Rmu_co8090336.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8090336.1
OG0013287
Physical Location & Seq
Reverse (-)
1 .. 295
295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8090336.1_g000001.1.cds

Sequence Viewer

Length: 255 bp
atgaatttaactctgctatttctgtggttacaggaccaagcgcggaaagcattagaaggtgccctgggtggaaagaaagatgaatttgagaaatgggacaaagagattaagaaaagagaggaggtgggtggaggcagtaatggtggtggagggggctggattgggtggggcagacgcttggggtggtccaatggtgacgatttctggcaagaagctcaacaagcaagtcttgctgtcttaggcattcttgtgatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.41

Weight (kDa)

5.36

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20130 AT5G20130
fragaria_vesca FvH4_3g00960
malus_domestica MD05G1358000.v1.1 MD10G1331900.v1.1
prunus_persica Prupe.4G010200_v2.0.a1
pyrus_communis pycom05g32380
rosa_chinensis RchiOBHm_Chr5g0001481
rosa_laevigata RLG00000030932
rosa_multiflora Rmu_co8090336.1_g000001 Rmu_sc0003749.1_g000010
rosa_roxburghii Rroxscaffold_1G00074910
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011500 Rh5BG014000 Rh5CG012500 Rh5DG011700
rosa_wichuraiana Rw5G001090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 43
AciI CCGC 1 cut(s) 43
AcsI RAATTY 2 cut(s) 4, 83
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
ApoI RAATTY 2 cut(s) 4, 83
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 34, 186
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 34, 186
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 34, 186
BmgT120I GGNCC 2 cut(s) 34, 186
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 63, 64
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 63, 64
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 64
BspACI CCGC 1 cut(s) 43
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 63, 64
Bst2UI CCWGG 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 47, 221, 230
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 43
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 34, 186
CseI GACGC 1 cut(s) 183
CviJI RGCY 2 cut(s) 156, 215
CviKI_1 RGCY 2 cut(s) 156, 215
DdeI CTNAG 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 34, 186
EcoRII CCWGG 1 cut(s) 63
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 110
GlaI GCGC 1 cut(s) 42
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HphI GGTGA 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 221, 230
HpyF3I CTNAG 1 cut(s) 238
HspAI GCGC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 17, 50, 77, 142, 190
MaeIII GTNAC 2 cut(s) 27, 194
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 4, 83
MnlI CCTC 4 cut(s) 112, 115, 125, 143
MseI TTAA 2 cut(s) 8, 108
MslI CAYNNNNRTG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 243
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 47, 221, 230
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 194
PasI CCCWGGG 1 cut(s) 64
PctI GAATGC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 34, 186
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 2 cut(s) 8, 108
Sau96I GGNCC 2 cut(s) 34, 186
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 64
SetI ASST 3 cut(s) 61, 126, 217
SinI GGWCC 2 cut(s) 34, 186
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 2 cut(s) 4, 83
SsiI CCGC 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 63
TasI AATT 2 cut(s) 4, 83
Tru1I TTAA 2 cut(s) 8, 108
Tru9I TTAA 2 cut(s) 8, 108
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 17, 96
VpaK11BI GGWCC 2 cut(s) 34, 186
XapI RAATTY 2 cut(s) 4, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.