RLG00000030932

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013287
Physical Location & Seq
Forward (+)
747109 .. 748812
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030932

Sequence Viewer

Length: 615 bp
ATGGCGCTGCTTCTCCACCTAAGCTCGCCGTCCCCAACCTCATTCCAGTCGACTCGTCACCTCCCCACCACCACTCGCTCCCGCCAAAATGAAGCTGCCCAAGAATGGTCGTCTCTGCTCCACAACCTCAATTCCCACGGCAGATTCTCTTGCCTCTTCTCAGGCAATCGCAGAGAGGACCAAGCGCGGAAAGCATTAGAAGGTGCCCTGGGTGGAAAGAAAGATGAATTTGAGAAATGGGACAAAGAGATTAAGAAAAGAGAGGAGGTGGGTGGAGGCAGTAATGGTGGTGGAGGGGGCTGGATTGGGTGGGGCAGACGCTTGGGGTGGTCCAATGGTGACGATTTCTGGCAAGAAGCACAACAAGCAAGTCTTGCTGTCTTAGGCATTCTTGTGATGTATCTCATTGTTGTGAAAGGAGAGCTGATGCTTGCTGTCGTCTTCAATCCACTGTTGTATGCCTTGCGAGGGACAAGAAACGGGTTCACTTTCATTACTGACAAAATCTTAAGGAGAACAGATGGTCATGCTTATATTGATAGTATCTCGAAGAAAGAAGCATATAGTCGTGTCTCTGCTAAAGAGAGTGTTGTGAGAAAATGGGGAAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.76

Weight (kDa)

9.63

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20130 AT5G20130
fragaria_vesca FvH4_3g00960
malus_domestica MD05G1358000.v1.1 MD10G1331900.v1.1
prunus_persica Prupe.4G010200_v2.0.a1
pyrus_communis pycom05g32380
rosa_chinensis RchiOBHm_Chr5g0001481
rosa_laevigata RLG00000030932
rosa_multiflora Rmu_co8090336.1_g000001 Rmu_sc0003749.1_g000010
rosa_roxburghii Rroxscaffold_1G00074910
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011500 Rh5BG014000 Rh5CG012500 Rh5DG011700
rosa_wichuraiana Rw5G001090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 82, 187
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 105, 468
AflII CTTAAG 1 cut(s) 508
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 3 cut(s) 24, 95, 424
AluI AGCT 3 cut(s) 24, 95, 424
Alw26I GTCTC 2 cut(s) 117, 577
ApeKI GCWGC 2 cut(s) 7, 95
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 2 cut(s) 7, 187
AspS9I GGNCC 2 cut(s) 178, 330
AsuHPI GGTGA 2 cut(s) 50, 350
AvaII GGWCC 2 cut(s) 178, 330
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 515
BceAI ACGGC 2 cut(s) 13, 154
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 117, 577
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 508
BisI GCNGC 2 cut(s) 8, 96
BlsI GCNGC 2 cut(s) 9, 97
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 178, 330
BmgT120I GGNCC 2 cut(s) 178, 330
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 136, 207, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 468
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 136, 207, 208
BseLI CCNNNNNNNGG 2 cut(s) 105, 468
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 203
BslFI GGGAC 3 cut(s) 16, 254, 484
BslI CCNNNNNNNGG 2 cut(s) 105, 468
BsmAI GTCTC 2 cut(s) 117, 577
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 3 cut(s) 16, 254, 484
BsmI GAATGC 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 208
BspACI CCGC 2 cut(s) 82, 187
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 508
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 136, 207, 208
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 161
BstAFI CTTAAG 1 cut(s) 508
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 26, 432
BstDEI CTNAG 3 cut(s) 20, 160, 382
BstDSI CCRYGG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 187
BstMAI GTCTC 2 cut(s) 117, 577
BstMWI GCNNNNNNNGC 3 cut(s) 191, 365, 374
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 26, 432
CfoI GCGC 2 cut(s) 7, 187
Cfr13I GGNCC 2 cut(s) 178, 330
CseI GACGC 1 cut(s) 327
CviAII CATG 1 cut(s) 527
CviJI RGCY 4 cut(s) 24, 95, 300, 424
CviKI_1 RGCY 4 cut(s) 24, 95, 300, 424
DdeI CTNAG 3 cut(s) 20, 160, 382
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 178, 330
EcoRII CCWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 1 cut(s) 530
FaiI YATR 5 cut(s) 459, 528, 534, 562, 564
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 3 cut(s) 16, 254, 484
FatI CATG 1 cut(s) 526
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 8, 96
Fsp4HI GCNGC 2 cut(s) 8, 96
GlaI GCGC 2 cut(s) 6, 186
GluI GCNGC 2 cut(s) 8, 96
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 1 cut(s) 327
HhaI GCGC 2 cut(s) 7, 187
Hin1II CATG 1 cut(s) 530
Hin6I GCGC 2 cut(s) 5, 185
HinP1I GCGC 2 cut(s) 5, 185
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 52, 144
HphI GGTGA 2 cut(s) 50, 350
Hpy166II GTNNAC 2 cut(s) 51, 486
Hpy188III TCNNGA 1 cut(s) 547
Hpy8I GTNNAC 2 cut(s) 51, 486
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 365, 374
HpyF3I CTNAG 3 cut(s) 20, 160, 382
Hsp92II CATG 1 cut(s) 530
HspAI GCGC 2 cut(s) 5, 185
LmnI GCTCC 2 cut(s) 83, 123
LpnPI CCDG 6 cut(s) 59, 147, 194, 221, 286, 334
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 56, 338
MboII GAAGA 3 cut(s) 148, 433, 562
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 130, 227
MlyI GAGTC 1 cut(s) 46
MseI TTAA 2 cut(s) 252, 509
MslI CAYNNNNRTG 2 cut(s) 392, 410
MspCI CTTAAG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 191, 365, 374
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 56, 338
PasI CCCWGGG 1 cut(s) 208
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 2 cut(s) 9, 97
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 178, 330
RseI CAYNNNNRTG 2 cut(s) 392, 410
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 252, 509
SatI GCNGC 2 cut(s) 8, 96
Sau96I GGNCC 2 cut(s) 178, 330
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 208
SetI ASST 9 cut(s) 21, 26, 41, 63, 97, 129, 205, 270, 426
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 2 cut(s) 178, 330
SmiMI CAYNNNNRTG 2 cut(s) 392, 410
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 2 cut(s) 130, 227
SsiI CCGC 2 cut(s) 82, 187
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 50, 548
TasI AATT 2 cut(s) 130, 227
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 252, 509
Tru9I TTAA 2 cut(s) 252, 509
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 2 cut(s) 56, 338
TseI GCWGC 2 cut(s) 7, 95
Tsp45I GTSAC 2 cut(s) 56, 338
TspDTI ATGAA 3 cut(s) 105, 240, 481
TspRI CASTG 1 cut(s) 456
Vha464I CTTAAG 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 178, 330
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.