Rroxscaffold_5G00361550

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008083
Physical Location & Seq
Reverse (-)
42247554 .. 42251099
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361550.1

Sequence Viewer

Length: 1029 bp
ATGAATCCCTCGCTGTCTTCTTCTTCTTCTCCTCCGTCTTCTACTTCGGCTTCCGCCGGTTCCTGGTTCTCCGGCGTTGTCCGGGGCCGGTCCGACCGGGCCGGGTCCGTCAAGATGGGCTCCGACTCTGGTTCCGGTGGTTCCGGTGACTTTTCCGGCCCCGTCGTGCGGAAGAATCAGTTCCGAGGGGCGCTCTTCAAGTACGGCCCCAAACCAATTCAGGTTGCATTTAAAACAGGTGATTATAGACAGCAAGTCATCTTTATTGGTGGATTGACTGATGGCTTTCTGGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGACAAGGAGAAATGGTCACTTGTTCAACTACTCATGTCATCTTCATACAATGGATATGGCACTTCCAGCTTGAAACAAGACGCGATGGAACTTGATCAGCTGATTAGTTATTTTATAAACAAAGAAGATTCTGAGGGTGTTGTACTGATTGGCCATAGTACTGGCTGCCAGGACATTGTACATTATATACGCACAAATGCTGCATGCTCTAGAGCGGTTCGTGCTGCCATTCTACAGGCTCCAGTCAGTGATCGGGAATACAGAGCAACTCTTCCTGAAACAGCTGCTATGATTGACTTGGCTTCAACCATGATAAATGAAGGTCGCGGATCTCAATTAATGCCAAGTGAAGCAGATTTAGCCCCAATAACTGCCTATCGGTATCACTCACTTTGTGCATACAACGGGGATGATGACATGTTTAGTTCTGACCTTACTGATGACCAGCTGAGATTGAAACTTGGGCACATGACTAACACACCTTGCCAGGTTATTTATTCCATGGCTGATGAGTATGTGCCAGACTATGTTGACAAGAAGGCATTGGTTCAAAGATTGTGCAAAGCAATGGGTGGTGCAGAAAAGGTTGAAATTGAACATGGAAATCACTCCCTTTCTAACAGAGTTCATGAAGCTGTCGATGCGATGATTGATTTTGTTAAGAGAGACGGACCTAAAGGGTGGGATGATCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

342

Amino Acids

37.23

Weight (kDa)

