Prupe.1G151200_v2.0.a1

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008083
Physical Location & Seq
Forward (+)
11933978 .. 11939408
5431 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G151200.2

Sequence Viewer

Length: 1020 bp
ATGAATCTCTCGTCGTCCTCGTCTGCTTCTTCGTCGTCTTCGACCGGTTCGTGGTTCTCCGGCGTGGTCCGCGGCCGGTCGGACCGGTCCGGGTCCGTCAAGATGGGCTCGGATTCTGTCTCCGGCGGTTCCGGCGACTTTTCTGGTTCCGTTGTACGGAAGAACCAGTTCCGAGGCGTGCTCTTCAAGTACGGCCCAAAGCCTATTCAGGTTGCGTTTAAAACAGGTGATTATAGACAACAAGTCATTTTTATTGGTGGACTGACTGATGGTTTTCTGGCAACAGATTACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAGCCACTCTTGTCATCTTCATACAGTGGATATGGCACTTCCAGCTTGCAACAAGATGCAATGGAACTTGATCAGCTGATCAGTCACTTTATAAACAAAGAAGATTCTGAGGGTGTGGTACTGCTTGGCCATAGTACTGGCTGTCAGGATATTGTACATTACATGCGCACAAATGCTGCATGCTCCCGAGCGGTCCGTGCTGCCATTCTGCAGGCTCCAGTCAGTGATCGGGAATACAGAGCAACTCTTCCCGAAACAGCTGCTATGATTGACTTGGCTTCAACCATGATTAGTGAAGGCCGTGGGTCGGAGTTATTGCCAAGTGAAGCAGATCCAGGAGCCCCGATAACTGCCTATCGGTATCACTCTCTTTGTGCATACAACGGGGATGATGACTTGTTTAGTTCTGACCTTACTGACGACCAGCTGAGGTTGAGACTTGGGCACATGGCTAACACACCTTGCCAGGTTATGTATTCCATGGCTGATGAATATGTGCCAGACTATGTTGACAAGAAAGCATTGGTCCAAAGATTGTGTAAAGCAATGGGAGGTGCAGAGAAAGTTGAAATTGAATATGGTAATCACTCCCTTTCTAACAGAGTTGATGAAGCTGTCCATGCCATTATTGATTTTGTTAAGAGAGAGGGACCTAAAGGCTGGGATGATCCGTGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

340

Amino Acids

36.9

Weight (kDa)

