RLG00000007871

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008083
Physical Location & Seq
Forward (+)
22262303 .. 22268123
5821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007871

Sequence Viewer

Length: 948 bp
ATGAATCCCTCGCTGTCTTCTTCTTCTTCTCCTCCGTCTTCTACTTCGGCTTCCGCCGGTTCCTGGTTCTCCGGCGTTGTCCGGGGCCGGTCCGACCGGGCCGGGTCCGTCAAGATGGGCTCCGACTCTGGTTCCGGTGACTTTTCCGGCCCCGTCGTGCGGAAGAATCAGTTCCGAGGGGCGCTCTTCAAGTACGGCCCCAAACCAATTCAGGTTGCATTTAAAACAGGTGATTATAGACAGCAAGTCATCTTTATTGGTGGATTGACCGATGGCTTTCTGGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAACTACTCATGTCATCTTCATACAATGGATATGGCACTTCCAGCTTGAAACAAGACGCGATGGAACTTGATCAGCTGATTAGTTATTTTATAAACAAAGAAGATTCTGAGGGTGTTGTACTGATTGGCCATAGTACTGGCTGCCAGGACATTGTACATTATATACGCACAAATGCTGCATGCTCTAGAGCGGTTCGTGCTGCCATTCTACAGGCTCCAGTCAGTGATCGGGAATACAGAGCAACTCTTCCTGAAACAGCTGCTATGATTGACTTGGCTTCAACCATGATAAATGAAGGTCGCGGATCTCAATTAATGCCAAGTGAAGCAGATTTAGCCCCAATAACTGCCTATCGGTATCACTCACTTTGTGCGTACAACGGGGATGATGACATGTTTAGTTCTGACCTTACTGATGACCAGCTGAGATTGAAACTTGGGCACATGACTAACACACCTTGCCAGGTTATTTATTCCATGGCTGATGAGTATGTGCCAGACTATGTTGACAAGAAAGCATTGGTTCAAAGATTGTGCAAAGCAATGGGTGGTGCAGAAAAGGGTGGGATGATCCATGGAATTAGTGTGGCATATCTGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

316

Amino Acids

34.13

Weight (kDa)

