut(s) 81, 384, 539, 677
NciI CCSGG 3 cut(s) 98, 103, 152
NcoI CCATGG 1 cut(s) 819
NdeII GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
NlaIII CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
NlaIV GGNNCC 5 cut(s) 61, 106, 199, 300, 558
NmuCI GTSAC 1 cut(s) 333
NspI RCATGY 3 cut(s) 525, 739, 790
PaeI GCATGC 1 cut(s) 525
PciI ACATGT 2 cut(s) 735, 786
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 4 cut(s) 4, 166, 208, 446
PkrI GCNGC 5 cut(s) 485, 520, 544, 604, 961
Ple19I CGATCG 1 cut(s) 571
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 509
PscI ACATGT 2 cut(s) 735, 786
PshAI GACNNNNGTC 1 cut(s) 787
PshBI ATTAAT 1 cut(s) 656
PsiI TTATAA 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 62, 486
PspGI CCWGG 2 cut(s) 62, 486
PspN4I GGNNCC 5 cut(s) 61, 106, 199, 300, 558
PspPI GGNCC 6 cut(s) 90, 99, 105, 149, 197, 989
PsuI RGATCY 2 cut(s) 647, 673
PvuI CGATCG 1 cut(s) 571
PvuII CAGCTG 2 cut(s) 602, 766
RsaI GTAC 5 cut(s) 194, 462, 478, 498, 511
RsaNI GTAC 5 cut(s) 193, 461, 477, 497, 510
Rsr2I CGGWCCG 1 cut(s) 90
RsrII CGGWCCG 1 cut(s) 90
SacII CCGCGG 1 cut(s) 85
SaqAI TTAA 3 cut(s) 222, 656, 978
SatI GCNGC 5 cut(s) 484, 519, 543, 603, 960
Sau3AI GATC 6 cut(s) 119, 412, 568, 647, 673, 1006
Sau96I GGNCC 6 cut(s) 90, 99, 105, 149, 197, 989
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 5 cut(s) 64, 98, 103, 152, 488
SfcI CTRYAG 1 cut(s) 551
Sfr303I CCGCGG 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 2 cut(s) 90, 105
SnaBI TACGTA 1 cut(s) 509
SphI GCATGC 1 cut(s) 525
Sse9I AATT 5 cut(s) 309, 653, 909, 966, 1015
SsiI CCGC 5 cut(s) 54, 82, 84, 160, 519
SspMI CTAG 3 cut(s) 281, 528, 677
StyD4I CCNGG 5 cut(s) 62, 96, 101, 150, 486
StyI CCWWGG 2 cut(s) 819, 1010
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 511
TaqI TCGA 2 cut(s) 175, 571
TasI AATT 5 cut(s) 309, 653, 909, 966, 1015
TatI WGTACW 3 cut(s) 460, 476, 496
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 4 cut(s) 4, 166, 208, 446
Tru1I TTAA 3 cut(s) 222, 656, 978
Tru9I TTAA 3 cut(s) 222, 656, 978
TseFI GTSAC 1 cut(s) 333
TseI GCWGC 4 cut(s) 483, 542, 602, 959
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 17, 651
TspGWI ACGGA 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 90, 105
VspI ATTAAT 1 cut(s) 656
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 3 cut(s) 525, 739, 790
XspI CTAG 3 cut(s) 281, 528, 677
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.