5.21

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
Acc16I TGCGCA 1 cut(s) 506
AccBSI CCGCTC 1 cut(s) 530
AccII CGCG 1 cut(s) 72
AciI CCGC 4 cut(s) 70, 72, 126, 530
AclWI GGATC 2 cut(s) 665, 1001
AcoI YGGCCR 2 cut(s) 73, 466
AfaI GTAC 5 cut(s) 156, 191, 459, 475, 495
AfiI CCNNNNNNNGG 3 cut(s) 51, 156, 646
AgeI ACCGGT 2 cut(s) 44, 84
AgsI TTSAA 4 cut(s) 187, 621, 908, 914
AhdI GACNNNNNGTC 1 cut(s) 242
AjnI CCWGG 2 cut(s) 673, 804
AluBI AGCT 5 cut(s) 384, 415, 599, 766, 953
AluI AGCT 5 cut(s) 384, 415, 599, 766, 953
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 124, 769
AlwI GGATC 2 cut(s) 665, 1001
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 4 cut(s) 73, 193, 466, 637
ApeKI GCWGC 3 cut(s) 515, 539, 599
AsiGI ACCGGT 2 cut(s) 44, 84
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 8 cut(s) 67, 82, 87, 93, 194, 532, 865, 989
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 7 cut(s) 67, 82, 87, 93, 532, 865, 989
BaeGI GKGCMC 1 cut(s) 786
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 2 cut(s) 110, 682
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 767
BbvI GCAGC 3 cut(s) 502, 526, 586
BccI CCATC 2 cut(s) 97, 263
BceAI ACGGC 2 cut(s) 208, 624
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 2 cut(s) 675, 806
BclI TGATCA 2 cut(s) 409, 417
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 124, 769
BfmI CTRYAG 1 cut(s) 548
BisI GCNGC 4 cut(s) 73, 516, 540, 600
BlsI GCNGC 4 cut(s) 74, 517, 541, 601
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 3 cut(s) 91, 675, 806
Bme18I GGWCC 7 cut(s) 67, 82, 87, 93, 532, 865, 989
BmeRI GACNNNNNGTC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 8 cut(s) 67, 82, 87, 93, 194, 532, 865, 989
BmiI GGNNCC 7 cut(s) 94, 130, 148, 297, 555, 679, 990
BmrFI CCNGG 3 cut(s) 91, 675, 806
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 767
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 5 cut(s) 70, 172, 640, 819, 1010
BsaWI WCCGGW 2 cut(s) 44, 84
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 156, 646
Bse118I RCCGGY 3 cut(s) 44, 75, 84
Bse1I ACTGG 3 cut(s) 166, 481, 557
Bse3DI GCAATG 2 cut(s) 405, 891
BseBI CCWGG 2 cut(s) 675, 806
BseDI CCNNGG 5 cut(s) 70, 172, 640, 819, 1010
BseGI GGATG 2 cut(s) 733, 1009
BseLI CCNNNNNNNGG 3 cut(s) 51, 156, 646
BseMI GCAATG 2 cut(s) 405, 891
BseMII CTCAG 2 cut(s) 438, 758
BseNI ACTGG 3 cut(s) 166, 481, 557
BseSI GKGCMC 1 cut(s) 786
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 3 cut(s) 502, 526, 586
BseYI CCCAGC 1 cut(s) 999
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 3 cut(s) 45, 76, 80
BshFI GGCC 4 cut(s) 75, 195, 468, 639
BshTI ACCGGT 2 cut(s) 44, 84
BsiEI CGRYCG 3 cut(s) 45, 76, 80
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 7 cut(s) 45, 60, 76, 85, 90, 123, 132
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 3 cut(s) 51, 156, 646
BsmAI GTCTC 2 cut(s) 124, 769
BsmFI GGGAC 1 cut(s) 1002
BsnI GGCC 4 cut(s) 75, 195, 468, 639
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 4 cut(s) 110, 183, 682, 786
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 5 cut(s) 409, 417, 565, 670, 1006
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 4 cut(s) 70, 72, 126, 530
BspANI GGCC 4 cut(s) 75, 195, 468, 639
BspCNI CTCAG 2 cut(s) 439, 759
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 7 cut(s) 94, 130, 148, 297, 555, 679, 990
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 2 cut(s) 665, 1001
BspQI GCTCTTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 530