5.61

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 59 - 307 1.3e-67 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 533
AccII CGCG 2 cut(s) 401, 645
AciI CCGC 4 cut(s) 54, 160, 533, 645
AclWI GGATC 2 cut(s) 655, 907
AcoI YGGCCR 1 cut(s) 469
AdeI CACNNNGTG 1 cut(s) 713
AfaI GTAC 5 cut(s) 194, 462, 478, 498, 719
AfiI CCNNNNNNNGG 2 cut(s) 63, 159
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 6 cut(s) 190, 344, 391, 624, 775, 869
AhdI GACNNNNNGTC 1 cut(s) 245
AjnI CCWGG 3 cut(s) 62, 486, 804
AluBI AGCT 4 cut(s) 387, 418, 602, 766
AluI AGCT 4 cut(s) 387, 418, 602, 766
AlwI GGATC 2 cut(s) 655, 907
AoxI GGCC 5 cut(s) 85, 99, 148, 196, 469
ApeKI GCWGC 4 cut(s) 483, 518, 542, 602
AseI ATTAAT 1 cut(s) 656
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 6 cut(s) 85, 90, 99, 105, 149, 197
AsuC2I CCSGG 3 cut(s) 83, 98, 103
AsuHPI GGTGA 2 cut(s) 149, 242
AvaII GGWCC 2 cut(s) 90, 105
BaeGI GKGCMC 1 cut(s) 786
BalI TGGCCA 1 cut(s) 471
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 9, 30
BbvI GCAGC 4 cut(s) 470, 505, 529, 589
BccI CCATC 3 cut(s) 109, 266, 397
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 3 cut(s) 64, 488, 806
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 3 cut(s) 83, 98, 103
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 4 cut(s) 484, 519, 543, 603
BlsI GCNGC 4 cut(s) 485, 520, 544, 604
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 6 cut(s) 64, 83, 98, 103, 488, 806
Bme18I GGWCC 2 cut(s) 90, 105
BmeRI GACNNNNNGTC 1 cut(s) 245
BmgT120I GGNCC 6 cut(s) 85, 90, 99, 105, 149, 197
BmiI GGNNCC 9 cut(s) 61, 86, 106, 121, 133, 151, 199, 300, 558
BmrFI CCNGG 6 cut(s) 64, 83, 98, 103, 488, 806
BpiI GAAGAC 2 cut(s) 9, 30
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 543
BpuMI CCSGG 3 cut(s) 83, 98, 103
BsaJI CCNNGG 4 cut(s) 82, 175, 819, 916
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 159
Bse118I RCCGGY 2 cut(s) 56, 87
Bse1I ACTGG 2 cut(s) 484, 560
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 3 cut(s) 64, 488, 806
BseDI CCNNGG 4 cut(s) 82, 175, 819, 916
BseGI GGATG 2 cut(s) 733, 915
BseLI CCNNNNNNNGG 2 cut(s) 63, 159
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 2 cut(s) 441, 758
BseNI ACTGG 2 cut(s) 484, 560
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 4 cut(s) 470, 505, 529, 589
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 2 cut(s) 401, 645
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 5 cut(s) 87, 101, 150, 198, 471
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 8 cut(s) 57, 72, 82, 88, 97, 102, 135, 147
BslI CCNNNNNNNGG 2 cut(s) 63, 159
BsnI GGCC 5 cut(s) 87, 101, 150, 198, 471
Bsp1286I GDGCHC 2 cut(s) 122, 786
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 4 cut(s) 412, 568, 647, 912
Bsp19I CCATGG 2 cut(s) 819, 916
BspACI CCGC 4 cut(s) 54, 160, 533, 645
BspANI GGCC 5 cut(s) 87, 101, 150, 198, 471
BspCNI CTCAG 2 cut(s) 442, 759
BspFNI CGCG 2 cut(s) 401, 645
BspLI GGNNCC 9 cut(s) 61, 86, 106, 121, 133, 151, 199, 300, 558
BspPI GGATC 2 cut(s) 655, 907
BspQI GCTCTTC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 891
BsrFI RCCGGY 2 cut(s) 56, 87
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 2 cut(s) 484, 560
BssAI RCCGGY 2 cut(s) 56, 87
BssECI CCNNGG 4 cut(s) 82, 175, 819, 916
BssMI GATC 4 cut(s) 412, 568, 647, 912
BssT1I CCWWGG 2 cut(s) 819, 916
Bst2UI CCWGG 3 cut(s) 64, 488, 806
Bst6I CTCTTC 2 cut(s) 191, 594
BstAUI TGTACA 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 450, 767
BstDSI CCRYGG 2 cut(s) 819, 916
BstF5I GGATG 2 cut(s) 733, 915
BstFNI CGCG 2 cut(s) 401, 645
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 4 cut(s) 415, 571, 650, 915
BstMBI GATC 4 cut(s) 412, 568, 647, 912
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 384, 539, 677
BstNI CCWGG 3 cut(s) 64, 488, 806
BstNSI RCATGY 2 cut(s) 525, 739
BstSCI CCNGG 6 cut(s) 62, 81, 96, 101, 486, 804
BstSFI CTRYAG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 2 cut(s) 401, 645
BstV1I GCAGC 4 cut(s) 470, 505, 529, 589
BstV2I GAAGAC 2 cut(s) 9, 30
BstX2I RGATCY 1 cut(s) 647
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 647
BsuRI GGCC 5 cut(s) 87, 101, 150, 198, 471
BtgI CCRYGG 2 cut(s) 819, 916
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 2 cut(s) 733, 915
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 2 cut(s) 56, 87
Cfr13I GGNCC 6 cut(s) 85, 90, 99, 105, 149, 197
CpoI CGGWCCG 1 cut(s) 90
CseI GACGC 1 cut(s) 407
Csp6I GTAC 5 cut(s) 193, 461, 477, 497, 718
CspI CGGWCCG 1 cut(s) 90
CviAII CATG 7 cut(s) 352, 522, 628, 736, 787, 820, 917
CviQI GTAC 5 cut(s) 193, 461, 477, 497, 718
DdeI CTNAG 2 cut(s) 450, 767
DpnI GATC 4 cut(s) 414, 570, 649, 914
DpnII GATC 4 cut(s) 412, 568, 647, 912
DraI TTTAAA 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 713
