AT5G20130

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6797361 .. 6798899
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20130.1

Sequence Viewer

Length: 609 bp
ATGGGACACGTAACGAGGCTATTGATAAACCCTTCGTCTTCCTCGCCACTTCTCCACCTCCGTTGTTGCCACCGGACTCTTGACCCTAACTCTGTCTTCTCTCTTCGAACCTCAATCACCAAAAGCAAGGGACGATTCTCTTGTCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCTTGGTGGGAAGAAGAATGAGTTTGAGAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATCCGGTGGCGGAAATGGTGGTAAAGGTGGAGGAGGAGGAGGTTGGTTTGGAGGTGGTGGTTGGTTTAGTGGCGACCATTTCTGGAAAGAGGCACAACAGATTGCCTTTACCCTCTTAGCAATACTTGCCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCCGTTGTTGTATGCGTTGCGAGGAACACGGGAAGGTTTGTCTTCTCTAAGCTCCAAACTCATGGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAAGAAGGAAGGTTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.95

Weight (kDa)

9.59

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013287)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 2 cut(s) 156, 270
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 169, 595
AflIII ACRYGT 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 3 cut(s) 179, 492, 515
AluI AGCT 3 cut(s) 179, 492, 515
Aor13HI TCCGGA 1 cut(s) 588
Aor51HI AGCGCT 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 425
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 109, 425, 542
AsuII TTCGAA 1 cut(s) 106
BbsI GAAGAC 3 cut(s) 30, 88, 474
BbvI GCAGC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 374
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 2 cut(s) 157, 426
BlsI GCNGC 2 cut(s) 158, 427
BmiI GGNNCC 1 cut(s) 565
BpiI GAAGAC 3 cut(s) 30, 88, 474
Bpu14I TTCGAA 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 10
BsaWI WCCGGW 3 cut(s) 72, 263, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 595
BseAI TCCGGA 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 169, 595
BseMII CTCAG 1 cut(s) 552
BseRI GAGGAG 5 cut(s) 185, 306, 309, 312, 557
BseXI GCAGC 1 cut(s) 412
BsiSI CCGG 4 cut(s) 73, 153, 264, 589
BslFI GGGAC 3 cut(s) 18, 144, 248
BslI CCNNNNNNNGG 2 cut(s) 169, 595
BsmFI GGGAC 3 cut(s) 18, 144, 248
Bsp119I TTCGAA 1 cut(s) 106
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 156, 270
BspCNI CTCAG 1 cut(s) 551
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 565
BspT104I TTCGAA 1 cut(s) 106
BssMI GATC 1 cut(s) 243
Bst6I CTCTTC 2 cut(s) 108, 502
BstAPI GCANNNNNTGC 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 10
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 376, 488, 538
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 3 cut(s) 30, 88, 474
BstXI CCANNNNNNTGG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 200
CspCI CAANNNNNGTGG 4 cut(s) 44, 79, 508, 543
CviAII CATG 2 cut(s) 421, 502
CviJI RGCY 5 cut(s) 19, 179, 425, 492, 515
CviKI_1 RGCY 5 cut(s) 19, 179, 425, 492, 515
DdeI CTNAG 3 cut(s) 376, 488, 538
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 108, 502
EarI CTCTTC 2 cut(s) 108, 502
EciI GGCGGA 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 199
FaeI CATG 2 cut(s) 424, 505
FaiI YATR 5 cut(s) 396, 398, 422, 453, 503
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 3 cut(s) 18, 144, 248
FatI CATG 2 cut(s) 420, 501
Fnu4HI GCNGC 2 cut(s) 157, 426
Fsp4HI GCNGC 2 cut(s) 157, 426
GlaI GCGC 1 cut(s) 199
GluI GCNGC 2 cut(s) 157, 426
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 4 cut(s) 73, 153, 264, 589
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 424, 505
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 3 cut(s) 76, 135, 260
HpaII CCGG 4 cut(s) 73, 153, 264, 589
HphI GGTGA 3 cut(s) 109, 425, 542
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 4 cut(s) 80, 247, 343, 589
HpyAV CCTTC 4 cut(s) 42, 467, 550, 554
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 3 cut(s) 376, 488, 538
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 424, 505
HspAI GCGC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 588
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 172, 497
LpnPI CCDG 6 cut(s) 86, 166, 176, 277, 328, 602
Lsp1109I GCAGC 1 cut(s) 412
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 10, 530, 602
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 9 cut(s) 30, 88, 95, 223, 226, 269, 474, 519, 565
MlyI GAGTC 1 cut(s) 70
MroI TCCGGA 1 cut(s) 588
MseI TTAA 1 cut(s) 437
MspI CCGG 4 cut(s) 73, 153, 264, 589
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 243
NlaIII CATG 2 cut(s) 424, 505
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 2 cut(s) 530, 602
NspV TTCGAA 1 cut(s) 106
PfeI GAWTC 2 cut(s) 135, 260
PkrI GCNGC 2 cut(s) 158, 427
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 565
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 2 cut(s) 157, 426
Sau3AI GATC 1 cut(s) 243
SchI GAGTC 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 106
SsiI CCGC 2 cut(s) 156, 270
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 106
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 135, 260
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 2 cut(s) 530, 602
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 2 cut(s) 530, 602
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.