BsrDI GCAATG 2 cut(s) 405, 891
BsrFI RCCGGY 3 cut(s) 44, 75, 84
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 3 cut(s) 166, 481, 557
BssAI RCCGGY 3 cut(s) 44, 75, 84
BssECI CCNNGG 5 cut(s) 70, 172, 640, 819, 1010
BssMI GATC 5 cut(s) 409, 417, 565, 670, 1006
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 675, 806
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 2 cut(s) 188, 591
BstAUI TGTACA 1 cut(s) 493
BstC8I GCNNGC 4 cut(s) 179, 386, 520, 552
BstDEI CTNAG 2 cut(s) 447, 767
BstDSI CCRYGG 4 cut(s) 70, 640, 819, 1010
BstF5I GGATG 2 cut(s) 733, 1009
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 5 cut(s) 412, 420, 568, 673, 1009
BstMAI GTCTC 2 cut(s) 124, 769
BstMBI GATC 5 cut(s) 409, 417, 565, 670, 1006
BstMCI CGRYCG 3 cut(s) 45, 76, 80
BstMWI GCNNNNNNNGC 5 cut(s) 69, 132, 381, 536, 959
BstNI CCWGG 2 cut(s) 675, 806
BstNSI RCATGY 2 cut(s) 505, 522
BstSCI CCNGG 3 cut(s) 89, 673, 804
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 502, 526, 586
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 670
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 4 cut(s) 75, 195, 468, 639
BtgI CCRYGG 4 cut(s) 70, 640, 819, 1010
BtsCI GGATG 2 cut(s) 733, 1009
BtsIMutI CAGTG 2 cut(s) 370, 568
Cac8I GCNNGC 4 cut(s) 179, 386, 520, 552
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 3 cut(s) 44, 75, 84
Cfr13I GGNCC 8 cut(s) 67, 82, 87, 93, 194, 532, 865, 989
Cfr42I CCGCGG 1 cut(s) 73
CpoI CGGWCCG 3 cut(s) 82, 87, 532
Csp6I GTAC 5 cut(s) 155, 190, 458, 474, 494
CspAI ACCGGT 2 cut(s) 44, 84
CspI CGGWCCG 3 cut(s) 82, 87, 532
CviAII CATG 6 cut(s) 502, 519, 625, 787, 820, 959
CviQI GTAC 5 cut(s) 155, 190, 458, 474, 494
DdeI CTNAG 2 cut(s) 447, 767
DpnI GATC 5 cut(s) 411, 419, 567, 672, 1008
DpnII GATC 5 cut(s) 409, 417, 565, 670, 1006
DraI TTTAAA 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 73, 466
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 188, 591
Eam1105I GACNNNNNGTC 1 cut(s) 242
EarI CTCTTC 2 cut(s) 188, 591
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 819
Eco24I GRGCYC 2 cut(s) 110, 682
Eco47I GGWCC 7 cut(s) 67, 82, 87, 93, 532, 865, 989
Eco52I CGGCCG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 673, 804
EcoT14I CCWWGG 1 cut(s) 819
EcoT38I GRGCYC 2 cut(s) 110, 682
ErhI CCWWGG 1 cut(s) 819
FaeI CATG 6 cut(s) 505, 522, 628, 790, 823, 962
FaqI GGGAC 1 cut(s) 1002
FatI CATG 6 cut(s) 501, 518, 624, 786, 819, 958
FbaI TGATCA 2 cut(s) 409, 417
Fnu4HI GCNGC 4 cut(s) 73, 516, 540, 600
FokI GGATG 2 cut(s) 740, 1016
FriOI GRGCYC 2 cut(s) 110, 682
Fsp4HI GCNGC 4 cut(s) 73, 516, 540, 600
FspAI RTGCGCAY 1 cut(s) 506
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 1 cut(s) 506
GluI GCNGC 4 cut(s) 73, 516, 540, 600
GsaI CCCAGC 1 cut(s) 1003
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 4 cut(s) 75, 195, 468, 639
HapII CCGG 7 cut(s) 45, 60, 76, 85, 90, 123, 132
HhaI GCGC 1 cut(s) 507
Hin1II CATG 6 cut(s) 505, 522, 628, 790, 823, 962
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 3 cut(s) 4, 113, 443
HpaII CCGG 7 cut(s) 45, 60, 76, 85, 90, 123, 132
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 260, 850
Hpy188I TCNGA 6 cut(s) 82, 112, 173, 448, 649, 748
Hpy188III TCNNGA 5 cut(s) 100, 485, 525, 569, 590
Hpy8I GTNNAC 2 cut(s) 260, 850
Hpy99I CGWCG 2 cut(s) 16, 37
HpyAV CCTTC 1 cut(s) 629
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 7 cut(s) 305, 388, 398, 518, 550, 716, 896
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 132, 381, 536, 959
HpyF3I CTNAG 2 cut(s) 447, 767
