Rh5AG011500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
775681 .. 778118
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG011500.1

Sequence Viewer

Length: 471 bp
ATGAATTTAACTCTGCTGTTTCTGTGGTTACAGGACCAAGCGCGGAAAGCATTAGAAGGTGCCCTGGGTGGAAAGAAAGATGAATTTGAGAAATGGGACAAAGAGATTAAGAAAAGAGAGGAGGTGGGTGGAGGCAGTAATGGTGGTGGAGGGGGCTGGATTGGGTGGGGCAGACGCTTGGGGTGGTCCAATGGTGACGATTTCTGGCAAGAAGCACAACAAGCAAGTCTTGCTGTCTTAGGCATTCTTGTGATGTATCTCATTGTTGTGAAAGGAGAGCTGATGCTTGCTGTCGTCTTCAATCCACTGTTGTATGCCTTGCGAGGGACAAGAAACGGGTTCACTTTCATTACTGACAAAATCTTAAGGAGGACAGATGGTCATGCGTATATTGATAGTATCTCGAAGAAAGAAGCATATAGTCATGTATCCGCTAAAGAGAGTGTTGTGAGAAAATGGGGAAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.43

Weight (kDa)

9.12

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013287)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 43
AciI CCGC 2 cut(s) 43, 432
AcsI RAATTY 2 cut(s) 4, 83
AfiI CCNNNNNNNGG 1 cut(s) 324
AflII CTTAAG 1 cut(s) 364
AgsI TTSAA 1 cut(s) 301
AhdI GACNNNNNGTC 1 cut(s) 378
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
ApoI RAATTY 2 cut(s) 4, 83
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 34, 186
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 34, 186
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 289
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 65
BciVI GTATCC 1 cut(s) 439
BfrI CTTAAG 1 cut(s) 364
BfuI GTATCC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 34, 186
BmeRI GACNNNNNGTC 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 34, 186
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 63, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 63, 64
BseLI CCNNNNNNNGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 59
BslFI GGGAC 2 cut(s) 110, 340
BslI CCNNNNNNNGG 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 110, 340
BsmI GAATGC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 64
BspACI CCGC 2 cut(s) 43, 432
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 63, 64
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 364
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 47, 221, 230
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 289
BsuI GTATCC 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 34, 186
CseI GACGC 1 cut(s) 183
CviAII CATG 2 cut(s) 383, 425
CviJI RGCY 2 cut(s) 156, 280
CviKI_1 RGCY 2 cut(s) 156, 280
DdeI CTNAG 1 cut(s) 238
DriI GACNNNNNGTC 1 cut(s) 378
Eam1105I GACNNNNNGTC 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 34, 186
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 386, 428
FaiI YATR 6 cut(s) 315, 384, 390, 418, 420, 426
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 2 cut(s) 110, 340
FatI CATG 2 cut(s) 382, 424
GlaI GCGC 1 cut(s) 42
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 386, 428
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 342
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 221, 230
HpyF3I CTNAG 1 cut(s) 238
Hsp92II CATG 2 cut(s) 386, 428
HspAI GCGC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 17, 50, 77, 142, 190
LweI GCATC 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 27, 194
MboII GAAGA 2 cut(s) 289, 418
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 4, 83
MnlI CCTC 6 cut(s) 112, 115, 125, 143, 317, 363
MseI TTAA 3 cut(s) 8, 108, 365
MslI CAYNNNNRTG 2 cut(s) 248, 266
MspCI CTTAAG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 243
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 47, 221, 230
NlaIII CATG 2 cut(s) 386, 428
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 194
PasI CCCWGGG 1 cut(s) 64
PctI GAATGC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 34, 186
RseI CAYNNNNRTG 2 cut(s) 248, 266
SaqAI TTAA 3 cut(s) 8, 108, 365
Sau96I GGNCC 2 cut(s) 34, 186
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 64
SetI ASST 3 cut(s) 61, 126, 282
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 2 cut(s) 34, 186
SmiMI CAYNNNNRTG 2 cut(s) 248, 266
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 2 cut(s) 4, 83
SsiI CCGC 2 cut(s) 43, 432
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 404
TasI AATT 2 cut(s) 4, 83
Tru1I TTAA 3 cut(s) 8, 108, 365
Tru9I TTAA 3 cut(s) 8, 108, 365
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 17, 96, 337
TspRI CASTG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 34, 186
XapI RAATTY 2 cut(s) 4, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.