5.31

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1749 PF08538 62 - 326 1.5e-67 Protein of unknown function (DUF1749)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AccBSI CCGCTC 1 cut(s) 542
AccII CGCG 2 cut(s) 410, 654
AciI CCGC 4 cut(s) 54, 169, 542, 654
AclWI GGATC 2 cut(s) 664, 1010
AcoI YGGCCR 1 cut(s) 478
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 4 cut(s) 203, 471, 487, 507
AfiI CCNNNNNNNGG 2 cut(s) 63, 168
AflIII ACRYGT 1 cut(s) 744
AgsI TTSAA 8 cut(s) 199, 353, 400, 633, 784, 878, 917, 923
AhdI GACNNNNNGTC 1 cut(s) 254
AjnI CCWGG 3 cut(s) 62, 495, 813
AluBI AGCT 5 cut(s) 396, 427, 611, 775, 962
AluI AGCT 5 cut(s) 396, 427, 611, 775, 962
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 2 cut(s) 664, 1010
AoxI GGCC 5 cut(s) 85, 99, 157, 205, 478
ApeKI GCWGC 4 cut(s) 492, 527, 551, 611
AseI ATTAAT 1 cut(s) 665
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 7 cut(s) 85, 90, 99, 105, 158, 206, 998
AsuC2I CCSGG 3 cut(s) 83, 98, 103
AsuHPI GGTGA 2 cut(s) 158, 251
AvaII GGWCC 3 cut(s) 90, 105, 998
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 480
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 9, 30
BbvI GCAGC 4 cut(s) 479, 514, 538, 598
BccI CCATC 3 cut(s) 109, 275, 406
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 3 cut(s) 64, 497, 815
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 3 cut(s) 83, 98, 103
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 4 cut(s) 493, 528, 552, 612
BlsI GCNGC 4 cut(s) 494, 529, 553, 613
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 6 cut(s) 64, 83, 98, 103, 497, 815
Bme18I GGWCC 3 cut(s) 90, 105, 998
BmeRI GACNNNNNGTC 1 cut(s) 254
BmgT120I GGNCC 7 cut(s) 85, 90, 99, 105, 158, 206, 998
BmrFI CCNGG 6 cut(s) 64, 83, 98, 103, 497, 815
BmsI GCATC 1 cut(s) 958
BpiI GAAGAC 2 cut(s) 9, 30
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 552
BpuMI CCSGG 3 cut(s) 83, 98, 103
BsaJI CCNNGG 4 cut(s) 82, 184, 828, 1019
BsaWI WCCGGW 2 cut(s) 134, 143
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 168
Bse118I RCCGGY 2 cut(s) 56, 87
Bse1I ACTGG 2 cut(s) 493, 569
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 3 cut(s) 64, 497, 815
BseDI CCNNGG 4 cut(s) 82, 184, 828, 1019
BseGI GGATG 2 cut(s) 742, 1018
BseLI CCNNNNNNNGG 2 cut(s) 63, 168
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 2 cut(s) 450, 767
BseNI ACTGG 2 cut(s) 493, 569
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 4 cut(s) 479, 514, 538, 598
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 2 cut(s) 410, 654
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 5 cut(s) 87, 101, 159, 207, 480
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 9 cut(s) 57, 72, 82, 88, 97, 102, 135, 144, 156
BslI CCNNNNNNNGG 2 cut(s) 63, 168
BsmAI GTCTC 1 cut(s) 987
BsmBI CGTCTC 1 cut(s) 987
BsnI GGCC 5 cut(s) 87, 101, 159, 207, 480
Bsp1286I GDGCHC 2 cut(s) 122, 795
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 4 cut(s) 421, 577, 656, 1015
Bsp19I CCATGG 2 cut(s) 828, 1019
BspACI CCGC 4 cut(s) 54, 169, 542, 654
BspANI GGCC 5 cut(s) 87, 101, 159, 207, 480
BspCNI CTCAG 2 cut(s) 451, 768
BspFNI CGCG 2 cut(s) 410, 654
BspHI TCATGA 1 cut(s) 955
BspPI GGATC 2 cut(s) 664, 1010
BspQI GCTCTTC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 2 cut(s) 56, 87
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 2 cut(s) 493, 569
BssAI RCCGGY 2 cut(s) 56, 87
BssECI CCNNGG 4 cut(s) 82, 184, 828, 1019
BssMI GATC 4 cut(s) 421, 577, 656, 1015
BssT1I CCWWGG 2 cut(s) 828, 1019
Bst2UI CCWGG 3 cut(s) 64, 497, 815
Bst6I CTCTTC 2 cut(s) 200, 603
BstAUI TGTACA 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 2 cut(s) 459, 776
BstDSI CCRYGG 2 cut(s) 828, 1019
BstF5I GGATG 2 cut(s) 742, 1018
BstFNI CGCG 2 cut(s) 410, 654
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 4 cut(s) 424, 580, 659, 1018
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 4 cut(s) 421, 577, 656, 1015
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 393, 548, 686, 968
BstNI CCWGG 3 cut(s) 64, 497, 815
BstNSI RCATGY 2 cut(s) 534, 748
BstSCI CCNGG 6 cut(s) 62, 81, 96, 101, 495, 813
BstSFI CTRYAG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 2 cut(s) 410, 654
BstV1I GCAGC 4 cut(s) 479, 514, 538, 598
BstV2I GAAGAC 2 cut(s) 9, 30
BstX2I RGATCY 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 656
BsuRI GGCC 5 cut(s) 87, 101, 159, 207, 480
BtgI CCRYGG 2 cut(s) 828, 1019
BtgZI GCGATG 2 cut(s) 425, 986
BtsCI GGATG 2 cut(s) 742, 1018
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 532
CciI TCATGA 1 cut(s) 955
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 2 cut(s) 56, 87
Cfr13I GGNCC 7 cut(s) 85, 90, 99, 105, 158, 206, 998
CpoI CGGWCCG 1 cut(s) 90
CseI GACGC 1 cut(s) 416
Csp6I GTAC 4 cut(s) 202, 470, 486, 506
CspI CGGWCCG 1 cut(s) 90
CviAII CATG 9 cut(s) 361, 531, 637, 745, 796, 829, 926, 956, 1020
CviQI GTAC 4 cut(s) 202, 470, 486, 506
DdeI CTNAG 2 cut(s) 459, 776
DpnI GATC 4 cut(s) 423, 579, 658, 1017