Hsp92II CATG 6 cut(s) 505, 522, 628, 790, 823, 962
HspAI GCGC 1 cut(s) 505
Ksp22I TGATCA 2 cut(s) 409, 417
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 5 cut(s) 409, 417, 565, 670, 1006
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 3 cut(s) 527, 559, 677
Lsp1109I GCAGC 3 cut(s) 502, 526, 586
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 330, 422
MalI GATC 5 cut(s) 411, 419, 567, 672, 1008
MbiI CCGCTC 1 cut(s) 530
MboI GATC 5 cut(s) 409, 417, 565, 670, 1006
MboII GAAGA 7 cut(s) 21, 30, 172, 175, 348, 452, 578
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 4 cut(s) 110, 183, 682, 786
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 2 cut(s) 306, 909
MluNI TGGCCA 1 cut(s) 468
MmeI TCCRAC 2 cut(s) 60, 627
MnlI CCTC 7 cut(s) 28, 167, 309, 442, 762, 884, 979
Mox20I TGGCCA 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 219, 978
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 4 cut(s) 72, 415, 599, 766
MspI CCGG 7 cut(s) 45, 60, 76, 85, 90, 123, 132
MspR9I CCNGG 3 cut(s) 91, 675, 806
MunI CAATTG 1 cut(s) 306
MvaI CCWGG 2 cut(s) 675, 806
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 69, 132, 381, 536, 959
NciI CCSGG 1 cut(s) 91
NcoI CCATGG 1 cut(s) 819
NdeII GATC 5 cut(s) 409, 417, 565, 670, 1006
NlaIII CATG 6 cut(s) 505, 522, 628, 790, 823, 962
NlaIV GGNNCC 7 cut(s) 94, 130, 148, 297, 555, 679, 990
NmuCI GTSAC 2 cut(s) 330, 422
NsbI TGCGCA 1 cut(s) 506
NspI RCATGY 2 cut(s) 505, 522
PaeI GCATGC 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 38, 47
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 3 cut(s) 4, 113, 443
PfoI TCCNGGA 1 cut(s) 673
PinAI ACCGGT 2 cut(s) 44, 84
PkrI GCNGC 4 cut(s) 74, 517, 541, 601
PpuMI RGGWCCY 1 cut(s) 989
PsiI TTATAA 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 2 cut(s) 673, 804
PspFI CCCAGC 1 cut(s) 999
PspGI CCWGG 2 cut(s) 673, 804
PspN4I GGNNCC 7 cut(s) 94, 130, 148, 297, 555, 679, 990
PspPI GGNCC 8 cut(s) 67, 82, 87, 93, 194, 532, 865, 989
PspPPI RGGWCCY 1 cut(s) 989
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 1 cut(s) 670
PvuII CAGCTG 3 cut(s) 415, 599, 766
RsaI GTAC 5 cut(s) 156, 191, 459, 475, 495
RsaNI GTAC 5 cut(s) 155, 190, 458, 474, 494
Rsr2I CGGWCCG 3 cut(s) 82, 87, 532
RsrII CGGWCCG 3 cut(s) 82, 87, 532
SacII CCGCGG 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 219, 978
SatI GCNGC 4 cut(s) 73, 516, 540, 600
Sau3AI GATC 5 cut(s) 409, 417, 565, 670, 1006
Sau96I GGNCC 8 cut(s) 67, 82, 87, 93, 194, 532, 865, 989
ScaI AGTACT 1 cut(s) 475
ScrFI CCNGG 3 cut(s) 91, 675, 806
SduI GDGCHC 4 cut(s) 110, 183, 682, 786
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 548
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SinI GGWCC 7 cut(s) 67, 82, 87, 93, 532, 865, 989
SphI GCATGC 1 cut(s) 522
Sse9I AATT 2 cut(s) 306, 909
SsiI CCGC 4 cut(s) 70, 72, 126, 530
StyD4I CCNGG 3 cut(s) 89, 673, 804
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 41
TasI AATT 2 cut(s) 306, 909
TatI WGTACW 2 cut(s) 473, 493
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 3 cut(s) 4, 113, 443
Tru1I TTAA 2 cut(s) 219, 978
Tru9I TTAA 2 cut(s) 219, 978
TscAI CASTG 2 cut(s) 370, 568
TseFI GTSAC 2 cut(s) 330, 422
TseI GCWGC 3 cut(s) 515, 539, 599
Tsp45I GTSAC 2 cut(s) 330, 422
TspDTI ATGAA 4 cut(s) 17, 348, 843, 963
TspGWI ACGGA 5 cut(s) 85, 139, 172, 524, 999
TspRI CASTG 2 cut(s) 370, 568
VpaK11BI GGWCC 7 cut(s) 67, 82, 87, 93, 532, 865, 989
XceI RCATGY 2 cut(s) 505, 522
XmnI GAANNNNTTC 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.