DriI GACNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 191, 594
Eam1105I GACNNNNNGTC 1 cut(s) 245
EarI CTCTTC 2 cut(s) 191, 594
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 819, 916
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 90, 105
EcoRII CCWGG 3 cut(s) 62, 486, 804
EcoT14I CCWWGG 2 cut(s) 819, 916
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 819, 916
FaeI CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
FatI CATG 7 cut(s) 351, 521, 627, 735, 786, 819, 916
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 484, 519, 543, 603
FokI GGATG 2 cut(s) 740, 922
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 484, 519, 543, 603
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 183
GluI GCNGC 4 cut(s) 484, 519, 543, 603
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 5 cut(s) 87, 101, 150, 198, 471
HapII CCGG 8 cut(s) 57, 72, 82, 88, 97, 102, 135, 147
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 184
Hin1II CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 4 cut(s) 4, 125, 166, 446
HpaII CCGG 8 cut(s) 57, 72, 82, 88, 97, 102, 135, 147
HphI GGTGA 2 cut(s) 149, 242
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 6 cut(s) 94, 124, 176, 451, 748, 939
Hpy188III TCNNGA 4 cut(s) 112, 528, 572, 593
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 632
HpyCH4V TGCA 5 cut(s) 218, 308, 521, 879, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 384, 539, 677
HpyF3I CTNAG 2 cut(s) 450, 767
Hsp92II CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
HspAI GCGC 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 412, 568, 647, 912
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 125, 562
Lsp1109I GCAGC 4 cut(s) 470, 505, 529, 589
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 137, 333
MalI GATC 4 cut(s) 414, 570, 649, 914
MbiI CCGCTC 1 cut(s) 533
MboI GATC 4 cut(s) 412, 568, 647, 912
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 2 cut(s) 122, 786
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 4 cut(s) 207, 309, 653, 921
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 117, 147
MnlI CCTC 5 cut(s) 19, 42, 170, 312, 445
Mox20I TGGCCA 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 471
MseI TTAA 2 cut(s) 222, 656
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 3 cut(s) 418, 602, 766
MspI CCGG 8 cut(s) 57, 72, 82, 88, 97, 102, 135, 147
MspR9I CCNGG 6 cut(s) 64, 83, 98, 103, 488, 806
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 3 cut(s) 64, 488, 806
MvnI CGCG 2 cut(s) 401, 645
MwoI GCNNNNNNNGC 3 cut(s) 384, 539, 677
NciI CCSGG 3 cut(s) 83, 98, 103
NcoI CCATGG 2 cut(s) 819, 916
NdeII GATC 4 cut(s) 412, 568, 647, 912
NlaIII CATG 7 cut(s) 355, 525, 631, 739, 790, 823, 920
NlaIV GGNNCC 9 cut(s) 61, 86, 106, 121, 133, 151, 199, 300, 558
NmuCI GTSAC 2 cut(s) 137, 333
NspI RCATGY 2 cut(s) 525, 739
PaeI GCATGC 1 cut(s) 525
PciI ACATGT 1 cut(s) 735
PciSI GCTCTTC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 4, 166, 446
PkrI GCNGC 4 cut(s) 485, 520, 544, 604
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 735
PshBI ATTAAT 1 cut(s) 656
PsiI TTATAA 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 62, 486, 804
PspGI CCWGG 3 cut(s) 62, 486, 804
PspN4I GGNNCC 9 cut(s) 61, 86, 106, 121, 133, 151, 199, 300, 558
PspPI GGNCC 6 cut(s) 85, 90, 99, 105, 149, 197
PsuI RGATCY 1 cut(s) 647
PvuII CAGCTG 3 cut(s) 418, 602, 766
RsaI GTAC 5 cut(s) 194, 462, 478, 498, 719
RsaNI GTAC 5 cut(s) 193, 461, 477, 497, 718
Rsr2I CGGWCCG 1 cut(s) 90
RsrII CGGWCCG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 222, 656
SatI GCNGC 4 cut(s) 484, 519, 543, 603
Sau3AI GATC 4 cut(s) 412, 568, 647, 912
Sau96I GGNCC 6 cut(s) 85, 90, 99, 105, 149, 197
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 6 cut(s) 64, 83, 98, 103, 488, 806
SduI GDGCHC 2 cut(s) 122, 786
SfcI CTRYAG 1 cut(s) 551
SinI GGWCC 2 cut(s) 90, 105
SphI GCATGC 1 cut(s) 525
Sse9I AATT 4 cut(s) 207, 309, 653, 921
SsiI CCGC 4 cut(s) 54, 160, 533, 645
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 6 cut(s) 62, 81, 96, 101, 486, 804
StyI CCWWGG 2 cut(s) 819, 916
TaqII GACCGA 1 cut(s) 284
TasI AATT 4 cut(s) 207, 309, 653, 921
TatI WGTACW 3 cut(s) 460, 476, 496
TfiI GAWTC 3 cut(s) 4, 166, 446
Tru1I TTAA 2 cut(s) 222, 656
Tru9I TTAA 2 cut(s) 222, 656
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 2 cut(s) 137, 333
TseI GCWGC 4 cut(s) 483, 518, 542, 602
Tsp45I GTSAC 2 cut(s) 137, 333
TspDTI ATGAA 3 cut(s) 17, 351, 651
TspGWI ACGGA 2 cut(s) 24, 97
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 2 cut(s) 90, 105
VspI ATTAAT 1 cut(s) 656
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 2 cut(s) 525, 739
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.