DpnII GATC 4 cut(s) 421, 577, 656, 1015
DraI TTTAAA 1 cut(s) 232
DraIII CACNNNGTG 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 200, 603
Eam1105I GACNNNNNGTC 1 cut(s) 254
EarI CTCTTC 2 cut(s) 200, 603
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 828, 1019
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 3 cut(s) 90, 105, 998
EcoRII CCWGG 3 cut(s) 62, 495, 813
EcoT14I CCWWGG 2 cut(s) 828, 1019
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 828, 1019
Esp3I CGTCTC 1 cut(s) 987
FaeI CATG 9 cut(s) 364, 534, 640, 748, 799, 832, 929, 959, 1023
FatI CATG 9 cut(s) 360, 530, 636, 744, 795, 828, 925, 955, 1019
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 493, 528, 552, 612
FokI GGATG 2 cut(s) 749, 1025
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 493, 528, 552, 612
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 192
GluI GCNGC 4 cut(s) 493, 528, 552, 612
GsuI CTGGAG 1 cut(s) 552
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 5 cut(s) 87, 101, 159, 207, 480
HapII CCGG 9 cut(s) 57, 72, 82, 88, 97, 102, 135, 144, 156
HgaI GACGC 1 cut(s) 416
HhaI GCGC 1 cut(s) 193
Hin1II CATG 9 cut(s) 364, 534, 640, 748, 799, 832, 929, 959, 1023
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 4 cut(s) 4, 125, 175, 455
HpaII CCGG 9 cut(s) 57, 72, 82, 88, 97, 102, 135, 144, 156
HphI GGTGA 2 cut(s) 158, 251
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 5 cut(s) 94, 124, 185, 460, 757
Hpy188III TCNNGA 5 cut(s) 112, 537, 581, 602, 956
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 641, 859
HpyCH4V TGCA 6 cut(s) 227, 317, 530, 725, 888, 905
HpyF10VI GCNNNNNNNGC 4 cut(s) 393, 548, 686, 968
HpyF3I CTNAG 2 cut(s) 459, 776
Hsp92II CATG 9 cut(s) 364, 534, 640, 748, 799, 832, 929, 959, 1023
HspAI GCGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 421, 577, 656, 1015
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 125, 571
Lsp1109I GCAGC 4 cut(s) 479, 514, 538, 598
LweI GCATC 1 cut(s) 958
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 146, 342
MalI GATC 4 cut(s) 423, 579, 658, 1017
MbiI CCGCTC 1 cut(s) 542
MboI GATC 4 cut(s) 421, 577, 656, 1015
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 2 cut(s) 122, 795
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 5 cut(s) 216, 318, 662, 918, 1024
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 117, 147
MnlI CCTC 5 cut(s) 19, 42, 179, 321, 454
Mox20I TGGCCA 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 480
MseI TTAA 3 cut(s) 231, 665, 987
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 3 cut(s) 427, 611, 775
MspI CCGG 9 cut(s) 57, 72, 82, 88, 97, 102, 135, 144, 156
MspR9I CCNGG 6 cut(s) 64, 83, 98, 103, 497, 815
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 3 cut(s) 64, 497, 815
MvnI CGCG 2 cut(s) 410, 654
MwoI GCNNNNNNNGC 4 cut(s) 393, 548, 686, 968
NciI CCSGG 3 cut(s) 83, 98, 103
NcoI CCATGG 2 cut(s) 828, 1019
NdeII GATC 4 cut(s) 421, 577, 656, 1015
NlaIII CATG 9 cut(s) 364, 534, 640, 748, 799, 832, 929, 959, 1023
NmuCI GTSAC 2 cut(s) 146, 342
NspI RCATGY 2 cut(s) 534, 748
PaeI GCATGC 1 cut(s) 534
PagI TCATGA 1 cut(s) 955
PciI ACATGT 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 4, 175, 455
PkrI GCNGC 4 cut(s) 494, 529, 553, 613
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 744
PshBI ATTAAT 1 cut(s) 665
PsiI TTATAA 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 62, 495, 813
PspGI CCWGG 3 cut(s) 62, 495, 813
PspPI GGNCC 7 cut(s) 85, 90, 99, 105, 158, 206, 998
PsuI RGATCY 1 cut(s) 656
PvuII CAGCTG 3 cut(s) 427, 611, 775
RsaI GTAC 4 cut(s) 203, 471, 487, 507
RsaNI GTAC 4 cut(s) 202, 470, 486, 506
Rsr2I CGGWCCG 1 cut(s) 90
RsrII CGGWCCG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 231, 665, 987
SatI GCNGC 4 cut(s) 493, 528, 552, 612
Sau3AI GATC 4 cut(s) 421, 577, 656, 1015
Sau96I GGNCC 7 cut(s) 85, 90, 99, 105, 158, 206, 998
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 6 cut(s) 64, 83, 98, 103, 497, 815
SduI GDGCHC 2 cut(s) 122, 795
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 1 cut(s) 560
SinI GGWCC 3 cut(s) 90, 105, 998
SphI GCATGC 1 cut(s) 534
Sse9I AATT 5 cut(s) 216, 318, 662, 918, 1024
SsiI CCGC 4 cut(s) 54, 169, 542, 654
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 6 cut(s) 62, 81, 96, 101, 495, 813
StyI CCWWGG 2 cut(s) 828, 1019
TaqI TCGA 1 cut(s) 966
TasI AATT 5 cut(s) 216, 318, 662, 918, 1024
TatI WGTACW 3 cut(s) 469, 485, 505
TfiI GAWTC 3 cut(s) 4, 175, 455
Tru1I TTAA 3 cut(s) 231, 665, 987
Tru9I TTAA 3 cut(s) 231, 665, 987
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 146, 342
TseI GCWGC 4 cut(s) 492, 527, 551, 611
Tsp45I GTSAC 2 cut(s) 146, 342
TspDTI ATGAA 5 cut(s) 17, 360, 660, 944, 972
TspGWI ACGGA 3 cut(s) 24, 97, 1011
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 3 cut(s) 90, 105, 998
VspI ATTAAT 1 cut(s) 665
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 2 cut(s) 534, 748
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.