Rmu_sc0003749.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003749.1
OG0013287
Physical Location & Seq
Reverse (-)
54716 .. 60040
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003749.1_g000010.1.cds

Sequence Viewer

Length: 768 bp
atggcgctgcttctcaacctaagctcgccgaccccaacctcattccagtcgactcgtcacctccccaccaccactcgctcccgccaaaatgaagctgcccaagaatggtcgtctctgctccacaacctcaagtcccacggcagattctcttgcctcttctcaggcaatcgcagagaggaccaagcgcggaaagcattagaaggtgccctgggtggaaagaaagatgaatttgagaaatgggacaaagagattaagaaaagagaggaggtgggtggaggcagtaatggtggtggagggggctggattgggtggggcagacgcttggggtggtccaatggtgacgatttctggcaagaagctcaacaagcaagtcttgctgtcttaggcattcttgtgatgtatctcattgttgtgaaaggagagctgatgcttgctgtcgtcttcaatccactgttgtatgccttgcgagggacaagaaacgggttcactttcattactgacaaaatcttaaggaggacagatggtctcaaatacaccaacacagtctggaaaactgctgtgaaggttgatagcacaaaagagatgcttggaacctttagtccacaattggagccttatacacatgttttgcctgaggacacaaccccatctggtatgtttgctaggggaacttattcagctagaagcaagtttcttgatgatgacaacacatgctacttggagatcaattacacctttgatattaggaaagactgggcagcagcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.63

Weight (kDa)

8.98

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20130 AT5G20130
fragaria_vesca FvH4_3g00960
malus_domestica MD05G1358000.v1.1 MD10G1331900.v1.1
prunus_persica Prupe.4G010200_v2.0.a1
pyrus_communis pycom05g32380
rosa_chinensis RchiOBHm_Chr5g0001481
rosa_laevigata RLG00000030932
rosa_multiflora Rmu_co8090336.1_g000001 Rmu_sc0003749.1_g000010
rosa_roxburghii Rroxscaffold_1G00074910
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011500 Rh5BG014000 Rh5CG012500 Rh5DG011700
rosa_wichuraiana Rw5G001090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 82, 187
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 105, 468
AflII CTTAAG 1 cut(s) 508
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 1 cut(s) 445
AhdI GACNNNNNGTC 1 cut(s) 522
AjnI CCWGG 1 cut(s) 207
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 5 cut(s) 24, 95, 359, 424, 680
AluI AGCT 5 cut(s) 24, 95, 359, 424, 680
Alw26I GTCTC 2 cut(s) 117, 530
ApeKI GCWGC 4 cut(s) 7, 95, 758, 761
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 673
AspLEI GCGC 2 cut(s) 7, 187
AspS9I GGNCC 2 cut(s) 178, 330
AsuHPI GGTGA 2 cut(s) 50, 350
AvaII GGWCC 2 cut(s) 178, 330
AxyI CCTNAGG 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 515, 655
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 117, 530
BfaI CTAG 2 cut(s) 663, 681
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 508
BisI GCNGC 4 cut(s) 8, 96, 759, 762
BlsI GCNGC 4 cut(s) 9, 97, 760, 763
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 178, 330
BmeRI GACNNNNNGTC 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 178, 330
BmiI GGNNCC 3 cut(s) 205, 592, 612
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 2 cut(s) 417, 573
BmuI ACTGGG 1 cut(s) 763
BpiI GAAGAC 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 3 cut(s) 136, 207, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 468
Bse1I ACTGG 2 cut(s) 46, 758
Bse21I CCTNAGG 1 cut(s) 633
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 136, 207, 208
BseLI CCNNNNNNNGG 2 cut(s) 105, 468
BseMII CTCAG 2 cut(s) 174, 624
BseNI ACTGG 2 cut(s) 46, 758
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 203
BslFI GGGAC 3 cut(s) 118, 254, 484
BslI CCNNNNNNNGG 2 cut(s) 105, 468
BsmAI GTCTC 2 cut(s) 117, 530
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 3 cut(s) 118, 254, 484
BsmI GAATGC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 723
BspACI CCGC 2 cut(s) 82, 187
BspCNI CTCAG 2 cut(s) 173, 625
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 205, 592, 612
BspT107I GGYRCC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 530
BsrI ACTGG 2 cut(s) 46, 758
BssECI CCNNGG 3 cut(s) 136, 207, 208
BssMI GATC 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 453, 544
Bst6I CTCTTC 1 cut(s) 161
BstAFI CTTAAG 1 cut(s) 508
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 26, 432
BstDEI CTNAG 4 cut(s) 20, 160, 382, 633
BstDSI CCRYGG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 187
BstKTI GATC 1 cut(s) 726
BstMAI GTCTC 2 cut(s) 117, 530
BstMBI GATC 1 cut(s) 723
BstMWI GCNNNNNNNGC 3 cut(s) 191, 365, 374
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 626, 714
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 633
BtgI CCRYGG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 26, 432
CfoI GCGC 2 cut(s) 7, 187
Cfr13I GGNCC 2 cut(s) 178, 330
CseI GACGC 1 cut(s) 327
CviAII CATG 2 cut(s) 623, 711
CviJI RGCY 7 cut(s) 24, 95, 300, 359, 424, 613, 680
CviKI_1 RGCY 7 cut(s) 24, 95, 300, 359, 424, 613, 680
DdeI CTNAG 4 cut(s) 20, 160, 382, 633
DpnI GATC 1 cut(s) 725
DpnII GATC 1 cut(s) 723
DriI GACNNNNNGTC 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 178, 330
Eco81I CCTNAGG 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 2 cut(s) 626, 714
FaiI YATR 5 cut(s) 459, 618, 624, 656, 712
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 570, 602
FaqI GGGAC 3 cut(s) 118, 254, 484
FatI CATG 2 cut(s) 622, 710
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 8, 96, 759, 762
Fsp4HI GCNGC 4 cut(s) 8, 96, 759, 762
FspBI CTAG 2 cut(s) 663, 681
GlaI GCGC 2 cut(s) 6, 186
GluI GCNGC 4 cut(s) 8, 96, 759, 762
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 1 cut(s) 327
HhaI GCGC 2 cut(s) 7, 187
Hin1II CATG 2 cut(s) 626, 714
Hin6I GCGC 2 cut(s) 5, 185
HinP1I GCGC 2 cut(s) 5, 185
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 52, 144
HphI GGTGA 2 cut(s) 50, 350
Hpy166II GTNNAC 3 cut(s) 51, 486, 602
Hpy188III TCNNGA 2 cut(s) 547, 695
Hpy8I GTNNAC 3 cut(s) 51, 486, 602
HpyAV CCTTC 2 cut(s) 194, 556
HpyCH4III ACNGT 2 cut(s) 453, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 365, 374
HpyF3I CTNAG 4 cut(s) 20, 160, 382, 633
Hsp92II CATG 2 cut(s) 626, 714
HspAI GCGC 2 cut(s) 5, 185
Kzo9I GATC 1 cut(s) 723
LmnI GCTCC 3 cut(s) 83, 123, 610
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 417, 573
MaeI CTAG 2 cut(s) 663, 681
MaeIII GTNAC 2 cut(s) 56, 338
MalI GATC 1 cut(s) 725
MboI GATC 1 cut(s) 723
MboII GAAGA 2 cut(s) 148, 433
MfeI CAATTG 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 227, 605, 727
MlyI GAGTC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 673
MseI TTAA 2 cut(s) 252, 509
MslI CAYNNNNRTG 2 cut(s) 392, 410
MspCI CTTAAG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 191, 365, 374
NdeII GATC 1 cut(s) 723
NlaIII CATG 2 cut(s) 626, 714
NlaIV GGNNCC 3 cut(s) 205, 592, 612
NmuCI GTSAC 2 cut(s) 56, 338
NspI RCATGY 2 cut(s) 626, 714
PasI CCCWGGG 1 cut(s) 208
PciI ACATGT 1 cut(s) 622
PctI GAATGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 9, 97, 760, 763
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PscI ACATGT 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 205, 592, 612
PspPI GGNCC 2 cut(s) 178, 330
RseI CAYNNNNRTG 2 cut(s) 392, 410
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 252, 509
SatI GCNGC 4 cut(s) 8, 96, 759, 762
Sau3AI GATC 1 cut(s) 723
Sau96I GGNCC 2 cut(s) 178, 330
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 2 cut(s) 417, 573
SinI GGWCC 2 cut(s) 178, 330
SmiMI CAYNNNNRTG 2 cut(s) 392, 410
SmlI CTYRAG 2 cut(s) 128, 508
SmoI CTYRAG 2 cut(s) 128, 508
Sse9I AATT 3 cut(s) 227, 605, 727
SsiI CCGC 2 cut(s) 82, 187
SspMI CTAG 2 cut(s) 663, 681
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 453, 544
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 227, 605, 727
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 252, 509
Tru9I TTAA 2 cut(s) 252, 509
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 2 cut(s) 56, 338
TseI GCWGC 4 cut(s) 7, 95, 758, 761
Tsp45I GTSAC 2 cut(s) 56, 338
TspDTI ATGAA 3 cut(s) 105, 240, 481
TspRI CASTG 1 cut(s) 456
Vha464I CTTAAG 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 178, 330
XapI RAATTY 1 cut(s) 227
XceI RCATGY 2 cut(s) 626, 714
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 2 cut(s) 663, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.